NO07G02140.1, NO07G02140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02140.1
Unique NameNO07G02140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1097
Alignment locationchr7:636232..637328 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:636232..637328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02140.1 vs.
Match: EWM27184.1 (vacuolar protein sorting-associated protein 25 [Nannochloropsis gaditana])

HSP 1 Score: 293.5 bits (750), Expect = 4.700e-76
Identity = 135/173 (78.03%), Postives = 156/173 (90.17%), Query Frame = 0 
Query:   17 LPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVADA 190
            LPEYH FPPFFTLQPV+ETRK+QL+LWRELVL+WHQA+G+Q L LNEWPLFANP INRTL L  R+EVVQ +V+SGHAEWKD+ +TTA V+WRS QE+AAS+L F+R NGMAGNVYTVY+L +GDEIT GADFHGT+PTIFRRALE+LE+QGKAALFKG+S E DGIKFVADA
Sbjct:   12 LPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVADA 184
The following BLAST results are available for this feature:
BLAST of NO07G02140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27184.14.700e-7678.03vacuolar protein sorting-associated protein 25 [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02140NO07G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02140.1NO07G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02140.1.cds1NO07G02140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02140.1 ID=NO07G02140.1|Name=NO07G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1097bp
TATTATATTGCTTCAAAAGAATAATAAGTTCTAAGGACTACATTTGGCAT
AGGGTTCCCAAAGAATAAAACGGCAACAAGAGGTCAACTCCAAGTACTAT
CTTTGTTTTGCTTACTGGCTCTACAGCTGAGCCAAACTCGGGGTGCCGAT
GGCCCCCAGACTTCCCCTCTCCTCCTCAGCACGCTGATCTTTTTTCTCTT
GAGGGGAGGTTGAGGATGTTATCGCAACGACAGCGCCACTTTTATGCATC
ATGCATGATAATAACAACACACAACCTACAGGCTATCTCCTCCCCTAGCT
ACGTCAGATTATTCCTCTCGCCCTCCTCTGACTTATCCTATTTTCCGCCC
GAGCCCCTCAGATTTTGTCTGGGGCTCCACGTCGATTCCCCCGGCCTCAG
CTTTTTCTTCTACACAAAAGCAACAAATGGCAACCACCACGTCCACGTCC
CCCATCGTCCTGGCAGACACCAGCCTGCCGGAGTACCATGCCTTCCCGCC
CTTTTTTACACTTCAGCCCGTCGTGGAAACTCGGAAGATCCAGCTTCGGC
TATGGCGGGAGCTGGTGCTACGGTGGCATCAAGCCCGGGGCATACAAAAC
CTAAACCTTAACGAGTGGCCGCTCTTTGCCAACCCTATCATCAATCGTAC
CTTATCCTTGAAGGCACGCCAGGAGGTGGTGCAGGGCATGGTGGCGAGCG
GGCACGCAGAATGGAAAGACGAGTATAAGACCACGGCCTTTGTCATGTGG
CGGTCCCCGCAAGAAATTGCAGCCTCCGTCCTGGACTTTGTGCGGAGAAA
TGGAATGGCTGGCAATGTGTACACGGTATATGATTTGTACTCTGGAGATG
AGATAACTGCGGGCGCAGATTTTCATGGCACGGACCCTACCATTTTTCGA
CGTGCCCTGGAATTATTAGAGCAGCAAGGCAAGGCAGCCTTGTTCAAAGG
AGCGTCGTCGGAAGAAGATGGCATTAAGTTTGTCGCGGATGCCTAGGCAA
CATTTTGGGAGTGAGAATAACATAACATTTAAGTGTGAAAATACCAACGG
TGATTTCGATTGCAAAAGTATGGAAGAAATAAAGTACTTGAGGAAAG
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protein sequence of NO07G02140.1

>NO07G02140.1-protein ID=NO07G02140.1-protein|Name=NO07G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MATTTSTSPIVLADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRW
HQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEY
KTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFH
GTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVADA*
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mRNA from alignment at chr7:636232..637328+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02140.1 ID=NO07G02140.1|Name=NO07G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1097bp|location=Sequence derived from alignment at chr7:636232..637328+ (Nannochloropsis oceanica)
TATTATATTGCTTCAAAAGAATAATAAGTTCTAAGGACTACATTTGGCAT
AGGGTTCCCAAAGAATAAAACGGCAACAAGAGGTCAACTCCAAGTACTAT
CTTTGTTTTGCTTACTGGCTCTACAGCTGAGCCAAACTCGGGGTGCCGAT
GGCCCCCAGACTTCCCCTCTCCTCCTCAGCACGCTGATCTTTTTTCTCTT
GAGGGGAGGTTGAGGATGTTATCGCAACGACAGCGCCACTTTTATGCATC
ATGCATGATAATAACAACACACAACCTACAGGCTATCTCCTCCCCTAGCT
ACGTCAGATTATTCCTCTCGCCCTCCTCTGACTTATCCTATTTTCCGCCC
GAGCCCCTCAGATTTTGTCTGGGGCTCCACGTCGATTCCCCCGGCCTCAG
CTTTTTCTTCTACACAAAAGCAACAAATGGCAACCACCACGTCCACGTCC
CCCATCGTCCTGGCAGACACCAGCCTGCCGGAGTACCATGCCTTCCCGCC
CTTTTTTACACTTCAGCCCGTCGTGGAAACTCGGAAGATCCAGCTTCGGC
TATGGCGGGAGCTGGTGCTACGGTGGCATCAAGCCCGGGGCATACAAAAC
CTAAACCTTAACGAGTGGCCGCTCTTTGCCAACCCTATCATCAATCGTAC
CTTATCCTTGAAGGCACGCCAGGAGGTGGTGCAGGGCATGGTGGCGAGCG
GGCACGCAGAATGGAAAGACGAGTATAAGACCACGGCCTTTGTCATGTGG
CGGTCCCCGCAAGAAATTGCAGCCTCCGTCCTGGACTTTGTGCGGAGAAA
TGGAATGGCTGGCAATGTGTACACGGTATATGATTTGTACTCTGGAGATG
AGATAACTGCGGGCGCAGATTTTCATGGCACGGACCCTACCATTTTTCGA
CGTGCCCTGGAATTATTAGAGCAGCAAGGCAAGGCAGCCTTGTTCAAAGG
AGCGTCGTCGGAAGAAGATGGCATTAAGTTTGTCGCGGATGCCTAGGCAA
CATTTTGGGAGTGAGAATAACATAACATTTAAGTGTGAAAATACCAACGG
TGATTTCGATTGCAAAAGTATGGAAGAAATAAAGTACTTGAGGAAAG
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Coding sequence (CDS) from alignment at chr7:636232..637328+

>NO07G02140.1 ID=NO07G02140.1|Name=NO07G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at chr7:636232..637328+ (Nannochloropsis oceanica)
ATGGCAACCACCACGTCCACGTCCCCCATCGTCCTGGCAGACACCAGCCT
GCCGGAGTACCATGCCTTCCCGCCCTTTTTTACACTTCAGCCCGTCGTGG
AAACTCGGAAGATCCAGCTTCGGCTATGGCGGGAGCTGGTGCTACGGTGG
CATCAAGCCCGGGGCATACAAAACCTAAACCTTAACGAGTGGCCGCTCTT
TGCCAACCCTATCATCAATCGTACCTTATCCTTGAAGGCACGCCAGGAGG
TGGTGCAGGGCATGGTGGCGAGCGGGCACGCAGAATGGAAAGACGAGTAT
AAGACCACGGCCTTTGTCATGTGGCGGTCCCCGCAAGAAATTGCAGCCTC
CGTCCTGGACTTTGTGCGGAGAAATGGAATGGCTGGCAATGTGTACACGG
TATATGATTTGTACTCTGGAGATGAGATAACTGCGGGCGCAGATTTTCAT
GGCACGGACCCTACCATTTTTCGACGTGCCCTGGAATTATTAGAGCAGCA
AGGCAAGGCAGCCTTGTTCAAAGGAGCGTCGTCGGAAGAAGATGGCATTA
AGTTTGTCGCGGATGCCTAG
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Synonyms
Publications