NO07G03200.1, NO07G03200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03200.1
Unique NameNO07G03200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1047
Alignment locationchr7:882922..883968 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:882922..883968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03200.1 vs.
Match: EWM27063.1 (pfkb-like carbohydrate kinase family protein [Nannochloropsis gaditana])

HSP 1 Score: 488.8 bits (1257), Expect = 1.400e-134
Identity = 240/338 (71.01%), Postives = 278/338 (82.25%), Query Frame = 0 
Query:   13 PKVLGMGVTGIDLLAYVDAYPAPDAKIRTSDFKVQGGGNAGNTLTALSRLGVHAEIFTKVGDDAYGKMIIDELAADGLDTRRVIRKAGISSPFTYVIVDTASQTRTCLHTPSEDMTEEEVLPSLLDGVDFLHLDGRNTLAAIKLARLSRERGIPVMLDAEKDRPHLKELVPLCDFLVTNTAFPKTFTGARSTEEGMAALLSLGKARLIFTTLGADGSMVMGRSEDMLLGGKRDGE----DRIWP-----MPLGMQESTYTCPSEATDLVVIKCKAWPLEPKEVVDTTGAGDAFIAGIIYGLTHSLPIPRMLVLGGYVAAQKLKKPGARAGLPRREFVP 342
            PKVLGMG+TG+DLLAYV+ YPA DAKIRTSDFK+QGGGNAGNTLT L RLGV  EI TKVG+DAYG MI++E A DGLDTR VIRKAGISSPFTYVIVD A QTRTCLHTPSED+TE+E+ P++LDGVDFLHLDGRNTLAAI+LA+L+  RGIPVMLDAEKDRPHL+ELVPLCDFL TN  FPK FTGA STEEGMA LL +G+ARL+FTTLGA GSMVMG   +M +GGKR G+    +R  P     +PL  +  +Y CPS    L +++C AWP+ P+++VDTTGAGDAFIAG+IYGL HSL +P ML L G+VAAQKL+ PGAR GLPRRE +P
Sbjct:   53 PKVLGMGITGVDLLAYVETYPAADAKIRTSDFKIQGGGNAGNTLTGLCRLGVRTEILTKVGNDAYGSMILEEFAIDGLDTRHVIRKAGISSPFTYVIVDMAGQTRTCLHTPSEDLTEDEINPAVLDGVDFLHLDGRNTLAAIRLAQLANARGIPVMLDAEKDRPHLRELVPLCDFLATNAVFPKAFTGAASTEEGMARLLDMGRARLVFTTLGAKGSMVMGLPSEM-IGGKRGGDGNEKERREPRAGEALPLATETRSYACPSTGLALTLVRCDAWPVLPEDIVDTTGAGDAFIAGLIYGLVHSLSVPHMLNLAGFVAAQKLQAPGARQGLPRRETLP 389
The following BLAST results are available for this feature:
BLAST of NO07G03200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27063.11.400e-13471.01pfkb-like carbohydrate kinase family protein [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03200NO07G03200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03200.1NO07G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03200.1.cds1NO07G03200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03200.1 ID=NO07G03200.1|Name=NO07G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp
ATGGCCTCGACTCATTCCGGCAGCAGTGACACTCATCCCAAAGTCTTGGG
AATGGGGGTCACGGGCATTGACTTGCTAGCCTACGTCGACGCCTACCCCG
CCCCTGATGCCAAAATCCGGACGAGCGATTTCAAGGTCCAAGGTGGCGGC
AATGCAGGCAATACGCTGACGGCTCTCAGTCGCTTGGGCGTCCATGCCGA
GATTTTTACAAAAGTGGGCGATGATGCATATGGCAAGATGATTATTGATG
AGCTTGCTGCGGACGGATTGGATACCCGTCGGGTCATCCGCAAGGCCGGC
ATCTCCTCTCCCTTCACCTATGTCATCGTCGACACCGCCAGTCAAACCCG
CACATGCTTACACACGCCCTCCGAAGACATGACTGAAGAGGAGGTTCTTC
CCTCTCTATTAGACGGGGTGGACTTTCTCCACCTCGACGGACGCAACACC
CTTGCAGCCATCAAGCTTGCCCGGCTCTCTCGCGAACGCGGTATTCCAGT
CATGCTTGACGCCGAAAAAGACCGACCACACTTAAAGGAACTCGTCCCCC
TTTGCGATTTTCTAGTGACCAACACAGCGTTTCCCAAGACGTTTACGGGC
GCGAGGAGCACAGAGGAAGGAATGGCGGCGCTTTTGAGTTTGGGGAAAGC
GAGATTAATTTTCACAACGCTTGGCGCGGATGGGAGCATGGTAATGGGCC
GTTCGGAAGATATGCTGCTTGGGGGGAAGAGGGATGGGGAAGATAGGATA
TGGCCGATGCCTTTAGGGATGCAGGAATCGACATACACCTGTCCGTCGGA
GGCAACGGACTTAGTAGTAATTAAGTGCAAGGCATGGCCGTTGGAGCCGA
AAGAGGTTGTGGATACCACCGGGGCAGGGGATGCGTTTATTGCTGGAATA
ATATATGGGTTGACTCACTCACTGCCGATTCCAAGAATGCTGGTCTTGGG
GGGTTATGTGGCAGCGCAGAAACTAAAGAAGCCAGGGGCGAGGGCAGGGC
TGCCAAGAAGGGAATTTGTACCAAGGGAAGTGGGCCTGGTCGGGTAA
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protein sequence of NO07G03200.1

>NO07G03200.1-protein ID=NO07G03200.1-protein|Name=NO07G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MASTHSGSSDTHPKVLGMGVTGIDLLAYVDAYPAPDAKIRTSDFKVQGGG
NAGNTLTALSRLGVHAEIFTKVGDDAYGKMIIDELAADGLDTRRVIRKAG
ISSPFTYVIVDTASQTRTCLHTPSEDMTEEEVLPSLLDGVDFLHLDGRNT
LAAIKLARLSRERGIPVMLDAEKDRPHLKELVPLCDFLVTNTAFPKTFTG
ARSTEEGMAALLSLGKARLIFTTLGADGSMVMGRSEDMLLGGKRDGEDRI
WPMPLGMQESTYTCPSEATDLVVIKCKAWPLEPKEVVDTTGAGDAFIAGI
IYGLTHSLPIPRMLVLGGYVAAQKLKKPGARAGLPRREFVPREVGLVG*
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mRNA from alignment at chr7:882922..883968+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03200.1 ID=NO07G03200.1|Name=NO07G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp|location=Sequence derived from alignment at chr7:882922..883968+ (Nannochloropsis oceanica)
ATGGCCTCGACTCATTCCGGCAGCAGTGACACTCATCCCAAAGTCTTGGG
AATGGGGGTCACGGGCATTGACTTGCTAGCCTACGTCGACGCCTACCCCG
CCCCTGATGCCAAAATCCGGACGAGCGATTTCAAGGTCCAAGGTGGCGGC
AATGCAGGCAATACGCTGACGGCTCTCAGTCGCTTGGGCGTCCATGCCGA
GATTTTTACAAAAGTGGGCGATGATGCATATGGCAAGATGATTATTGATG
AGCTTGCTGCGGACGGATTGGATACCCGTCGGGTCATCCGCAAGGCCGGC
ATCTCCTCTCCCTTCACCTATGTCATCGTCGACACCGCCAGTCAAACCCG
CACATGCTTACACACGCCCTCCGAAGACATGACTGAAGAGGAGGTTCTTC
CCTCTCTATTAGACGGGGTGGACTTTCTCCACCTCGACGGACGCAACACC
CTTGCAGCCATCAAGCTTGCCCGGCTCTCTCGCGAACGCGGTATTCCAGT
CATGCTTGACGCCGAAAAAGACCGACCACACTTAAAGGAACTCGTCCCCC
TTTGCGATTTTCTAGTGACCAACACAGCGTTTCCCAAGACGTTTACGGGC
GCGAGGAGCACAGAGGAAGGAATGGCGGCGCTTTTGAGTTTGGGGAAAGC
GAGATTAATTTTCACAACGCTTGGCGCGGATGGGAGCATGGTAATGGGCC
GTTCGGAAGATATGCTGCTTGGGGGGAAGAGGGATGGGGAAGATAGGATA
TGGCCGATGCCTTTAGGGATGCAGGAATCGACATACACCTGTCCGTCGGA
GGCAACGGACTTAGTAGTAATTAAGTGCAAGGCATGGCCGTTGGAGCCGA
AAGAGGTTGTGGATACCACCGGGGCAGGGGATGCGTTTATTGCTGGAATA
ATATATGGGTTGACTCACTCACTGCCGATTCCAAGAATGCTGGTCTTGGG
GGGTTATGTGGCAGCGCAGAAACTAAAGAAGCCAGGGGCGAGGGCAGGGC
TGCCAAGAAGGGAATTTGTACCAAGGGAAGTGGGCCTGGTCGGGTAA
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Coding sequence (CDS) from alignment at chr7:882922..883968+

>NO07G03200.1 ID=NO07G03200.1|Name=NO07G03200.1|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr7:882922..883968+ (Nannochloropsis oceanica)
ATGGCCTCGACTCATTCCGGCAGCAGTGACACTCATCCCAAAGTCTTGGG
AATGGGGGTCACGGGCATTGACTTGCTAGCCTACGTCGACGCCTACCCCG
CCCCTGATGCCAAAATCCGGACGAGCGATTTCAAGGTCCAAGGTGGCGGC
AATGCAGGCAATACGCTGACGGCTCTCAGTCGCTTGGGCGTCCATGCCGA
GATTTTTACAAAAGTGGGCGATGATGCATATGGCAAGATGATTATTGATG
AGCTTGCTGCGGACGGATTGGATACCCGTCGGGTCATCCGCAAGGCCGGC
ATCTCCTCTCCCTTCACCTATGTCATCGTCGACACCGCCAGTCAAACCCG
CACATGCTTACACACGCCCTCCGAAGACATGACTGAAGAGGAGGTTCTTC
CCTCTCTATTAGACGGGGTGGACTTTCTCCACCTCGACGGACGCAACACC
CTTGCAGCCATCAAGCTTGCCCGGCTCTCTCGCGAACGCGGTATTCCAGT
CATGCTTGACGCCGAAAAAGACCGACCACACTTAAAGGAACTCGTCCCCC
TTTGCGATTTTCTAGTGACCAACACAGCGTTTCCCAAGACGTTTACGGGC
GCGAGGAGCACAGAGGAAGGAATGGCGGCGCTTTTGAGTTTGGGGAAAGC
GAGATTAATTTTCACAACGCTTGGCGCGGATGGGAGCATGGTAATGGGCC
GTTCGGAAGATATGCTGCTTGGGGGGAAGAGGGATGGGGAAGATAGGATA
TGGCCGATGCCTTTAGGGATGCAGGAATCGACATACACCTGTCCGTCGGA
GGCAACGGACTTAGTAGTAATTAAGTGCAAGGCATGGCCGTTGGAGCCGA
AAGAGGTTGTGGATACCACCGGGGCAGGGGATGCGTTTATTGCTGGAATA
ATATATGGGTTGACTCACTCACTGCCGATTCCAAGAATGCTGGTCTTGGG
GGGTTATGTGGCAGCGCAGAAACTAAAGAAGCCAGGGGCGAGGGCAGGGC
TGCCAAGAAGGGAATTTGTACCAAGGGAAGTGGGCCTGGTCGGGTAA
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Synonyms
Publications