NO07G03380.1, NO07G03380.1 (mRNA) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO07G03380.1 vs.
Match: EWM27040.1 (uracil-dna glycosylase [Nannochloropsis gaditana]) HSP 1 Score: 429.1 bits (1102), Expect = 1.300e-116 Identity = 231/338 (68.34%), Postives = 253/338 (74.85%), Query Frame = 0 Query: 1 MTQPKLSAFFTSSSSTKSTPDPA--ALSGAGAPKRALDS--SGGGVEGDCGTPAVQAPAAKKVAVEKSTMSTASSFSSFSRSPFSSASSSSASASTPSFLSSSLVPHPVLQSLPIMDDGWRQLVTNEANKPYFKRLLAFLTQEATSKQVVYPPYPLVFTALTLCRWTDVRVVIIGQDPYHGPNQAHGLAFSVVGPTPPPPSLNNMFKEAVMDVVGFIKPSHGNLEAWSRQGVLLLNTVLTVRRGQAHSHKGKGWESFTDAVIKELDAKKTGLVFLLWGKPAQEKCKNINRKKHRVIQCAHPSPLSATKTSTPFIGSKSFSRANLLLKELGKAPIDWRL 335 MTQ KLSAFF SSS K+ P S + KR LD G AV P KK A K TA+S + F++ SS + S L +L HPVLQSL MDDGWR V ++A KPYF RLLAFL+QE +S+QVVYPPYPLVF+ALTLCRW DVRVVIIGQDPYHGPNQAHGLAFSV+ PT PPPSLNNMFKEA+ DV GF KPSHGNLEAWSRQGVLLLNTVLTVRRGQA+SHKGKGWE+FTDAVIKELD KK GLVF+LWGKPAQEKCK+INR KHRVI+CAHPSPLSATKT+ PFIGSKSFSR N L ELGK PIDWRL Sbjct: 1 MTQSKLSAFFRSSSHKKTAPKTGEDCSSESRLEKRVLDDIDDNSGTLEKHDVVAVVQPPEKKTACGKKIEVTAASLA------FAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 332 The following BLAST results are available for this feature:
BLAST of NO07G03380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1) Total hits: 1
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03380.1 ID=NO07G03380.1|Name=NO07G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1005bpback to top protein sequence of NO07G03380.1 >NO07G03380.1-protein ID=NO07G03380.1-protein|Name=NO07G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bpback to top mRNA from alignment at chr7:928397..929582+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>NO07G03380.1 ID=NO07G03380.1|Name=NO07G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp|location=Sequence derived from alignment at chr7:928397..929582+ (Nannochloropsis oceanica)back to top Coding sequence (CDS) from alignment at chr7:928397..929582+ >NO07G03380.1 ID=NO07G03380.1|Name=NO07G03380.1|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr7:928397..929582+ (Nannochloropsis oceanica)back to top Synonyms
Publications
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