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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:685417..688205 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02320.1 vs.
Match: EWM27210.1 (rme1-like gtpase atpase without a c-terminal eh domain protein [Nannochloropsis gaditana]) HSP 1 Score: 786.6 bits (2030), Expect = 5.900e-224 Identity = 412/578 (71.28%), Postives = 456/578 (78.89%), Query Frame = 0
Query: 65 LLRSSSTRPTIRLDGQPRF-----LSSTSSIPKPISSHGSTISQDSQRRILQRCDELQSYLQPINDRLRGPLEKCSDKAPLLPFVFLLGNHSSGKSSFINFVCKRPIQTAGVAPTDDSFTIIAPGPSDIDQDGPSIVGDPDMGFAGLRHFGPDLIHHTQLKIRSGLATPDFMLVDSPGMIDSPHAAANYQSPSSHVTGGGYKGGVPRPPNHLDRGYDFGGVCRWFADRADVILLFFDPDKPGTTGETLSVLTQPLAGMDHKLYIVLNKADQFRRIQDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPAAFQRQQEHQQPQGQDT-YGGDKEASSLGLGLTDLEKSREEVVSEVLKAPKRRIDNVITRLADSVNLVQMHALVLEGLRSDFARELWTFRAGVAGLLMAGTGFVGGGLYLGLALQPMLAFGALYTVGTVGFVYTNNRVLGEHEALLASPEGLRRAFERLYARPVLEGDEFVTSLWKRTFPSLQMMVETQAGIGGGGLGGLPKVSTAELQEMQRILHEEIPSLRRLAAPVSWTFKNNSGSSTGGSSGSSGGGALGE------RKSGRNWADT 631
LLRS S +P++ RF L + S ++H TI DSQRR+LQRCDELQSYLQPINDRLRGPLEKCSDKAPLLPFVFLLGNHSSGKSSF+N+VC RPIQTAGVAPTDDSFTIIAPGP+DIDQDGPS +GDPDMGFAGLRHFGPDLIHHTQLKIR+GLAT +FMLVDSPGMIDSPHA+A+ SPSS ++ NHLDRGYDF GVCRWFADRADVILLFFDPDKPGTTGETLS+LTQ LAGMDHKLYIVLNKADQFR+I DFARAYGSLCWNLSKVIPRKDLPRIYTMCLPAA+QRQQ + + + E S GLGL DLE+SREEVV EVLKAPKRRIDNVITRLADSV+LVQMHALVLE LR+DFARELW FRAG A L +AG G VGGG+YLG+A Q +LAF LY +G GFVY N ++L EH A+LASPEGLR FERLYARPV+EGDEFV SLWKRTFPSLQ+M+ TQ G LG LPKVS AELQE+Q IL EE+P+LRRLAAPVSWTF + G G +G+ + GRN A T
Sbjct: 43 LLRSGSPKPSLLT--LLRFVRRLPLERSLSTDDGNTTHSGTIKLDSQRRVLQRCDELQSYLQPINDRLRGPLEKCSDKAPLLPFVFLLGNHSSGKSSFVNYVCNRPIQTAGVAPTDDSFTIIAPGPTDIDQDGPSTIGDPDMGFAGLRHFGPDLIHHTQLKIRAGLATTEFMLVDSPGMIDSPHASASQPSPSSLISASDKGDNTRSARNHLDRGYDFQGVCRWFADRADVILLFFDPDKPGTTGETLSILTQSLAGMDHKLYIVLNKADQFRKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPAAYQRQQTSRSSRPAALGIESEIEGPSSGLGLADLERSREEVVGEVLKAPKRRIDNVITRLADSVHLVQMHALVLEALRNDFARELWRFRAGAASLCLAGMGAVGGGMYLGVAFQTILAFSVLYALGAGGFVYANEKMLKEHAAVLASPEGLRLIFERLYARPVMEGDEFVNSLWKRTFPSLQIMLNTQV---GRDLGKLPKVSKAELQEIQCILEEEVPALRRLAAPVSWTFSKYTKDRDGMPERGGKFGEIGQVRPYCHGRQGRNHAST 615
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02320.1 ID=NO07G02320.1|Name=NO07G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2651bp TGGGGCAGGACGTCGAATTCCTGTGTATGGGGTGTGGTCGTTGCGGGAGA GGGGGAGATGCATGAAGGAGACAATCAATTCAGGTTAAGCGTCCCAAAAC AGCCATTGCTGCATAAGTAGCCGCTTTCAGTGATTCGTCTACGTCCCTCA GTGCCCGCAGCCTGTCGGACCACGGTGCTGTGGTGCTTTTTGACCAGGGA AAGGTGCGCGCCCGGGGTCAAGCCCACGGAAATGGGCGAGCACCGGCGAG CGATACACATAGCTTCAGCGATATGCGACACTCTACGGTCCTTTCGGCAT TGCCAAGTTCTATACTTGTTGTGTGTGTAGACGGGGACTGAGTGTGATAT CTTGCGTGGACTCTGTGCATGGCCCTTCTCACTCGAGCTTGTTTCGGGGA AGAGAATCATCTTTGCAATGAAGAATAGACTCTATTCTAGTAGTGTCACG AATGTCATGTCATCTGTCAGTTCCTTCTTGCGCGTCATCATCCCTCGTGG TTGTGTTCCCCGCGCCTATCACTCACTTTCCACAAACAGACACAGGACTG GAGGCCATGCTTTGCCGGTCGGGGGGGCGCAGGGCGATGTCCTGGGCGTG CTCTCCGTCTTCAAACGATAATCCTGCCTTGCGACGCCTAGGACTGCTTC GGAGCAGCAGCACCAGGCCCACCATCCGCCTGGACGGCCAGCCCCGATTT TTAAGCAGCACAAGCTCGATTCCCAAGCCCATCAGTTCTCATGGCAGCAC TATCAGCCAAGACAGCCAGCGGCGCATTTTGCAGCGCTGCGACGAGCTCC AGTCATACCTTCAGCCCATCAACGACAGACTCCGCGGACCCTTGGAAAAG TGCAGCGATAAAGCTCCCTTGCTGCCGTTTGTTTTTTTGTTGGGTAACCA CAGCAGCGGCAAAAGTTCTTTTATCAATTTTGTGTGTAAGCGACCGATTC AGACCGCGGGCGTGGCACCCACGGACGACAGCTTTACCATTATTGCGCCC GGTCCCAGTGATATTGATCAGGACGGGCCGTCTATTGTGGGAGATCCAGA CATGGGCTTTGCGGGTCTGCGGCATTTTGGTCCTGATTTGATTCATCACA CACAGCTCAAGATTCGATCAGGGTTGGCGACGCCTGACTTTATGTTGGTG GATTCCCCGGGAATGATTGACAGTCCGCATGCTGCCGCGAATTACCAGAG CCCGTCCTCACATGTGACAGGAGGAGGGTATAAAGGTGGGGTGCCGCGGC CTCCGAATCACTTGGACCGTGGCTATGACTTTGGTGGGGTTTGTAGGTGG TTTGCTGACAGGGCGGATGTCATTCTTTTGTTTTTTGACCCGGACAAACC AGGCACAACGGGAGAGACTCTTTCTGTACTCACGCAGCCTTTGGCGGGGA TGGACCATAAGTTGTACATTGTCTTGAACAAAGCGGATCAATTCCGACGG ATTCAAGATTTTGCCCGAGCGTACGGTTCGTTGTGTTGGAACTTGTCCAA GGTCATCCCTCGGAAGGACCTCCCCCGTATCTATACCATGTGCTTGCCCG CGGCCTTTCAACGGCAGCAGGAGCACCAACAACCGCAAGGACAAGACACG TACGGCGGCGACAAGGAGGCATCTTCCCTAGGCCTAGGATTGACAGACTT AGAAAAGAGTCGAGAGGAAGTTGTAAGCGAGGTGCTCAAGGCCCCTAAAC GGCGCATTGACAACGTCATTACCCGCTTGGCCGACTCCGTCAACCTAGTC CAAATGCACGCCCTGGTCCTCGAAGGCCTGCGAAGCGATTTTGCCCGCGA GCTCTGGACTTTTCGAGCAGGCGTTGCAGGGCTATTGATGGCAGGGACGG GCTTCGTGGGTGGGGGTCTTTATCTGGGGTTAGCGCTGCAGCCAATGCTG GCTTTTGGGGCGCTGTACACGGTCGGGACGGTGGGGTTTGTGTATACGAA TAACCGAGTTCTCGGTGAGCACGAGGCGTTGTTGGCGAGTCCGGAGGGAT TGCGGAGGGCATTTGAGCGTTTGTATGCAAGACCGGTGTTGGAGGGGGAT GAGTTTGTCACGTCGTTGTGGAAGCGGACCTTCCCGTCTTTGCAGATGAT GGTGGAGACACAGGCCGGGATAGGGGGGGGAGGGTTGGGGGGCTTGCCGA AGGTGAGCACGGCGGAGCTGCAGGAGATGCAGCGGATCCTTCACGAGGAG ATTCCCTCGCTCCGTCGGTTAGCGGCACCTGTTTCATGGACCTTCAAGAA CAACAGCGGCAGCAGCACCGGCGGCAGTAGTGGTAGCAGTGGGGGGGGGG CTTTGGGGGAAAGGAAGTCGGGAAGGAATTGGGCAGACACAGCCCTTGGT AGCCAGTAGTAGGATCTGCAGCAGCAACCGTAGAAGTAGTATGGTTGAGA GGGCGTCATATCTGTATAATTCCATTCCTGCTCTAGTAGACCAGCATCCT TTCGGCTCACCGCCAGCACCTTGAATAGTTGTCTGGTCCTCGCGCTTGTA CGCATGAACATAAACAACGAGAAACAATTCGGATTTATGACAGGAAGATC ATTAGTTGCTAAATTCGGTTCACTCCTGCTCCACATCCTCCCATTACCAG CGTCGTAGGGAAGCCGGGCAAGAAAAGCCAATTATGATTGAGTGTTGCTA T back to topprotein sequence of NO07G02320.1 >NO07G02320.1-protein ID=NO07G02320.1-protein|Name=NO07G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp MSCHLSVPSCASSSLVVVFPAPITHFPQTDTGLEAMLCRSGGRRAMSWAC SPSSNDNPALRRLGLLRSSSTRPTIRLDGQPRFLSSTSSIPKPISSHGST ISQDSQRRILQRCDELQSYLQPINDRLRGPLEKCSDKAPLLPFVFLLGNH SSGKSSFINFVCKRPIQTAGVAPTDDSFTIIAPGPSDIDQDGPSIVGDPD MGFAGLRHFGPDLIHHTQLKIRSGLATPDFMLVDSPGMIDSPHAAANYQS PSSHVTGGGYKGGVPRPPNHLDRGYDFGGVCRWFADRADVILLFFDPDKP GTTGETLSVLTQPLAGMDHKLYIVLNKADQFRRIQDFARAYGSLCWNLSK VIPRKDLPRIYTMCLPAAFQRQQEHQQPQGQDTYGGDKEASSLGLGLTDL EKSREEVVSEVLKAPKRRIDNVITRLADSVNLVQMHALVLEGLRSDFARE LWTFRAGVAGLLMAGTGFVGGGLYLGLALQPMLAFGALYTVGTVGFVYTN NRVLGEHEALLASPEGLRRAFERLYARPVLEGDEFVTSLWKRTFPSLQMM VETQAGIGGGGLGGLPKVSTAELQEMQRILHEEIPSLRRLAAPVSWTFKN NSGSSTGGSSGSSGGGALGERKSGRNWADTALGSQ* back to topmRNA from alignment at chr7:685417..688205+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02320.1 ID=NO07G02320.1|Name=NO07G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2789bp|location=Sequence derived from alignment at chr7:685417..688205+ (Nannochloropsis oceanica) TGGGGCAGGACGTCGAATTCCTGTGTATGGGGTGTGGTCGTTGCGGGAGA
GGGGGAGATGCATGAAGGAGACAATCAATTCAGGTTAAGCGTCCCAAAAC
AGCCATTGCTGCATAAGTAGCCGCTTTCAGTGATTCGTCTACGTCCCTCA
GTGCCCGCAGCCTGTCGGACCACGGTGCTGTGGTGCTTTTTGACCAGGGA
AAGGTGCGCGCCCGGGGTCAAGCCCACGGAAATGGGCGAGCACCGGCGAG
CGATACACATAGCTTCAGCGATATGCGACACTCTACGGTCCTTTCGGCAT
TGCCAAGTTCTATACTTGTTGTGTGTGTAGACGGGGACTGAGTGTGATAT
CTTGCGTGGACTCTGTGCATGGCCCTTCTCACTCGAGCTTGTTTCGGGGA
AGAGAATCATCTTTGCAATGAAGAATAGACTCTATTCTAGTAGTGTCACG
AATGTCATGTCATCTGTCAGTTCCTTCTTGCGCGTCATCATCCCTCGTGG
TTGTGTTCCCCGCGCCTATCACTCACTTTCCACAAACAGACACAGGACTG
GAGGCCATGCTTTGCCGGTCGGGGGGGCGCAGGGCGATGTCCTGGGCGTG
CTCTCCGTCTTCAAACGATAATCCTGCCTTGCGACGCCTAGGACTGCTTC
GGAGCAGCAGCACCAGGCCCACCATCCGCCTGGACGGCCAGCCCCGATTT
TTAAGCAGCACAAGCTCGATTCCCAAGCCCATCAGTTCTCATGGCAGCAC
TATCAGCCAAGACAGCCAGCGGCGCATTTTGCAGCGCTGCGACGAGCTCC
AGTCATACCTTCAGGTAGGGAAAGGAAGAGTGGAGTGAGAGGGGAGAGCG
AATATTTAAACCTGCCACTCCCCCCCTCATTTCACCCCTCCCTTGCTACA
TACTCAACCCACCATCTTTTCTTTAACATCTTTGATCCTCCCCCCCTTCC
AGCCCATCAACGACAGACTCCGCGGACCCTTGGAAAAGTGCAGCGATAAA
GCTCCCTTGCTGCCGTTTGTTTTTTTGTTGGGTAACCACAGCAGCGGCAA
AAGTTCTTTTATCAATTTTGTGTGTAAGCGACCGATTCAGACCGCGGGCG
TGGCACCCACGGACGACAGCTTTACCATTATTGCGCCCGGTCCCAGTGAT
ATTGATCAGGACGGGCCGTCTATTGTGGGAGATCCAGACATGGGCTTTGC
GGGTCTGCGGCATTTTGGTCCTGATTTGATTCATCACACACAGCTCAAGA
TTCGATCAGGGTTGGCGACGCCTGACTTTATGTTGGTGGATTCCCCGGGA
ATGATTGACAGTCCGCATGCTGCCGCGAATTACCAGAGCCCGTCCTCACA
TGTGACAGGAGGAGGGTATAAAGGTGGGGTGCCGCGGCCTCCGAATCACT
TGGACCGTGGCTATGACTTTGGTGGGGTTTGTAGGTGGTTTGCTGACAGG
GCGGATGTCATTCTTTTGTTTTTTGACCCGGACAAACCAGGCACAACGGG
AGAGACTCTTTCTGTACTCACGCAGCCTTTGGCGGGGATGGACCATAAGT
TGTACATTGTCTTGAACAAAGCGGATCAATTCCGACGGATTCAAGATTTT
GCCCGAGCGTACGGTTCGTTGTGTTGGAACTTGTCCAAGGTCATCCCTCG
GAAGGACCTCCCCCGTATCTATACCATGTGCTTGCCCGCGGCCTTTCAAC
GGCAGCAGGAGCACCAACAACCGCAAGGACAAGACACGTACGGCGGCGAC
AAGGAGGCATCTTCCCTAGGCCTAGGATTGACAGACTTAGAAAAGAGTCG
AGAGGAAGTTGTAAGCGAGGTGCTCAAGGCCCCTAAACGGCGCATTGACA
ACGTCATTACCCGCTTGGCCGACTCCGTCAACCTAGTCCAAATGCACGCC
CTGGTCCTCGAAGGCCTGCGAAGCGATTTTGCCCGCGAGCTCTGGACTTT
TCGAGCAGGCGTTGCAGGGCTATTGATGGCAGGGACGGGCTTCGTGGGTG
GGGGTCTTTATCTGGGGTTAGCGCTGCAGCCAATGCTGGCTTTTGGGGCG
CTGTACACGGTCGGGACGGTGGGGTTTGTGTATACGAATAACCGAGTTCT
CGGTGAGCACGAGGCGTTGTTGGCGAGTCCGGAGGGATTGCGGAGGGCAT
TTGAGCGTTTGTATGCAAGACCGGTGTTGGAGGGGGATGAGTTTGTCACG
TCGTTGTGGAAGCGGACCTTCCCGTCTTTGCAGATGATGGTGGAGACACA
GGCCGGGATAGGGGGGGGAGGGTTGGGGGGCTTGCCGAAGGTGAGCACGG
CGGAGCTGCAGGAGATGCAGCGGATCCTTCACGAGGAGATTCCCTCGCTC
CGTCGGTTAGCGGCACCTGTTTCATGGACCTTCAAGAACAACAGCGGCAG
CAGCACCGGCGGCAGTAGTGGTAGCAGTGGGGGGGGGGCTTTGGGGGAAA
GGAAGTCGGGAAGGAATTGGGCAGACACAGCCCTTGGTAGCCAGTAGTAG
GATCTGCAGCAGCAACCGTAGAAGTAGTATGGTTGAGAGGGCGTCATATC
TGTATAATTCCATTCCTGCTCTAGTAGACCAGCATCCTTTCGGCTCACCG
CCAGCACCTTGAATAGTTGTCTGGTCCTCGCGCTTGTACGCATGAACATA
AACAACGAGAAACAATTCGGATTTATGACAGGAAGATCATTAGTTGCTAA
ATTCGGTTCACTCCTGCTCCACATCCTCCCATTACCAGCGTCGTAGGGAA
GCCGGGCAAGAAAAGCCAATTATGATTGAGTGTTGCTAT back to topCoding sequence (CDS) from alignment at chr7:685417..688205+ >NO07G02320.1 ID=NO07G02320.1|Name=NO07G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at chr7:685417..688205+ (Nannochloropsis oceanica) ATGTCATGTCATCTGTCAGTTCCTTCTTGCGCGTCATCATCCCTCGTGGT TGTGTTCCCCGCGCCTATCACTCACTTTCCACAAACAGACACAGGACTGG AGGCCATGCTTTGCCGGTCGGGGGGGCGCAGGGCGATGTCCTGGGCGTGC TCTCCGTCTTCAAACGATAATCCTGCCTTGCGACGCCTAGGACTGCTTCG GAGCAGCAGCACCAGGCCCACCATCCGCCTGGACGGCCAGCCCCGATTTT TAAGCAGCACAAGCTCGATTCCCAAGCCCATCAGTTCTCATGGCAGCACT ATCAGCCAAGACAGCCAGCGGCGCATTTTGCAGCGCTGCGACGAGCTCCA GTCATACCTTCAGCCCATCAACGACAGACTCCGCGGACCCTTGGAAAAGT GCAGCGATAAAGCTCCCTTGCTGCCGTTTGTTTTTTTGTTGGGTAACCAC AGCAGCGGCAAAAGTTCTTTTATCAATTTTGTGTGTAAGCGACCGATTCA GACCGCGGGCGTGGCACCCACGGACGACAGCTTTACCATTATTGCGCCCG GTCCCAGTGATATTGATCAGGACGGGCCGTCTATTGTGGGAGATCCAGAC ATGGGCTTTGCGGGTCTGCGGCATTTTGGTCCTGATTTGATTCATCACAC ACAGCTCAAGATTCGATCAGGGTTGGCGACGCCTGACTTTATGTTGGTGG ATTCCCCGGGAATGATTGACAGTCCGCATGCTGCCGCGAATTACCAGAGC CCGTCCTCACATGTGACAGGAGGAGGGTATAAAGGTGGGGTGCCGCGGCC TCCGAATCACTTGGACCGTGGCTATGACTTTGGTGGGGTTTGTAGGTGGT TTGCTGACAGGGCGGATGTCATTCTTTTGTTTTTTGACCCGGACAAACCA GGCACAACGGGAGAGACTCTTTCTGTACTCACGCAGCCTTTGGCGGGGAT GGACCATAAGTTGTACATTGTCTTGAACAAAGCGGATCAATTCCGACGGA TTCAAGATTTTGCCCGAGCGTACGGTTCGTTGTGTTGGAACTTGTCCAAG GTCATCCCTCGGAAGGACCTCCCCCGTATCTATACCATGTGCTTGCCCGC GGCCTTTCAACGGCAGCAGGAGCACCAACAACCGCAAGGACAAGACACGT ACGGCGGCGACAAGGAGGCATCTTCCCTAGGCCTAGGATTGACAGACTTA GAAAAGAGTCGAGAGGAAGTTGTAAGCGAGGTGCTCAAGGCCCCTAAACG GCGCATTGACAACGTCATTACCCGCTTGGCCGACTCCGTCAACCTAGTCC AAATGCACGCCCTGGTCCTCGAAGGCCTGCGAAGCGATTTTGCCCGCGAG CTCTGGACTTTTCGAGCAGGCGTTGCAGGGCTATTGATGGCAGGGACGGG CTTCGTGGGTGGGGGTCTTTATCTGGGGTTAGCGCTGCAGCCAATGCTGG CTTTTGGGGCGCTGTACACGGTCGGGACGGTGGGGTTTGTGTATACGAAT AACCGAGTTCTCGGTGAGCACGAGGCGTTGTTGGCGAGTCCGGAGGGATT GCGGAGGGCATTTGAGCGTTTGTATGCAAGACCGGTGTTGGAGGGGGATG AGTTTGTCACGTCGTTGTGGAAGCGGACCTTCCCGTCTTTGCAGATGATG GTGGAGACACAGGCCGGGATAGGGGGGGGAGGGTTGGGGGGCTTGCCGAA GGTGAGCACGGCGGAGCTGCAGGAGATGCAGCGGATCCTTCACGAGGAGA TTCCCTCGCTCCGTCGGTTAGCGGCACCTGTTTCATGGACCTTCAAGAAC AACAGCGGCAGCAGCACCGGCGGCAGTAGTGGTAGCAGTGGGGGGGGGGC TTTGGGGGAAAGGAAGTCGGGAAGGAATTGGGCAGACACAGCCCTTGGTA GCCAGTAG back to top
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