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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:955259..958039 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03460.1 vs.
Match: EWM27021.1 (protein phosphatase 1a isoform 2 [Nannochloropsis gaditana]) HSP 1 Score: 497.7 bits (1280), Expect = 2.900e-137 Identity = 243/335 (72.54%), Postives = 286/335 (85.37%), Query Frame = 0
Query: 1 MGAHLDKPITEKENYESEAHGLKFGAAAMQGWRVEMEDAHTIVETIDPELDGHSFIAVYDGHGGQYSAIYCGEHMVSFLKKTKGFEDYKKTRDVTHLRSAIHAAFLDLDEVLKRQDEFVSKQDTSGCTAICAIITPTHVVVGNAGDSRGVIFSSDGAKQLSRDHKPYLDDERKRIEEAGGMVSMQRVDGDLALSRSIGDFQYKDRHLPPERQKVTAVPEIEIHTRNAGKDEMLLLACDGVWDVCENEEAGQILKEVLNDGETRMALVAEELLDQCLFRYSKDNISAVVVGFEGM-ARHAKEGEGVEGRRRRR-----QQQEEGGGRGGSGGSGDE 330
MG+HL KPITEKE+YES AHGL FGAAAMQGWRVEMEDAHT++ET+DPEL+GHSFIAVYDGHGGQYSAIY G+HMV F+++T + +YKKT+DV HL++AIH+AFL+LDE LK QDEFV K DTSGCTAICAIITP+HVVV NAGDSR V++++ G QLSRDHKPYL+DERKRIE AGGMVSMQRVDGDLALSRS+GDFQ+KDR+LPPERQKVTAVPE+++H R+ KD LLLACDGVWDVCE+ EAG+I+ ++L DGE RMALVAEELLDQCL RYSKDN+SAVVVGF + H KEGEGVEGRRRRR +++ GG+ G ++
Sbjct: 1 MGSHLAKPITEKESYESNAHGLNFGAAAMQGWRVEMEDAHTVIETMDPELEGHSFIAVYDGHGGQYSAIYAGKHMVDFVRRTVAYTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDRNLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEEEESNDGGKASERGKEEK 335
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03460.1 ID=NO07G03460.1|Name=NO07G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2252bp CGTCGTCGGGCCTTCCCAGACTCCTATGGTCGACCAAAATCACTTCAACC ACACAACCACAACCACAATCTTTCAAATGATTACAACAGAGCTGTCTGCT TGTCGATGGGGCATTGCAGGGTGCGAAGCCTGACTTCTGGGGCATAACAT TGGCCACCGGGCAAGTAACGCGATCGAACTTCTAGTCGAAGTGATTATCT GCCAGGGTTCACAATAGCTACGCCTAGGCATGGGTAGAGCGATGGCGACA CACTCAGCTACGAGTAGGAGCATCAGCTCTGCCATCAGACTACGGCGCTG GATCTGCCGATCGCCTTTTGCGAAAGCACACTCCACATGACGCGGAAAAC ACGATGGATGCAAGCACCTTTTTCCCCTCTTCCCACACCCGAGGAACCAG CTCTCATGAGTGCTGTGCACATCTAACAATGCTACGAAATATGGAATGAC GTCTCTTCCTTCTCTTCACCCCTTCATTCCGCACAGAGAGAGAGAGGGAG AGAGGCGTCTCTTCCATTAAGTCAAGCATGGGGGCGCACCTGGACAAGCC CATCACCGAAAAAGAGAATTACGAGAGCGAGGCACATGGGTTAAAATTTG GTGCAGCGGCCATGCAGGGATGGAGAGTAGAGATGGAGGACGCACACACC ATCGTCGAGACAATTGACCCCGAGCTGGACGGACATTCCTTTATAGCAGT CTACGATGGCCATGGGGGTCAATACTCGGCAATTTACTGCGGGGAGCACA TGGTCTCGTTTTTAAAGAAGACCAAGGGTTTTGAGGACTACAAGAAGACG AGAGACGTAACGCACCTGCGGTCCGCCATTCACGCCGCTTTCCTCGACCT GGACGAGGTTCTGAAACGACAAGACGAATTTGTGTCCAAGCAGGACACCA GCGGCTGCACCGCCATATGCGCCATAATCACACCCACGCATGTAGTGGTC GGCAATGCCGGGGACTCCCGGGGAGTGATCTTCTCATCCGATGGAGCCAA GCAGCTGTCAAGGGACCATAAGCCCTACCTGGACGATGAACGGAAGAGGA TCGAGGAGGCGGGAGGGATGGTAAGCATGCAGAGGGTCGATGGTGATTTG GCCTTGTCCCGGTCCATCGGGGATTTCCAATACAAAGACAGGCATCTCCC GCCTGAGCGTCAGAAAGTCACCGCCGTACCCGAAATTGAGATTCACACGC GGAACGCAGGCAAAGACGAAATGCTCCTCTTGGCCTGTGATGGTGTGTGG GACGTATGCGAGAATGAGGAAGCAGGGCAGATTTTGAAGGAGGTATTGAA CGACGGCGAAACGCGCATGGCCTTGGTAGCAGAAGAGCTGCTTGACCAGT GTTTATTCAGGTATAGCAAGGACAATATTTCGGCGGTTGTGGTGGGGTTT GAGGGAATGGCACGGCATGCGAAGGAGGGGGAGGGTGTGGAGGGGCGGCG AAGGAGGAGGCAGCAGCAAGAGGAGGGGGGAGGTAGGGGAGGAAGTGGGG GCTCCGGAGATGAGGCCGAGAGTTCGTAAGGGGGGGAAAGTGTGGGAGGA GAGGAGGGAGGAGGGGAGGGAGGGCAGGATTTGAGACATGATGCAGTACT AAAATATTGCATTGCGAAATGTCGTCAACGTTTGAGAACAACGGTAGCAG CACCACCAACAGCAACACCAACACCAACACCACCACCAGCAGCAGCAGCA GCAATAAGCAAGAGGGAAGGTCGACCAGCCAGCTACGACGAAGAAGGAAG GAGGGAATCAGAGGGGGTAAGGGACGATACTCTCAAAAGCAGCGGCGAAA AGGACCAACCCGCGAATGTTAAAAAGATAAAACTTCCTAGTAGAGAAAAA GAGTCAGTCAGCGAACGTGTATGAGAGGACGAGAAAGGAAGATAGTGTGT GAGTGTGTGATTATGAGCGAGATTGCATGATGGCCGGAAAAGGCGCATTT TAAAAAAGAATGACAACAAAAGAAATAGAAGACCAACGCTCCATAAAGAA AAGGATTAAAGGGTCGTCTTGAACCAAATAAATAGAAGACAACGCTCTTA AAAAAAAGGAACATAGGGTTTAAGGGTTGCCTCAAACCAAATCAATCAAC GCTCTAGGAAGAAAAGGGTTAGGGTCGCCTAATACCATCACACAGAAGAC GCAGAAGAAAACCAACTCTTGAAAAAGAGAAGAAGAGAACATTTGCAATC ACATCCAAGCATCTGTCTGTTTGACGGAGCTTGCCAGTGAGCAACACGAC CA back to topprotein sequence of NO07G03460.1 >NO07G03460.1-protein ID=NO07G03460.1-protein|Name=NO07G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp MGAHLDKPITEKENYESEAHGLKFGAAAMQGWRVEMEDAHTIVETIDPEL DGHSFIAVYDGHGGQYSAIYCGEHMVSFLKKTKGFEDYKKTRDVTHLRSA IHAAFLDLDEVLKRQDEFVSKQDTSGCTAICAIITPTHVVVGNAGDSRGV IFSSDGAKQLSRDHKPYLDDERKRIEEAGGMVSMQRVDGDLALSRSIGDF QYKDRHLPPERQKVTAVPEIEIHTRNAGKDEMLLLACDGVWDVCENEEAG QILKEVLNDGETRMALVAEELLDQCLFRYSKDNISAVVVGFEGMARHAKE GEGVEGRRRRRQQQEEGGGRGGSGGSGDEAESS* back to topmRNA from alignment at chr7:955259..958039+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03460.1 ID=NO07G03460.1|Name=NO07G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2781bp|location=Sequence derived from alignment at chr7:955259..958039+ (Nannochloropsis oceanica) CGTCGTCGGGCCTTCCCAGACTCCTATGGTCGACCAAAATCACTTCAACC
ACACAACCACAACCACAATCTTTCAAATGATTACAACAGAGCTGTCTGCT
TGTCGATGGGGCATTGCAGGGTGCGAAGCCTGACTTCTGGGGCATAACAT
TGGCCACCGGGCAAGTAACGCGATCGAACTTCTAGTCGAAGTGATTATCT
GCCAGGGTTCACAATAGCTACGCCTAGGCATGGGTAGAGCGATGGCGACA
CACTCAGCTACGAGTAGGAGCATCAGCTCTGCCATCAGACTACGGCGCTG
GATCTGCCGATCGCCTTTTGCGAAAGCACACTCCACATGACGCGGAAAAC
ACGATGGATGCAAGCACCTTTTTCCCCTCTTCCCACACCCGAGGAACCAG
CTCTCATGAGTGCTGTGCACATCTAACAATGCTACGAAATATGGAATGAC
GTCTCTTCCTTCTCTTCACCCCTTCATTCCGCACAGAGAGAGAGAGGGAG
AGAGGCGTCTCTTCCATTAAGTCAAGCATGGGGGCGCACCTGGACAAGCC
CATCACCGAAAAAGAGAATTACGAGAGCGAGGCACATGGGTTAAAATTTG
GTGCAGCGGCCATGCAGGTAGGCCTGTCTGATACATGCGATCCTGACTTA
AAAGACTGATTTGTGAGGTCCACCTCACCACAGCCAAACTTACCCCACAC
ACAATTCGAAACTCATGAACGAACAGGGATGGAGAGTAGAGATGGAGGAC
GCACACACCATCGTCGAGACAATTGGTAAGAAGACTTGAGAGGCGAGGGA
GGAGGGAAGTAACTCTCAGATGATAGAAAAATCTTCTACATGCCCACCAC
CATCCTAACTCTAACCTTAAGACACGAAGGAACCACAACCCTAATCCACA
CATTCTTCTTCTTTCTTCTCTCCCTTCTTCCCTCCTTGCATCAGACCCCG
AGCTGGACGGACATTCCTTTATAGCAGTCTACGATGGCCATGGGGGTCAA
TACTCGGCAATTTACTGCGGGGAGCACATGGTCTCGTTTTTAAAGAAGAC
CAAGGGTTTTGAGGACTACAAGAAGACGAGAGACGTAACGCACCTGCGGG
TGAGCCTCCCCTTCCTCCCTCCCTGCACTCCTTTCCATTCCTCCCTCCCT
CCCTCTTTTTTAGATTAGGTCTATCGTTTCCACCCACCCCTCCCAATCCC
CAACCACCAGTCCGCCATTCACGCCGCTTTCCTCGACCTGGACGAGGTTC
TGAAACGACAAGACGAATTTGTGTCCAAGCAGGACACCAGCGGCTGCACC
GCCATATGCGCCATAATCACACCCACGCATGTAGTGGTCGGCAATGCCGG
GGACTCCCGGGGAGTGATCTTCTCATCCGATGGAGCCAAGCAGCTGTCAA
GGGACCATAAGCCCTACCTGGACGATGAACGGAAGAGGATCGAGGAGGCG
GGAGGGATGGTAAGCATGCAGAGGGTCGATGGTGATTTGGCCTTGTCCCG
GTCCATCGGGGATTTCCAATACAAAGACAGGTAAGTCTCCCATCCCTCCT
TCCCCTCCCTCCTTCGCTCCCTCCTCCACAGTGTCCCCCAAAGGTCTCTT
CCTTATTTTCCCCTCTTCCCTCCCCCCCTCTCTCGCTCCCTCCCTCCTTC
CTCTCTTCCTCCACGCCCAGGCATCTCCCGCCTGAGCGTCAGAAAGTCAC
CGCCGTACCCGAAATTGAGATTCACACGCGGAACGCAGGCAAAGACGAAA
TGCTCCTCTTGGCCTGTGATGGTGTGTGGGACGTATGCGAGAATGAGGAA
GCAGGGCAGATTTTGAAGGAGGTATTGAACGACGGCGAAACGCGCATGGC
CTTGGTAGCAGAAGAGCTGCTTGACCAGTGTTTATTCAGGTATAGCAAGG
ACAATATTTCGGCGGTTGTGGTGGGGTTTGAGGGAATGGCACGGCATGCG
AAGGAGGGGGAGGGTGTGGAGGGGCGGCGAAGGAGGAGGCAGCAGCAAGA
GGAGGGGGGAGGTAGGGGAGGAAGTGGGGGCTCCGGAGATGAGGCCGAGA
GTTCGTAAGGGGGGGAAAGTGTGGGAGGAGAGGAGGGAGGAGGGGAGGGA
GGGCAGGATTTGAGACATGATGCAGTACTAAAATATTGCATTGCGAAATG
TCGTCAACGTTTGAGAACAACGGTAGCAGCACCACCAACAGCAACACCAA
CACCAACACCACCACCAGCAGCAGCAGCAGCAATAAGCAAGAGGGAAGGT
CGACCAGCCAGCTACGACGAAGAAGGAAGGAGGGAATCAGAGGGGGTAAG
GGACGATACTCTCAAAAGCAGCGGCGAAAAGGACCAACCCGCGAATGTTA
AAAAGATAAAACTTCCTAGTAGAGAAAAAGAGTCAGTCAGCGAACGTGTA
TGAGAGGACGAGAAAGGAAGATAGTGTGTGAGTGTGTGATTATGAGCGAG
ATTGCATGATGGCCGGAAAAGGCGCATTTTAAAAAAGAATGACAACAAAA
GAAATAGAAGACCAACGCTCCATAAAGAAAAGGATTAAAGGGTCGTCTTG
AACCAAATAAATAGAAGACAACGCTCTTAAAAAAAAGGAACATAGGGTTT
AAGGGTTGCCTCAAACCAAATCAATCAACGCTCTAGGAAGAAAAGGGTTA
GGGTCGCCTAATACCATCACACAGAAGACGCAGAAGAAAACCAACTCTTG
AAAAAGAGAAGAAGAGAACATTTGCAATCACATCCAAGCATCTGTCTGTT
TGACGGAGCTTGCCAGTGAGCAACACGACCA back to topCoding sequence (CDS) from alignment at chr7:955259..958039+ >NO07G03460.1 ID=NO07G03460.1|Name=NO07G03460.1|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at chr7:955259..958039+ (Nannochloropsis oceanica) ATGGGGGCGCACCTGGACAAGCCCATCACCGAAAAAGAGAATTACGAGAG CGAGGCACATGGGTTAAAATTTGGTGCAGCGGCCATGCAGGGATGGAGAG TAGAGATGGAGGACGCACACACCATCGTCGAGACAATTGACCCCGAGCTG GACGGACATTCCTTTATAGCAGTCTACGATGGCCATGGGGGTCAATACTC GGCAATTTACTGCGGGGAGCACATGGTCTCGTTTTTAAAGAAGACCAAGG GTTTTGAGGACTACAAGAAGACGAGAGACGTAACGCACCTGCGGTCCGCC ATTCACGCCGCTTTCCTCGACCTGGACGAGGTTCTGAAACGACAAGACGA ATTTGTGTCCAAGCAGGACACCAGCGGCTGCACCGCCATATGCGCCATAA TCACACCCACGCATGTAGTGGTCGGCAATGCCGGGGACTCCCGGGGAGTG ATCTTCTCATCCGATGGAGCCAAGCAGCTGTCAAGGGACCATAAGCCCTA CCTGGACGATGAACGGAAGAGGATCGAGGAGGCGGGAGGGATGGTAAGCA TGCAGAGGGTCGATGGTGATTTGGCCTTGTCCCGGTCCATCGGGGATTTC CAATACAAAGACAGGCATCTCCCGCCTGAGCGTCAGAAAGTCACCGCCGT ACCCGAAATTGAGATTCACACGCGGAACGCAGGCAAAGACGAAATGCTCC TCTTGGCCTGTGATGGTGTGTGGGACGTATGCGAGAATGAGGAAGCAGGG CAGATTTTGAAGGAGGTATTGAACGACGGCGAAACGCGCATGGCCTTGGT AGCAGAAGAGCTGCTTGACCAGTGTTTATTCAGGTATAGCAAGGACAATA TTTCGGCGGTTGTGGTGGGGTTTGAGGGAATGGCACGGCATGCGAAGGAG GGGGAGGGTGTGGAGGGGCGGCGAAGGAGGAGGCAGCAGCAAGAGGAGGG GGGAGGTAGGGGAGGAAGTGGGGGCTCCGGAGATGAGGCCGAGAGTTCGT AA back to top
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