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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:688206..689886 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02330.1 vs.
Match: EWM27183.1 (hypothetical protein Naga_100010g72 [Nannochloropsis gaditana]) HSP 1 Score: 162.9 bits (411), Expect = 2.500e-36 Identity = 154/438 (35.16%), Postives = 197/438 (44.98%), Query Frame = 0
Query: 5 DTTTRLFTVLWAEDKVEEPVMPEEGLEEEEEQHWGSASS----TPHRVVFCDVDVKFKPQRAFLYRSHGFFHQVALTSTNTLSRLGQGEYELTFRQCDGYIPSPRFLRFFVGPFSTSSSSSSSPPPPTIDRSEPLYVGTIIMHELRFPFLRSLVPGLSALGAIVVTLVFGLRILQKRRSTCRIEREMKKSSTTSTSRVGSPMALS-SSFSSSCSGIQLKTKEEMSFEKEPGGAAELSSGDKDSVELLVQLPESDARPKDFPKVSPTSDTDGEESVFGGFGLS-LPQPLREKDPCYYHKHIKNLQVRQHVQYQQAEEQPVRRSPLTPYGT--PLTPQRAI---------DHPLARLPRPGSAFSISPS--SPASAFALIDSPRGAEGGEKAGPGAVPGAAAAATEDEVMMREERRRHGGDVEGEGENLGWVNEYWSLEG 424
DTT+RLF+V WA+ + + ++EE G A R+ CDVD+K+K A+++RSHGFF+QVALTSTNTLSRL G Y L FRQC GY PSPR LRF V S++S P + E LY+G + M +L F F RS+ PG+SA+ ++ L+FGLR LQKR+ R R + T ST V S + + SS SS+ SG+ LKT E S E + SG KV P D S F S PLR K H QH + E R S + T P+ QR D ++ P S SP SP+ + SP + G P P A A + E + E EG E LGWV EYWS EG
Sbjct: 7 DTTSRLFSVRWADRTGDNTAQDHK---KQEEVGRGEAMDGEEVVSRRITLCDVDIKYKSPAAYVFRSHGFFYQVALTSTNTLSRLNPGTYVLNFRQCQGYKPSPRSLRFHVPALSSTSF------PLFALKDEDLYIGVVTMQKLHFQFPRSVAPGVSAIVVAILALLFGLRTLQKRQKP-RSRRATSSAPTISTPVVTSESSFNLSSSSSATSGLALKTSGETSQEDH----LAVGSG----------------------KVPPVWDLSRHGSSKNVFSSSHAGDPLRSKSI-----HELEQSYAQHEDEALSHEARERPSGVEKPRTTAPMYQQRQTMRNVEVNGRDSYPPKIYIPSSTLICSPPLPSPSELASTTSSPPSSAVGSSE-PAPRPPAEATCFDGEAGGQGEAEVTN---EGNEETLGWVEEYWSFEG 399
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02330.1 ID=NO07G02330.1|Name=NO07G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp AACATCAGGGAATAAATCAAGCTTTACAGCGATAGCAGCTACAGCAAGCG CATAACCCTGCCATGGCCGTAGATGACACGACCACTCGTCTTTTCACTGT CCTATGGGCTGAAGATAAGGTAGAGGAACCCGTGATGCCCGAGGAGGGGC TGGAGGAGGAGGAGGAGCAACACTGGGGGTCGGCTTCCTCTACGCCGCAC CGCGTGGTCTTCTGTGATGTTGATGTCAAATTCAAGCCGCAAAGGGCCTT TCTCTACCGATCGCATGGCTTTTTTCACCAGGTGGCCCTGACGTCGACTA ACACGCTCTCTAGACTGGGTCAAGGAGAGTACGAACTCACCTTCCGTCAA TGCGATGGGTATATCCCCTCGCCGCGCTTTCTCCGCTTTTTCGTGGGGCC CTTCTCAACCTCATCCTCCTCCTCAAGCTCCCCTCCCCCTCCTACCATCG ACCGTAGCGAGCCCCTCTATGTTGGCACCATAATCATGCACGAGCTGCGC TTTCCATTCCTCCGCTCTCTCGTCCCTGGTTTAAGTGCCCTAGGAGCCAT AGTGGTCACCCTCGTGTTTGGTCTCCGAATTTTGCAGAAAAGGCGCAGCA CATGTCGAATCGAAAGGGAAATGAAGAAATCTTCAACCACCAGCACCTCC CGGGTAGGCTCTCCGATGGCACTCTCCTCTTCCTTTTCCTCCTCATGCTC CGGAATCCAGCTCAAGACGAAGGAGGAAATGTCTTTTGAGAAGGAGCCAG GAGGAGCAGCAGAATTGTCATCAGGAGATAAGGACAGCGTCGAGCTGCTG GTGCAGCTGCCGGAAAGTGACGCGCGGCCGAAGGATTTCCCGAAAGTGTC CCCCACCTCTGACACAGACGGAGAGGAAAGCGTCTTTGGGGGTTTCGGGT TGAGTCTGCCGCAGCCACTGCGAGAGAAAGACCCTTGCTATTACCACAAG CACATCAAAAACCTGCAGGTCCGTCAACACGTGCAGTATCAGCAGGCAGA AGAACAGCCGGTGCGCCGTTCTCCTCTGACTCCTTATGGCACACCTCTGA CTCCTCAGAGGGCAATCGACCACCCGCTCGCTCGGCTCCCGCGCCCGGGA TCTGCATTTTCCATATCACCCTCCTCTCCGGCCTCGGCTTTTGCGCTGAT TGATTCGCCGAGAGGCGCGGAAGGAGGAGAAAAAGCAGGGCCAGGAGCAG TGCCAGGAGCAGCAGCGGCAGCAACGGAAGATGAGGTGATGATGCGCGAA GAGAGACGGCGACATGGAGGAGACGTAGAGGGGGAGGGAGAAAACTTGGG GTGGGTGAATGAGTACTGGTCGTTGGAGGGATCGGCATCTTGCAGGAGAT CGTGGACGAGAGATGAGGAGGAAAGCCCGAGGGGAGGGTTGGAGAAGGCG GAGGCAACGGAGGAGGGAGGGGGACAGGAAGGGCAGGATGTTGCCCGTTT CCTAAAGCGAACGGGTGAGGATGCAGAGCAGGGCGATAGGGTGGAGCGCT GGTTTAAAGACGGAAGCAAGCAAGAAGAGGACTGAGGAAGATGTGTAAGT TTCAACTGGGCGAACGGGCGATAGAGAGAGAGTGTCTTGTGTATCCCACG ATGACACGCAGAAAGACAAAAGAGAAAGACACAGATCATAACCAAACGGA TGTGATAAAATGAACTTCAAAAAATGTGGAT back to topprotein sequence of NO07G02330.1 >NO07G02330.1-protein ID=NO07G02330.1-protein|Name=NO07G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp MAVDDTTTRLFTVLWAEDKVEEPVMPEEGLEEEEEQHWGSASSTPHRVVF CDVDVKFKPQRAFLYRSHGFFHQVALTSTNTLSRLGQGEYELTFRQCDGY IPSPRFLRFFVGPFSTSSSSSSSPPPPTIDRSEPLYVGTIIMHELRFPFL RSLVPGLSALGAIVVTLVFGLRILQKRRSTCRIEREMKKSSTTSTSRVGS PMALSSSFSSSCSGIQLKTKEEMSFEKEPGGAAELSSGDKDSVELLVQLP ESDARPKDFPKVSPTSDTDGEESVFGGFGLSLPQPLREKDPCYYHKHIKN LQVRQHVQYQQAEEQPVRRSPLTPYGTPLTPQRAIDHPLARLPRPGSAFS ISPSSPASAFALIDSPRGAEGGEKAGPGAVPGAAAAATEDEVMMREERRR HGGDVEGEGENLGWVNEYWSLEGSASCRRSWTRDEEESPRGGLEKAEATE EGGGQEGQDVARFLKRTGEDAEQGDRVERWFKDGSKQEED* back to topmRNA from alignment at chr7:688206..689886- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02330.1 ID=NO07G02330.1|Name=NO07G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp|location=Sequence derived from alignment at chr7:688206..689886- (Nannochloropsis oceanica) AACATCAGGGAATAAATCAAGCTTTACAGCGATAGCAGCTACAGCAAGCG
CATAACCCTGCCATGGCCGTAGATGACACGACCACTCGTCTTTTCACTGT
CCTATGGGCTGAAGATAAGGTAGAGGAACCCGTGATGCCCGAGGAGGGGC
TGGAGGAGGAGGAGGAGCAACACTGGGGGTCGGCTTCCTCTACGCCGCAC
CGCGTGGTCTTCTGTGATGTTGATGTCAAATTCAAGCCGCAAAGGGCCTT
TCTCTACCGATCGCATGGCTTTTTTCACCAGGTGGCCCTGACGTCGACTA
ACACGCTCTCTAGACTGGGTCAAGGAGAGTACGAACTCACCTTCCGTCAA
TGCGATGGGTATATCCCCTCGCCGCGCTTTCTCCGCTTTTTCGTGGGGCC
CTTCTCAACCTCATCCTCCTCCTCAAGCTCCCCTCCCCCTCCTACCATCG
ACCGTAGCGAGCCCCTCTATGTTGGCACCATAATCATGCACGAGCTGCGC
TTTCCATTCCTCCGCTCTCTCGTCCCTGGTTTAAGTGCCCTAGGAGCCAT
AGTGGTCACCCTCGTGTTTGGTCTCCGAATTTTGCAGAAAAGGCGCAGCA
CATGTCGAATCGAAAGGGAAATGAAGAAATCTTCAACCACCAGCACCTCC
CGGGTAGGCTCTCCGATGGCACTCTCCTCTTCCTTTTCCTCCTCATGCTC
CGGAATCCAGCTCAAGACGAAGGAGGAAATGTCTTTTGAGAAGGAGCCAG
GAGGAGCAGCAGAATTGTCATCAGGAGATAAGGACAGCGTCGAGCTGCTG
GTGCAGCTGCCGGAAAGTGACGCGCGGCCGAAGGATTTCCCGAAAGTGTC
CCCCACCTCTGACACAGACGGAGAGGAAAGCGTCTTTGGGGGTTTCGGGT
TGAGTCTGCCGCAGCCACTGCGAGAGAAAGACCCTTGCTATTACCACAAG
CACATCAAAAACCTGCAGGTCCGTCAACACGTGCAGTATCAGCAGGCAGA
AGAACAGCCGGTGCGCCGTTCTCCTCTGACTCCTTATGGCACACCTCTGA
CTCCTCAGAGGGCAATCGACCACCCGCTCGCTCGGCTCCCGCGCCCGGGA
TCTGCATTTTCCATATCACCCTCCTCTCCGGCCTCGGCTTTTGCGCTGAT
TGATTCGCCGAGAGGCGCGGAAGGAGGAGAAAAAGCAGGGCCAGGAGCAG
TGCCAGGAGCAGCAGCGGCAGCAACGGAAGATGAGGTGATGATGCGCGAA
GAGAGACGGCGACATGGAGGAGACGTAGAGGGGGAGGGAGAAAACTTGGG
GTGGGTGAATGAGTACTGGTCGTTGGAGGGATCGGCATCTTGCAGGAGAT
CGTGGACGAGAGATGAGGAGGAAAGCCCGAGGGGAGGGTTGGAGAAGGCG
GAGGCAACGGAGGAGGGAGGGGGACAGGAAGGGCAGGATGTTGCCCGTTT
CCTAAAGCGAACGGGTGAGGATGCAGAGCAGGGCGATAGGGTGGAGCGCT
GGTTTAAAGACGGAAGCAAGCAAGAAGAGGACTGAGGAAGATGTGTAAGT
TTCAACTGGGCGAACGGGCGATAGAGAGAGAGTGTCTTGTGTATCCCACG
ATGACACGCAGAAAGACAAAAGAGAAAGACACAGATCATAACCAAACGGA
TGTGATAAAATGAACTTCAAAAAATGTGGAT back to topCoding sequence (CDS) from alignment at chr7:688206..689886- >NO07G02330.1 ID=NO07G02330.1|Name=NO07G02330.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr7:688206..689886- (Nannochloropsis oceanica) ATGGCCGTAGATGACACGACCACTCGTCTTTTCACTGTCCTATGGGCTGA AGATAAGGTAGAGGAACCCGTGATGCCCGAGGAGGGGCTGGAGGAGGAGG AGGAGCAACACTGGGGGTCGGCTTCCTCTACGCCGCACCGCGTGGTCTTC TGTGATGTTGATGTCAAATTCAAGCCGCAAAGGGCCTTTCTCTACCGATC GCATGGCTTTTTTCACCAGGTGGCCCTGACGTCGACTAACACGCTCTCTA GACTGGGTCAAGGAGAGTACGAACTCACCTTCCGTCAATGCGATGGGTAT ATCCCCTCGCCGCGCTTTCTCCGCTTTTTCGTGGGGCCCTTCTCAACCTC ATCCTCCTCCTCAAGCTCCCCTCCCCCTCCTACCATCGACCGTAGCGAGC CCCTCTATGTTGGCACCATAATCATGCACGAGCTGCGCTTTCCATTCCTC CGCTCTCTCGTCCCTGGTTTAAGTGCCCTAGGAGCCATAGTGGTCACCCT CGTGTTTGGTCTCCGAATTTTGCAGAAAAGGCGCAGCACATGTCGAATCG AAAGGGAAATGAAGAAATCTTCAACCACCAGCACCTCCCGGGTAGGCTCT CCGATGGCACTCTCCTCTTCCTTTTCCTCCTCATGCTCCGGAATCCAGCT CAAGACGAAGGAGGAAATGTCTTTTGAGAAGGAGCCAGGAGGAGCAGCAG AATTGTCATCAGGAGATAAGGACAGCGTCGAGCTGCTGGTGCAGCTGCCG GAAAGTGACGCGCGGCCGAAGGATTTCCCGAAAGTGTCCCCCACCTCTGA CACAGACGGAGAGGAAAGCGTCTTTGGGGGTTTCGGGTTGAGTCTGCCGC AGCCACTGCGAGAGAAAGACCCTTGCTATTACCACAAGCACATCAAAAAC CTGCAGGTCCGTCAACACGTGCAGTATCAGCAGGCAGAAGAACAGCCGGT GCGCCGTTCTCCTCTGACTCCTTATGGCACACCTCTGACTCCTCAGAGGG CAATCGACCACCCGCTCGCTCGGCTCCCGCGCCCGGGATCTGCATTTTCC ATATCACCCTCCTCTCCGGCCTCGGCTTTTGCGCTGATTGATTCGCCGAG AGGCGCGGAAGGAGGAGAAAAAGCAGGGCCAGGAGCAGTGCCAGGAGCAG CAGCGGCAGCAACGGAAGATGAGGTGATGATGCGCGAAGAGAGACGGCGA CATGGAGGAGACGTAGAGGGGGAGGGAGAAAACTTGGGGTGGGTGAATGA GTACTGGTCGTTGGAGGGATCGGCATCTTGCAGGAGATCGTGGACGAGAG ATGAGGAGGAAAGCCCGAGGGGAGGGTTGGAGAAGGCGGAGGCAACGGAG GAGGGAGGGGGACAGGAAGGGCAGGATGTTGCCCGTTTCCTAAAGCGAAC GGGTGAGGATGCAGAGCAGGGCGATAGGGTGGAGCGCTGGTTTAAAGACG GAAGCAAGCAAGAAGAGGACTGA back to top
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