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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:930323..932306 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03390.1 vs.
Match: EWM27064.1 (hypothetical protein Naga_100056g5 [Nannochloropsis gaditana]) HSP 1 Score: 287.0 bits (733), Expect = 9.600e-74 Identity = 156/280 (55.71%), Postives = 197/280 (70.36%), Query Frame = 0
Query: 66 QFLSPCSPSLASPHTRQAHLTTKCVLLTVGIIASLAWAVGLAAVLLPEWTVEDANVDSTLNAHIGLFETIYHVGEVRESSTLRFCNGLGPIYSTEKCVMWRVAQISALVGLGMGYTGLLFLYSAVGKSWIRPRRMPEVVAWVWTFFLLAGVCALASATAWKFLVLAFMRDHGKLGDGYSVKMGVSMLLMAGVGVIFLTLPFWRIVTQYWLVGSGSIAGFYRGRKSSLPSSSEASAVAETAGNSSSSSSRSNSSCGSSSGGGNKSRVQRPPHRHSFNKEGI 346
Q LS CSPS SP++R +T K V L IIA+LAW +GLAAVLLPEWTVEDANV STL+AHIGLFETIYHVGEVRESST RFCNGLGP+YSTEKCV WR++QI+AL+ LGMGYTG+L L+ +G SWIRP+ + + AWVW FL AGVC + SA AW LVLAF+RDH +L DGYSV MG+SM +MA +G +F++LP WR+V + ++ S +G GR + + +A E+AG SS +S + G SG G+ S R + +EG+
Sbjct: 6 QHLSTCSPSWLSPNSRLKQITAKRVFLATFIIATLAWGLGLAAVLLPEWTVEDANVQSTLDAHIGLFETIYHVGEVRESSTPRFCNGLGPMYSTEKCVWWRISQITALLSLGMGYTGVLLLFLVIGSSWIRPQHVYSLAAWVWNIFLFAGVCGIGSAAAWNLLVLAFLRDHRELQDGYSVHMGLSMFVMAAMGAVFISLPLWRMVFERCILTWSSSSGTLAGR---MWPFATRNASLESAG---SSKIQSGNFPGHKSGQGSGSGCARTGNALVNEEEGV 279
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03390.1 ID=NO07G03390.1|Name=NO07G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp CCAGGAATGCTTCTTTCTTGCTCTTCCTCCACCTTCTTCAAAGATCATCA AGCCCACAAAATGCTCACTTCCTTGTCATATCACCCCAAGCGCAGACGGC TGAGTCCAGTCCACGTGCCAATCCCCCTCGGTATGGCCCCTTTTCCATCC AAACCACACCAATCAGCGATGGGACTTTGCCCCCTGCAAGCTACGGAACT CCAGTTCCTATCGCCCTGTTCCCCCTCTCTGGCATCGCCCCACACCCGTC AGGCCCATCTCACTACGAAATGTGTCCTCTTGACCGTAGGCATCATTGCC AGCTTGGCCTGGGCCGTGGGGTTGGCCGCCGTCTTGCTTCCAGAGTGGAC TGTCGAGGACGCCAATGTCGACAGCACTCTCAATGCCCACATCGGGCTCT TCGAGACCATCTACCACGTCGGAGAAGTCCGGGAGTCCTCCACCCTTCGA TTCTGCAATGGTTTGGGTCCAATTTATTCGACGGAAAAATGCGTCATGTG GCGCGTGGCACAAATTAGCGCGTTGGTTGGACTAGGCATGGGATACACGG GCCTTCTCTTCTTATACAGTGCGGTGGGGAAGAGTTGGATCCGTCCTCGG AGAATGCCAGAGGTGGTCGCGTGGGTGTGGACATTCTTTCTACTGGCAGG TGTGTGTGCATTAGCAAGCGCGACTGCGTGGAAGTTTTTGGTGTTGGCTT TCATGCGGGACCATGGCAAGTTGGGTGATGGGTACTCGGTAAAAATGGGC GTATCGATGCTGCTTATGGCGGGGGTAGGTGTGATCTTTCTGACTTTGCC ATTCTGGAGAATAGTGACGCAGTATTGGTTGGTGGGTAGTGGTAGTATAG CTGGATTTTATAGGGGGAGGAAGAGTTCGTTGCCGTCGTCGTCAGAGGCA TCAGCTGTAGCAGAGACAGCGGGGAACAGCAGCAGCAGTAGCAGCCGCAG CAACAGCAGCTGCGGCAGTAGCAGCGGCGGTGGCAACAAGTCTCGTGTTC AGAGACCACCTCATCGTCATAGCTTCAACAAGGAGGGGATCTCACGCTGG CGAAAACGGGCGGCGGACATCCTGCAATTGCCCAGGGTGGATAGCATGAA GGAGAAAGAGGGAGGGTTGGAGGAAGGGGAAGAGGGGAGGGACGCAGATG AGGAGGAAGGCGAGGGGAGCATGAGGAATCAGAAGGAAAGAATTGAATTG GCGAAACCTCCCATTGCCATTGGTTGTCAGAGTACAGAGCTTAAGTAGTA GACAAGAAATGGATAGCACGACATTTAGATTGACTAGGAAGCGCCAAATA AAACAAATCACACAACACTAAATATACAAATACTGCCATTGTATATTTGG TTGAACAGACAGCCGTTTCCGATTTGGTTCTCTTTCTTGTCAAACTAACT TATTTTTGAATCAGAAGAACCACTTTTGTATCTGTCGGCCCTCGCCTACT TGCAACCGATGCATTTCGCCCTTGGTCAAAGTCATCACATTTGTCCTCCT GCAACCAACACGTTCCCTCCTCTCCGTCGTAGGTGTTACTTCCTGATCCT ACTTGCTTCCTACATCCTTATCGCCCGCTTTCCCATTCTCTCGGACTTCT CCCCTGGTGCACGTTTTTATTTTTTTCGAAAAAAAAATACATAGAACATA GAACATTAAACATAGAAAATCAAAATCAAAATTTCAAGAGGCGTCAAATA TGCGCGACTCGACCTACACTTGCAGTACGTACTCCGGCTCTTCTTGTGCC ATGGCTCTTTTTGGGGACAAAACAGACAAAATTTAACATAGAAAATCAAA ATAATGGCACGCACATCTCCCGGTGATTCCCTTGGTCTCGCACGGGCTGA AGGACATTCATTGGTGCCACTGATGGGCAGGATTCACCAGTTAGTGTTAT GACACATCTAGAGAGGCAAAAGATACATCAAAATTATTGCTCCATAAATG CGGGCAAGAAATAGGACCGAGCTTCATTTGGTAG back to topprotein sequence of NO07G03390.1 >NO07G03390.1-protein ID=NO07G03390.1-protein|Name=NO07G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp MLLSCSSSTFFKDHQAHKMLTSLSYHPKRRRLSPVHVPIPLGMAPFPSKP HQSAMGLCPLQATELQFLSPCSPSLASPHTRQAHLTTKCVLLTVGIIASL AWAVGLAAVLLPEWTVEDANVDSTLNAHIGLFETIYHVGEVRESSTLRFC NGLGPIYSTEKCVMWRVAQISALVGLGMGYTGLLFLYSAVGKSWIRPRRM PEVVAWVWTFFLLAGVCALASATAWKFLVLAFMRDHGKLGDGYSVKMGVS MLLMAGVGVIFLTLPFWRIVTQYWLVGSGSIAGFYRGRKSSLPSSSEASA VAETAGNSSSSSSRSNSSCGSSSGGGNKSRVQRPPHRHSFNKEGISRWRK RAADILQLPRVDSMKEKEGGLEEGEEGRDADEEEGEGSMRNQKERIELAK PPIAIGCQSTELK* back to topmRNA from alignment at chr7:930323..932306- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03390.1 ID=NO07G03390.1|Name=NO07G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp|location=Sequence derived from alignment at chr7:930323..932306- (Nannochloropsis oceanica) CCAGGAATGCTTCTTTCTTGCTCTTCCTCCACCTTCTTCAAAGATCATCA
AGCCCACAAAATGCTCACTTCCTTGTCATATCACCCCAAGCGCAGACGGC
TGAGTCCAGTCCACGTGCCAATCCCCCTCGGTATGGCCCCTTTTCCATCC
AAACCACACCAATCAGCGATGGGACTTTGCCCCCTGCAAGCTACGGAACT
CCAGTTCCTATCGCCCTGTTCCCCCTCTCTGGCATCGCCCCACACCCGTC
AGGCCCATCTCACTACGAAATGTGTCCTCTTGACCGTAGGCATCATTGCC
AGCTTGGCCTGGGCCGTGGGGTTGGCCGCCGTCTTGCTTCCAGAGTGGAC
TGTCGAGGACGCCAATGTCGACAGCACTCTCAATGCCCACATCGGGCTCT
TCGAGACCATCTACCACGTCGGAGAAGTCCGGGAGTCCTCCACCCTTCGA
TTCTGCAATGGTTTGGGTCCAATTTATTCGACGGAAAAATGCGTCATGTG
GCGCGTGGCACAAATTAGCGCGTTGGTTGGACTAGGCATGGGATACACGG
GCCTTCTCTTCTTATACAGTGCGGTGGGGAAGAGTTGGATCCGTCCTCGG
AGAATGCCAGAGGTGGTCGCGTGGGTGTGGACATTCTTTCTACTGGCAGG
TGTGTGTGCATTAGCAAGCGCGACTGCGTGGAAGTTTTTGGTGTTGGCTT
TCATGCGGGACCATGGCAAGTTGGGTGATGGGTACTCGGTAAAAATGGGC
GTATCGATGCTGCTTATGGCGGGGGTAGGTGTGATCTTTCTGACTTTGCC
ATTCTGGAGAATAGTGACGCAGTATTGGTTGGTGGGTAGTGGTAGTATAG
CTGGATTTTATAGGGGGAGGAAGAGTTCGTTGCCGTCGTCGTCAGAGGCA
TCAGCTGTAGCAGAGACAGCGGGGAACAGCAGCAGCAGTAGCAGCCGCAG
CAACAGCAGCTGCGGCAGTAGCAGCGGCGGTGGCAACAAGTCTCGTGTTC
AGAGACCACCTCATCGTCATAGCTTCAACAAGGAGGGGATCTCACGCTGG
CGAAAACGGGCGGCGGACATCCTGCAATTGCCCAGGGTGGATAGCATGAA
GGAGAAAGAGGGAGGGTTGGAGGAAGGGGAAGAGGGGAGGGACGCAGATG
AGGAGGAAGGCGAGGGGAGCATGAGGAATCAGAAGGAAAGAATTGAATTG
GCGAAACCTCCCATTGCCATTGGTTGTCAGAGTACAGAGCTTAAGTAGTA
GACAAGAAATGGATAGCACGACATTTAGATTGACTAGGAAGCGCCAAATA
AAACAAATCACACAACACTAAATATACAAATACTGCCATTGTATATTTGG
TTGAACAGACAGCCGTTTCCGATTTGGTTCTCTTTCTTGTCAAACTAACT
TATTTTTGAATCAGAAGAACCACTTTTGTATCTGTCGGCCCTCGCCTACT
TGCAACCGATGCATTTCGCCCTTGGTCAAAGTCATCACATTTGTCCTCCT
GCAACCAACACGTTCCCTCCTCTCCGTCGTAGGTGTTACTTCCTGATCCT
ACTTGCTTCCTACATCCTTATCGCCCGCTTTCCCATTCTCTCGGACTTCT
CCCCTGGTGCACGTTTTTATTTTTTTCGAAAAAAAAATACATAGAACATA
GAACATTAAACATAGAAAATCAAAATCAAAATTTCAAGAGGCGTCAAATA
TGCGCGACTCGACCTACACTTGCAGTACGTACTCCGGCTCTTCTTGTGCC
ATGGCTCTTTTTGGGGACAAAACAGACAAAATTTAACATAGAAAATCAAA
ATAATGGCACGCACATCTCCCGGTGATTCCCTTGGTCTCGCACGGGCTGA
AGGACATTCATTGGTGCCACTGATGGGCAGGATTCACCAGTTAGTGTTAT
GACACATCTAGAGAGGCAAAAGATACATCAAAATTATTGCTCCATAAATG
CGGGCAAGAAATAGGACCGAGCTTCATTTGGTAG back to topCoding sequence (CDS) from alignment at chr7:930323..932306- >NO07G03390.1 ID=NO07G03390.1|Name=NO07G03390.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr7:930323..932306- (Nannochloropsis oceanica) ATGCTTCTTTCTTGCTCTTCCTCCACCTTCTTCAAAGATCATCAAGCCCA CAAAATGCTCACTTCCTTGTCATATCACCCCAAGCGCAGACGGCTGAGTC CAGTCCACGTGCCAATCCCCCTCGGTATGGCCCCTTTTCCATCCAAACCA CACCAATCAGCGATGGGACTTTGCCCCCTGCAAGCTACGGAACTCCAGTT CCTATCGCCCTGTTCCCCCTCTCTGGCATCGCCCCACACCCGTCAGGCCC ATCTCACTACGAAATGTGTCCTCTTGACCGTAGGCATCATTGCCAGCTTG GCCTGGGCCGTGGGGTTGGCCGCCGTCTTGCTTCCAGAGTGGACTGTCGA GGACGCCAATGTCGACAGCACTCTCAATGCCCACATCGGGCTCTTCGAGA CCATCTACCACGTCGGAGAAGTCCGGGAGTCCTCCACCCTTCGATTCTGC AATGGTTTGGGTCCAATTTATTCGACGGAAAAATGCGTCATGTGGCGCGT GGCACAAATTAGCGCGTTGGTTGGACTAGGCATGGGATACACGGGCCTTC TCTTCTTATACAGTGCGGTGGGGAAGAGTTGGATCCGTCCTCGGAGAATG CCAGAGGTGGTCGCGTGGGTGTGGACATTCTTTCTACTGGCAGGTGTGTG TGCATTAGCAAGCGCGACTGCGTGGAAGTTTTTGGTGTTGGCTTTCATGC GGGACCATGGCAAGTTGGGTGATGGGTACTCGGTAAAAATGGGCGTATCG ATGCTGCTTATGGCGGGGGTAGGTGTGATCTTTCTGACTTTGCCATTCTG GAGAATAGTGACGCAGTATTGGTTGGTGGGTAGTGGTAGTATAGCTGGAT TTTATAGGGGGAGGAAGAGTTCGTTGCCGTCGTCGTCAGAGGCATCAGCT GTAGCAGAGACAGCGGGGAACAGCAGCAGCAGTAGCAGCCGCAGCAACAG CAGCTGCGGCAGTAGCAGCGGCGGTGGCAACAAGTCTCGTGTTCAGAGAC CACCTCATCGTCATAGCTTCAACAAGGAGGGGATCTCACGCTGGCGAAAA CGGGCGGCGGACATCCTGCAATTGCCCAGGGTGGATAGCATGAAGGAGAA AGAGGGAGGGTTGGAGGAAGGGGAAGAGGGGAGGGACGCAGATGAGGAGG AAGGCGAGGGGAGCATGAGGAATCAGAAGGAAAGAATTGAATTGGCGAAA CCTCCCATTGCCATTGGTTGTCAGAGTACAGAGCTTAAGTAG back to top
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