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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:724810..726768 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02500.1 vs.
Match: EWM27083.1 (histidyl-trna synthetase [Nannochloropsis gaditana]) HSP 1 Score: 720.7 bits (1859), Expect = 3.700e-204 Identity = 383/529 (72.40%), Postives = 427/529 (80.72%), Query Frame = 0
Query: 54 SSSQSVLVTIFLAAACAIFMKAATCLAWRCYGAAAGRRASVSEV-PLLSRRLPSSASLVRVRSLGHQTLMASDAADGGRASAAVKQDSNKRADKKGTSQPQKAKLDLQPPRGTRDFYPEEMRLRNWLFGHWRQVAREHGFEEYDAPVLESEALYVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVLPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGISGVEAEAELLAAIVSFFARVGLTANDVGIKVNSRGVLTEVLAALGVPEENFAATCVLVDKLEKIPLSAIQDDLTALGLEESVVLRLLEVIQSKDVEGLEKAIGKDSAALGQLRQLFEYARAYGFDDWLVLDASVVRGLAYYTGVVFEAFDRQGELRAICGGGRYDKLLEAFGGEALPAVGFGFGDAVIIELLESKKLVPALPLRLDASVFAMETGLQTTAIAAATSLRSAGLMVDLQLEARKTKWAFKHADRLGATYVVLVGAGEAAEGKVKVKHMATGQQETLPVVDLGNWMLA 582
SS+++ T LA C + MK TC AW G A R +S + PLL R+ +S H ++ A+ AA+G R SAAV QD R T + ++ KLDL PPRGTRDFYPE+MR R+WLF WRQVAR+H FEEYDAPVLESE L+VRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLV+PVKWFSFPQCWRYERMTRGRRREHYQWNMDVWG+SGVEAEAELL+AI +FF RVGLTA DVGIKV+SRGVL EVLAAL VP+ F+ATCVLVDKLEK+PL AIQ DLTALGLEESVV RLL+V+QS+D LE AIG S AL QLRQLFEYARAY F++WLVLDASVVRGLAYYTG+VFEAFDR+GELRAICGGGRYDKLLE FGGEALPAVGFGFGDAVI+ELLESK LVP+L L LDA VFAME GLQ AI AATSLR+AGL VDLQLEARKTKWA KHADRLGATYVV+VG E A V+VK MATGQQ + + +L +W+ A
Sbjct: 11 SSTRTQDFTTLLAVFC-VLMKVTTCRAWHYSGRIATSRQMLSGIGPLLRRKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQDLKNRE----TQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISA 534
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02500.1 ID=NO07G02500.1|Name=NO07G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1876bp AGCAGGATTCAATTGTGTATTTTTATGTTTACTCACTTTTAATGAGAAGT CAGGCTTACACTCTCACAAACACGTTCTTTCGGCTTGCGCACAGGTGTCT TTTTGTCGGGTTGGGCGCCTTTTGTGTGGTGCAACCTGTCCACAAGCCCC TCATCTCCTTTCTGCTTCCCATGACCAAACGCGTGCGTGGTGCCTCTAGC AGCAGTAGCCAGAGCGTCCTTGTCACCATCTTCTTGGCTGCGGCCTGCGC TATTTTCATGAAGGCCGCAACATGCCTAGCCTGGAGGTGTTATGGCGCGG CGGCGGGCAGAAGAGCCTCGGTGTCCGAAGTCCCCCTTTTGTCACGCCGT CTCCCCTCCTCCGCTAGCCTCGTCAGGGTCAGAAGCCTTGGGCACCAGAC CCTTATGGCGTCAGATGCCGCAGATGGCGGACGCGCTAGTGCTGCTGTCA AACAGGACTCTAATAAGAGAGCCGACAAGAAAGGCACAAGCCAACCACAG AAGGCCAAGCTCGACCTCCAACCTCCCCGGGGCACGCGAGACTTCTATCC CGAAGAAATGCGCCTGCGCAATTGGCTCTTTGGACATTGGCGGCAAGTGG CAAGGGAGCATGGCTTTGAGGAATATGATGCCCCTGTGCTTGAATCAGAA GCTCTATATGTCCGCAAGGCCGGGGAGGAAGTGACAGAACAACTCTACAA TTTTGAGGATAAGGGAGGGCGGCGTGTGGCTTTACGTCCGGAGATGACCC CGTCGTTGGCACGGATGGTGATGGCGAAGAGGAACGGGCTAGTCTTGCCT GTCAAGTGGTTTTCGTTTCCCCAGTGCTGGCGGTATGAACGCATGACCAG AGGTCGTCGTCGCGAGCATTACCAATGGAACATGGACGTGTGGGGCATAT CAGGAGTGGAAGCTGAAGCAGAGCTTCTTGCTGCAATTGTCAGCTTCTTT GCGCGCGTAGGACTCACGGCAAATGATGTGGGAATTAAGGTGAATAGCCG AGGAGTGTTGACAGAGGTCCTTGCTGCTTTAGGTGTACCAGAGGAGAATT TTGCAGCTACCTGTGTGTTGGTCGATAAATTGGAGAAGATACCGTTAAGT GCGATTCAGGACGATTTGACGGCATTGGGCTTGGAGGAGTCAGTAGTGCT CCGGTTGCTAGAGGTGATCCAAAGTAAGGATGTGGAGGGCTTAGAAAAGG CGATTGGCAAGGATTCGGCGGCCTTGGGTCAGCTTAGACAATTATTTGAA TATGCACGCGCGTATGGATTCGATGATTGGTTGGTGCTAGATGCGAGCGT GGTGAGGGGCTTGGCGTACTATACTGGGGTGGTGTTCGAGGCCTTTGATC GACAGGGGGAACTGAGGGCAATATGTGGGGGAGGAAGGTATGATAAATTG TTGGAAGCTTTCGGAGGGGAGGCGCTGCCAGCCGTAGGGTTTGGATTTGG TGACGCGGTGATCATAGAATTGCTTGAGAGTAAGAAGCTAGTGCCCGCGT TGCCGCTAAGGTTGGATGCGTCGGTGTTTGCGATGGAGACGGGGTTGCAG ACGACGGCGATTGCGGCGGCCACGTCGTTAAGGAGTGCGGGGCTGATGGT TGACCTGCAGTTGGAGGCGCGCAAGACTAAGTGGGCATTTAAGCATGCCG ATCGTCTAGGTGCGACATATGTGGTGTTGGTGGGGGCGGGAGAGGCGGCG GAGGGCAAGGTAAAGGTGAAGCACATGGCCACTGGGCAGCAAGAAACGTT GCCTGTCGTGGACCTTGGTAATTGGATGTTGGCAGCTTCGGCGGCCTCAG CAGGTGTGATGCACCCATAATGACAAGAATCTCTATAATTTATGAATGCA ACAAGGAAAAAGAGACGTTCATGCTG back to topprotein sequence of NO07G02500.1 >NO07G02500.1-protein ID=NO07G02500.1-protein|Name=NO07G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp MRSQAYTLTNTFFRLAHRCLFVGLGAFCVVQPVHKPLISFLLPMTKRVRG ASSSSSQSVLVTIFLAAACAIFMKAATCLAWRCYGAAAGRRASVSEVPLL SRRLPSSASLVRVRSLGHQTLMASDAADGGRASAAVKQDSNKRADKKGTS QPQKAKLDLQPPRGTRDFYPEEMRLRNWLFGHWRQVAREHGFEEYDAPVL ESEALYVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGL VLPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGISGVEAEAELLAAIV SFFARVGLTANDVGIKVNSRGVLTEVLAALGVPEENFAATCVLVDKLEKI PLSAIQDDLTALGLEESVVLRLLEVIQSKDVEGLEKAIGKDSAALGQLRQ LFEYARAYGFDDWLVLDASVVRGLAYYTGVVFEAFDRQGELRAICGGGRY DKLLEAFGGEALPAVGFGFGDAVIIELLESKKLVPALPLRLDASVFAMET GLQTTAIAAATSLRSAGLMVDLQLEARKTKWAFKHADRLGATYVVLVGAG EAAEGKVKVKHMATGQQETLPVVDLGNWMLAASAASAGVMHP* back to topmRNA from alignment at chr7:724810..726768- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02500.1 ID=NO07G02500.1|Name=NO07G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp|location=Sequence derived from alignment at chr7:724810..726768- (Nannochloropsis oceanica) AGCAGGATTCAATTGTGTATTTTTATGTTTACTCACTTTTAATGAGAAGT
CAGGCTTACACTCTCACAAACACGTTCTTTCGGCTTGCGCACAGGTGTCT
TTTTGTCGGGTTGGGCGCCTTTTGTGTGGTGCAACCTGTCCACAAGCCCC
TCATCTCCTTTCTGCTTCCCATGACCAAACGCGTGCGTGGTGCCTCTAGC
AGCAGTAGCCAGAGCGTCCTTGTCACCATCTTCTTGGCTGCGGCCTGCGC
TATTTTCATGAAGGCCGCAACATGCCTAGCCTGGAGGTGTTATGGCGCGG
CGGCGGGCAGAAGAGCCTCGGTGTCCGAAGTCCCCCTTTTGTCACGCCGT
CTCCCCTCCTCCGCTAGCCTCGTCAGGGTCAGAAGCCTTGGGCACCAGAC
CCTTATGGCGTCAGATGCCGCAGATGGCGGACGCGCTAGTGCTGCTGTCA
AACAGGACTCTAATAAGAGGTGCGTCTTGAGGATGGCAGGAGGGGAAACG
AAAATGCGTGCGTCTTACTGACTCCTTTTAACCAAATCTCAACCCACCGC
AGAGCCGACAAGAAAGGCACAAGCCAACCACAGAAGGCCAAGCTCGACCT
CCAACCTCCCCGGGGCACGCGAGACTTCTATCCCGAAGAAATGCGCCTGC
GCAATTGGCTCTTTGGACATTGGCGGCAAGTGGCAAGGGAGCATGGCTTT
GAGGAATATGATGCCCCTGTGCTTGAATCAGAAGCTCTATATGTCCGCAA
GGCCGGGGAGGAAGTGACAGAACAACTCTACAATTTTGAGGATAAGGGAG
GGCGGCGTGTGGCTTTACGTCCGGAGATGACCCCGTCGTTGGCACGGATG
GTGATGGCGAAGAGGAACGGGCTAGTCTTGCCTGTCAAGTGGTTTTCGTT
TCCCCAGTGCTGGCGGTATGAACGCATGACCAGAGGTCGTCGTCGCGAGC
ATTACCAATGGAACATGGACGTGTGGGGCATATCAGGAGTGGAAGCTGAA
GCAGAGCTTCTTGCTGCAATTGTCAGCTTCTTTGCGCGCGTAGGACTCAC
GGCAAATGATGTGGGAATTAAGGTGAATAGCCGAGGAGTGTTGACAGAGG
TCCTTGCTGCTTTAGGTGTACCAGAGGAGAATTTTGCAGCTACCTGTGTG
TTGGTCGATAAATTGGAGAAGATACCGTTAAGTGCGATTCAGGACGATTT
GACGGCATTGGGCTTGGAGGAGTCAGTAGTGCTCCGGTTGCTAGAGGTGA
TCCAAAGTAAGGATGTGGAGGGCTTAGAAAAGGCGATTGGCAAGGATTCG
GCGGCCTTGGGTCAGCTTAGACAATTATTTGAATATGCACGCGCGTATGG
ATTCGATGATTGGTTGGTGCTAGATGCGAGCGTGGTGAGGGGCTTGGCGT
ACTATACTGGGGTGGTGTTCGAGGCCTTTGATCGACAGGGGGAACTGAGG
GCAATATGTGGGGGAGGAAGGTATGATAAATTGTTGGAAGCTTTCGGAGG
GGAGGCGCTGCCAGCCGTAGGGTTTGGATTTGGTGACGCGGTGATCATAG
AATTGCTTGAGAGTAAGAAGCTAGTGCCCGCGTTGCCGCTAAGGTTGGAT
GCGTCGGTGTTTGCGATGGAGACGGGGTTGCAGACGACGGCGATTGCGGC
GGCCACGTCGTTAAGGAGTGCGGGGCTGATGGTTGACCTGCAGTTGGAGG
CGCGCAAGACTAAGTGGGCATTTAAGCATGCCGATCGTCTAGGTGCGACA
TATGTGGTGTTGGTGGGGGCGGGAGAGGCGGCGGAGGGCAAGGTAAAGGT
GAAGCACATGGCCACTGGGCAGCAAGAAACGTTGCCTGTCGTGGACCTTG
GTAATTGGATGTTGGCAGCTTCGGCGGCCTCAGCAGGTGTGATGCACCCA
TAATGACAAGAATCTCTATAATTTATGAATGCAACAAGGAAAAAGAGACG
TTCATGCTG back to topCoding sequence (CDS) from alignment at chr7:724810..726768- >NO07G02500.1 ID=NO07G02500.1|Name=NO07G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr7:724810..726768- (Nannochloropsis oceanica) ATGAGAAGTCAGGCTTACACTCTCACAAACACGTTCTTTCGGCTTGCGCA CAGGTGTCTTTTTGTCGGGTTGGGCGCCTTTTGTGTGGTGCAACCTGTCC ACAAGCCCCTCATCTCCTTTCTGCTTCCCATGACCAAACGCGTGCGTGGT GCCTCTAGCAGCAGTAGCCAGAGCGTCCTTGTCACCATCTTCTTGGCTGC GGCCTGCGCTATTTTCATGAAGGCCGCAACATGCCTAGCCTGGAGGTGTT ATGGCGCGGCGGCGGGCAGAAGAGCCTCGGTGTCCGAAGTCCCCCTTTTG TCACGCCGTCTCCCCTCCTCCGCTAGCCTCGTCAGGGTCAGAAGCCTTGG GCACCAGACCCTTATGGCGTCAGATGCCGCAGATGGCGGACGCGCTAGTG CTGCTGTCAAACAGGACTCTAATAAGAGAGCCGACAAGAAAGGCACAAGC CAACCACAGAAGGCCAAGCTCGACCTCCAACCTCCCCGGGGCACGCGAGA CTTCTATCCCGAAGAAATGCGCCTGCGCAATTGGCTCTTTGGACATTGGC GGCAAGTGGCAAGGGAGCATGGCTTTGAGGAATATGATGCCCCTGTGCTT GAATCAGAAGCTCTATATGTCCGCAAGGCCGGGGAGGAAGTGACAGAACA ACTCTACAATTTTGAGGATAAGGGAGGGCGGCGTGTGGCTTTACGTCCGG AGATGACCCCGTCGTTGGCACGGATGGTGATGGCGAAGAGGAACGGGCTA GTCTTGCCTGTCAAGTGGTTTTCGTTTCCCCAGTGCTGGCGGTATGAACG CATGACCAGAGGTCGTCGTCGCGAGCATTACCAATGGAACATGGACGTGT GGGGCATATCAGGAGTGGAAGCTGAAGCAGAGCTTCTTGCTGCAATTGTC AGCTTCTTTGCGCGCGTAGGACTCACGGCAAATGATGTGGGAATTAAGGT GAATAGCCGAGGAGTGTTGACAGAGGTCCTTGCTGCTTTAGGTGTACCAG AGGAGAATTTTGCAGCTACCTGTGTGTTGGTCGATAAATTGGAGAAGATA CCGTTAAGTGCGATTCAGGACGATTTGACGGCATTGGGCTTGGAGGAGTC AGTAGTGCTCCGGTTGCTAGAGGTGATCCAAAGTAAGGATGTGGAGGGCT TAGAAAAGGCGATTGGCAAGGATTCGGCGGCCTTGGGTCAGCTTAGACAA TTATTTGAATATGCACGCGCGTATGGATTCGATGATTGGTTGGTGCTAGA TGCGAGCGTGGTGAGGGGCTTGGCGTACTATACTGGGGTGGTGTTCGAGG CCTTTGATCGACAGGGGGAACTGAGGGCAATATGTGGGGGAGGAAGGTAT GATAAATTGTTGGAAGCTTTCGGAGGGGAGGCGCTGCCAGCCGTAGGGTT TGGATTTGGTGACGCGGTGATCATAGAATTGCTTGAGAGTAAGAAGCTAG TGCCCGCGTTGCCGCTAAGGTTGGATGCGTCGGTGTTTGCGATGGAGACG GGGTTGCAGACGACGGCGATTGCGGCGGCCACGTCGTTAAGGAGTGCGGG GCTGATGGTTGACCTGCAGTTGGAGGCGCGCAAGACTAAGTGGGCATTTA AGCATGCCGATCGTCTAGGTGCGACATATGTGGTGTTGGTGGGGGCGGGA GAGGCGGCGGAGGGCAAGGTAAAGGTGAAGCACATGGCCACTGGGCAGCA AGAAACGTTGCCTGTCGTGGACCTTGGTAATTGGATGTTGGCAGCTTCGG CGGCCTCAGCAGGTGTGATGCACCCATAA back to top
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