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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:859492..861643 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03080.1 vs.
Match: XP_005852499.1 (light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526]; EKU23332.1 light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 396.4 bits (1017), Expect = 7.200e-107 Identity = 193/231 (83.55%), Postives = 208/231 (90.04%), Query Frame = 0
Query: 34 RALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIVKSIFG 265
R L C+ALPALA+AF++RAPT V + KGRTVVMESIS+FLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGG++ R KKK RESELKHGRVAMMAV GIF QE+WHPLLAGDDFETAL QYYGVTEFIPDFG GA+FVLSLFEFKSIA GWDP+EETLK PKIAGMRDDYVAGDLQYDPLGFCPDDDE F+ MRTKELNNGRMAMIA IGII QE+ TGVP+VKS+FG
Sbjct: 492 RLLFCVALPALATAFLARAPTTVPHTHSVRKGRTVVMESISEFLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGGKTIRQKKKLRESELKHGRVAMMAVLGIFVQELWHPLLAGDDFETALSQYYGVTEFIPDFGAGALFVLSLFEFKSIAMGWDPVEETLKEPKIAGMRDDYVAGDLQYDPLGFCPDDDEAFVRMRTKELNNGRMAMIAAIGIIGQELATGVPVVKSLFG 722
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03080.1 ID=NO07G03080.1|Name=NO07G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp GGGAGGGAGGGATGAGGGGAGGGGGGACATGTAGAGTTAGTGAGAAGCGG GTAGTAAGTGAGGAGCAGGTAGATGCATGTGTAGAGTAGAAGAAGGCAAG CGAAACCGACTGAATGCATAGCATCAAGTAACGTTTAAATGCACACAATC AGTGGATCGACTAGCAGCTGTAATAGCACGAGCACCAGGGGCCGAGATCG GAGGGGGGAGAGGTGGAGGAGGGAGAATTATAAGGAAGAAAACCCGGTAG ACCTTGGTGTAATCACCAGGATACGGGCGCCTTAATAAAGAAGTAAAATA AAAAGTGCTGCCCAAGGCTCACTGGAATGGGCCGGGCAAAGAACATGAAC ATCGTCGGTCAGCGAGAAGAAGCAGAAGCAGAGAAGCAGGGTGAGGTGGT CATAGTTCTTTTCTGCCGCTATCCTACAATCCTGAACTGGCTTTACGCCG TCCTTTGTTTTCCGCCCCGTCCTTTTGACATTAGTCCTTTCTTTATTGCG CAGAGCGGCGGCACAAAGACGACATTTTTGCTGTCATTGTGCTGGTAGAT GGCCTGAATTCGAGCGTGCGTGGCCGTCGACGTAGTCGAAGCCCGGGCCG ATCTATGTGCACGACGCACATACAGCAATGCACGCGTCGTTGTTCTGGAA TGCACGACAAAATCTCACTAGCTCCCACCTCAAAAATATCCACATCTCTT ATAGTAATTCTACCATGATCGCTACGCGTGCCTTGCTCTGCCTGGCCCTA CCGGCCTTGGCCTCCGCCTTCGTTAGCCGTGCCCCCACTGCTGTGACCCG CGCCTCTGCTCCTGTGAAGGGCCGCACAGTGGTAATGGAGTCCATCTCGG ACTTCCTCAAGTTTGATGCGAAGCTCGGCGAGCTGGAAGTGACCAAGGCT GGCGTCTCCGCTCCCTTCGGTTTCTTCGATCCCTTAAACTTTTACGGCGG CCAAAGCACCCGCACCAAGAAGAAGTTCCGTGAGTCAGAGCTCAAGCACG GCCGCGTCGCTATGATGGCCGTGGCTGGCATTTTTTTTCAAGAAATCTGG CACCCGTTGTTGGCGGGGGATGACTTCGAGACAGCGCTGGACCAATACTA TGGAGTGACGGAGTTTATACCTGATTTTGGCCTGGGGGCGATGTTTGTGT TGTCGTTGTTCGAATTCAAGAGCATTGCCAAGGGCTGGGACCCGATTGAA GAGACGCTTAAGAACCCAAAAATTGCTGGCATGCGCGACGACTACGTGGC AGGTGATTTACAGTACGATCCCCTTGGCTTCTGCCCTGACGATGACGAGG ACTTTATCACCATGCGCACGAAGGAGCTGAATAATGGCCGCATGGCGATG ATTGCCGTCATTGGCATTATTGCCCAGGAGATTGTGACGGGCGTCCCTAT TGTTAAGTCCATCTTTGGATAAATATCTGATGATGTGTGTGTGTGTGCGT GAGAAAGAGAAAGCAAGAAGGGACTCAAAAAAAGAAAATAAAAGAGATAT GGAGAAGCAGTGTATGTGTGTGTGTTCGTATGTTTGTTTGAAAATATGCT GTGATAAAACTGGTTTGTGTGGGTCCGTGCGTTGGCAGTGGCGTCATATG AACTTGTGTTGAGTGTGTTTTATCTTAACAAAGAAGCAGACACAAGAGAT TAAGAAGAGTAAATGAAATCAGGCCAAATGCTAT back to topprotein sequence of NO07G03080.1 >NO07G03080.1-protein ID=NO07G03080.1-protein|Name=NO07G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp MHASLFWNARQNLTSSHLKNIHISYSNSTMIATRALLCLALPALASAFVS RAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFGFF DPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDF ETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIA GMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQ EIVTGVPIVKSIFG* back to topmRNA from alignment at chr7:859492..861643- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03080.1 ID=NO07G03080.1|Name=NO07G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2152bp|location=Sequence derived from alignment at chr7:859492..861643- (Nannochloropsis oceanica) GGGAGGGAGGGATGAGGGGAGGGGGGACATGTAGAGTTAGTGAGAAGCGG
GTAGTAAGTGAGGAGCAGGTAGATGCATGTGTAGAGTAGAAGAAGGCAAG
CGAAACCGACTGAATGCATAGCATCAAGTAACGTTTAAATGCACACAATC
AGTGGATCGACTAGCAGCTGTAATAGCACGAGCACCAGGGGCCGAGATCG
GAGGGGGGAGAGGTGGAGGAGGGAGAATTATAAGGAAGAAAACCCGGTAG
ACCTTGGTGTAATCACCAGGATACGGGCGCCTTAATAAAGAAGTAAAATA
AAAAGTGCTGCCCAAGGCTCACTGGAATGGGCCGGGCAAAGAACATGAAC
ATCGTCGGTCAGCGAGAAGAAGCAGAAGCAGAGAAGCAGGGTGAGGTGGT
CATAGTTCTTTTCTGCCGCTATCCTACAATCCTGAACTGGCTTTACGCCG
TCCTTTGTTTTCCGCCCCGTCCTTTTGACATTAGTCCTTTCTTTATTGCG
CAGAGCGGCGGCACAAAGACGACATTTTTGCTGTCATTGTGCTGGTAGAT
GGCCTGAATTCGAGCGTGCGTGGCCGTCGACGTAGTCGAAGCCCGGGCCG
ATCTATGTGCACGACGCACATACAGCAATGCACGCGTCGTTGTTCTGGAA
TGCACGACAAAATCTCACTAGCTCCCACCTCAAAAATATCCACATCTCTT
ATAGTAATTCTACCATGATCGCTACGCGTGCCTTGCTCTGCCTGGCCCTA
CCGGCCTTGGCCTCCGCCTTCGTTAGCCGTGCCCCCACTGCTGTGACCCG
CGCCTCTGCTCCTGTGAAGGGCCGCACAGTGGTAATGGAGTCCATCTCGG
ACTTCCTCAAGTTTGATGCGAAGCTCGGCGAGCTGGAAGTGACCAAGGCT
GGCGTGTAAGTAGACGTGGACAGGAGGGAGGGAGGAAAGTAACGGTGGAA
GGACGATGATGAGGAGCGGGCTGGCTTGGGTGGGTTTGCCTCTTTGTACA
TGCGGCCTTCGTGGATGATGCCCACGTTTTCAGTTTAATGGCCATCGTAT
TGTCCGTCCAGGTGTGGAGCATCAGCCACGCCATCGTCTTTCTTTTTCAC
CCCTTTACACTTTTTCTTATTCCGAACACCCACAGCTCCGCTCCCTTCGG
TTTCTTCGATCCCTTAAACTTTTACGGCGGCCAAAGCACCCGCACCAAGA
AGAAGTTCCGTGAGTCAGAGCTCAAGCACGGCCGCGTCGCTATGATGGCC
GTGGCTGGCATTTTTTTTCAAGAAATCTGGCACCCGTTGTTGGCGGGGGA
TGACTTCGAGACAGCGCTGGACCAATACTATGGAGTGACGGAGTTTATAC
CTGATTTTGGCCTGGGGGCGATGTTTGTGTTGTCGTTGTTCGAATTCAAG
AGCATTGCCAAGGGCTGGGACCCGATTGAAGAGACGCTTAAGAACCCAAG
TACGTGTCTTGTGTGTGGTTTCTGATGCTGCCTCTTTTTGTCAACTATCT
TGAGGCTGTCTCTGTGAGTCCAATTGTCCCTGTCGAACCCCCCGCTCGTT
TATACACTTCAGCAGAATCAGCCATTAACCTGCCTCTGACCCTCTCTGTT
ACCGCATCTACTTGCTGGTCGTAATGTATATCCTAACCAAAACCAACCAT
GTCCCCAACCTTCCTCTTCTCCCCCTCCACGACATAGAAATTGCTGGCAT
GCGCGACGACTACGTGGCAGGTGATTTACAGTACGATCCCCTTGGCTTCT
GCCCTGACGATGACGAGGACTTTATCACCATGCGCACGAAGGAGCTGAAT
AATGGCCGCATGGCGATGATTGCCGTCATTGGCATTATTGCCCAGGAGAT
TGTGACGGGCGTCCCTATTGTTAAGTCCATCTTTGGATAAATATCTGATG
ATGTGTGTGTGTGTGCGTGAGAAAGAGAAAGCAAGAAGGGACTCAAAAAA
AGAAAATAAAAGAGATATGGAGAAGCAGTGTATGTGTGTGTGTTCGTATG
TTTGTTTGAAAATATGCTGTGATAAAACTGGTTTGTGTGGGTCCGTGCGT
TGGCAGTGGCGTCATATGAACTTGTGTTGAGTGTGTTTTATCTTAACAAA
GAAGCAGACACAAGAGATTAAGAAGAGTAAATGAAATCAGGCCAAATGCT
AT back to topCoding sequence (CDS) from alignment at chr7:859492..861643- >NO07G03080.1 ID=NO07G03080.1|Name=NO07G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr7:859492..861643- (Nannochloropsis oceanica) ATGCACGCGTCGTTGTTCTGGAATGCACGACAAAATCTCACTAGCTCCCA CCTCAAAAATATCCACATCTCTTATAGTAATTCTACCATGATCGCTACGC GTGCCTTGCTCTGCCTGGCCCTACCGGCCTTGGCCTCCGCCTTCGTTAGC CGTGCCCCCACTGCTGTGACCCGCGCCTCTGCTCCTGTGAAGGGCCGCAC AGTGGTAATGGAGTCCATCTCGGACTTCCTCAAGTTTGATGCGAAGCTCG GCGAGCTGGAAGTGACCAAGGCTGGCGTCTCCGCTCCCTTCGGTTTCTTC GATCCCTTAAACTTTTACGGCGGCCAAAGCACCCGCACCAAGAAGAAGTT CCGTGAGTCAGAGCTCAAGCACGGCCGCGTCGCTATGATGGCCGTGGCTG GCATTTTTTTTCAAGAAATCTGGCACCCGTTGTTGGCGGGGGATGACTTC GAGACAGCGCTGGACCAATACTATGGAGTGACGGAGTTTATACCTGATTT TGGCCTGGGGGCGATGTTTGTGTTGTCGTTGTTCGAATTCAAGAGCATTG CCAAGGGCTGGGACCCGATTGAAGAGACGCTTAAGAACCCAAAAATTGCT GGCATGCGCGACGACTACGTGGCAGGTGATTTACAGTACGATCCCCTTGG CTTCTGCCCTGACGATGACGAGGACTTTATCACCATGCGCACGAAGGAGC TGAATAATGGCCGCATGGCGATGATTGCCGTCATTGGCATTATTGCCCAG GAGATTGTGACGGGCGTCCCTATTGTTAAGTCCATCTTTGGATAA back to top
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