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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:288993..290484 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00880.1 vs.
Match: EWM27287.1 (hypothetical protein Naga_100080g3 [Nannochloropsis gaditana]) HSP 1 Score: 207.6 bits (527), Expect = 5.500e-50 Identity = 103/161 (63.98%), Postives = 127/161 (78.88%), Query Frame = 0
Query: 141 MPLVYSSLLLPGSRNQSPPAWPFCVGSFAFGFFAMGPYLALRSFQPSPGATPSNRMVARFVENKLPAALAFISSLYLVYLVVGGGGGGGGVGGLEAYLTLFRTQTLPHVSSLDLLILSVFVADPMREDMLRRGWYSGGKLAAFVSVPVVGPCLYLLLRPAL 302
MP VY+SLLL GSR+Q PPAWPF + SFA GFFA+GPYLALR ++P P ++ + R +E+KLPA LAF++SLYL +L+V G GG EAYL+LF +QTLPHVSSLDL +LS+FV DP+REDM+RR WYS G+L AFV++PVVGPCLYLLLRP L
Sbjct: 1 MPFVYTSLLLSGSRDQIPPAWPFTLASFALGFFALGPYLALRRYRPFPDTAHASPWLTRVMESKLPALLAFLASLYLAWLIVDGLVSAGG---REAYLSLFYSQTLPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCLYLLLRPTL 158
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00880.1 ID=NO07G00880.1|Name=NO07G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp GGTTGTGGTAGTTGTAGCGATGTGGGTGTCAGTCCATGTTGCAGGCGTGG TACGCATTCGGAGACTATCTCCCTTCGATAGACACAAGATGATGACGCTC GGTGACGTTCCGATCATCTGCCGACTCCACCTCAGACCTCCCTTTGGTGT CCAAAGCCCACATATTGGACCGACCCAAAGCCTCAGCAAGCGAAAGCCAT ACGACAAGAAGACCTTGAGCCACGATTGTGTTAACTAACAGGTCTTTGTC CATTCGCTCCTCCCTCTTCACATACATACAATACAGGGAACACGTGACCT TTCCTTACCTCCCCACCTTTACGTGCGCGCAAGCCGACCAGGATGAAGGC TTCCTACCGCTTCTCAACGATTGTCTTGGTGGTGGCGGCGACACTCAGTT TTGTGGCAAGCTTTCAACTTCCTTTTAGTAGCCGATCGGGTATCAGACCA CTCGCGCTTTCGAGACGCACGGCCCCAATCCCTACCCACCATTACTCCTC CCCTGTCCTGCGCGCCTCGTCCAGAGAAAGCACGCCTGGAGACGAAATAG GCGAGAGCAACACTCCCGAAAGCCGGGGGCCTCGTACTCTTATCACAGCC CTAGCTTGGGCTGGCTTTGTGGCTTACGCCTTCCTTTTGGCGCCCGGCAA GGATCCCGCCTCCACGGCCCTTGATGCTCAACTCCTGAAGGACATCATTG GCAACCCCTTTTCCCCAACCCTTCCCCCCATATTTCTTGCCATCTTCAAC GCCTTGGGCCTCATGCCCCTCGTCTATTCCTCTCTCCTCCTCCCGGGCTC TCGAAACCAATCTCCTCCGGCCTGGCCTTTTTGCGTCGGCTCGTTCGCTT TTGGCTTCTTTGCCATGGGGCCATACCTCGCCTTGCGTAGCTTCCAGCCC TCCCCTGGCGCCACGCCTTCGAACCGTATGGTGGCTCGTTTTGTCGAGAA TAAGCTGCCAGCTGCTCTCGCATTCATTTCTTCCCTGTACTTGGTGTATT TGGTCGTCGGGGGAGGAGGAGGAGGGGGAGGAGTGGGAGGGTTGGAGGCG TACCTTACGCTATTCAGGACGCAGACATTGCCGCACGTGTCCTCTTTAGA TTTGTTGATTTTGTCCGTATTCGTGGCGGATCCGATGAGAGAGGACATGC TTAGGAGGGGTTGGTATAGCGGGGGAAAGCTGGCGGCGTTTGTGAGCGTG CCGGTGGTAGGACCATGCCTGTATCTATTGCTACGGCCGGCGTTATCCGT CGATGAGGAGGAGGAAGTGTGAATGAGAGAGGCGTCAAACATTAAGACCG AGGAGGCGTGAGAAACTCTTGATGAAACGTGGGAAATCAATACGAATGCT AACGCGCC back to topprotein sequence of NO07G00880.1 >NO07G00880.1-protein ID=NO07G00880.1-protein|Name=NO07G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp MKASYRFSTIVLVVAATLSFVASFQLPFSSRSGIRPLALSRRTAPIPTHH YSSPVLRASSRESTPGDEIGESNTPESRGPRTLITALAWAGFVAYAFLLA PGKDPASTALDAQLLKDIIGNPFSPTLPPIFLAIFNALGLMPLVYSSLLL PGSRNQSPPAWPFCVGSFAFGFFAMGPYLALRSFQPSPGATPSNRMVARF VENKLPAALAFISSLYLVYLVVGGGGGGGGVGGLEAYLTLFRTQTLPHVS SLDLLILSVFVADPMREDMLRRGWYSGGKLAAFVSVPVVGPCLYLLLRPA LSVDEEEEV* back to topmRNA from alignment at chr7:288993..290484- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00880.1 ID=NO07G00880.1|Name=NO07G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp|location=Sequence derived from alignment at chr7:288993..290484- (Nannochloropsis oceanica) GGTTGTGGTAGTTGTAGCGATGTGGGTGTCAGTCCATGTTGCAGGCGTGG
TACGCATTCGGAGACTATCTCCCTTCGATAGACACAAGATGATGACGCTC
GGTGACGTTCCGATCATCTGCCGACTCCACCTCAGACCTCCCTTTGGTGT
CCAAAGCCCACATATTGGACCGACCCAAAGCCTCAGCAAGCGAAAGCCAT
ACGACAAGAAGACCTTGAGCCACGATTGTGTTAACTAACAGGTCTTTGTC
CATTCGCTCCTCCCTCTTCACATACATACAATACAGGGAACACGTGACCT
TTCCTTACCTCCCCACCTTTACGTGCGCGCAAGCCGACCAGGATGAAGGC
TTCCTACCGCTTCTCAACGATTGTCTTGGTGGTGGCGGCGACACTCAGTT
TTGTGGCAAGCTTTCAACTTCCTTTTAGTAGCCGATCGGGTATCAGACCA
CTCGCGCTTTCGAGACGCACGGCCCCAATCCCTACCCACCATTACTCCTC
CCCTGTCCTGCGCGCCTCGTCCAGAGAAAGCACGCCTGGAGACGAAATAG
GCGAGAGCAACACTCCCGAAAGCCGGGGGCCTCGTACTCTTATCACAGCC
CTAGCTTGGGCTGGCTTTGTGGCTTACGCCTTCCTTTTGGCGCCCGGCAA
GGATCCCGCCTCCACGGCCCTTGATGCTCAACTCCTGAAGGTTAGTTTTC
CAAGCATGGTGCGAGTGCCTACTGTCAAAACATCTGTCAGTCTCCTACCG
TTTTACATCCGCCACTTATCAACGCTTTTCTCCCTCCTTGCCGCTCCATC
CTTGACAAATTTACCCTTTTTCAGGACATCATTGGCAACCCCTTTTCCCC
AACCCTTCCCCCCATATTTCTTGCCATCTTCAACGCCTTGGGCCTCATGC
CCCTCGTCTATTCCTCTCTCCTCCTCCCGGGCTCTCGAAACCAATCTCCT
CCGGCCTGGCCTTTTTGCGTCGGCTCGTTCGCTTTTGGCTTCTTTGCCAT
GGGGCCATACCTCGCCTTGCGTAGCTTCCAGCCCTCCCCTGGCGCCACGC
CTTCGAACCGTATGGTGGCTCGTTTTGTCGAGAATAAGCTGCCAGCTGCT
CTCGCATTCATTTCTTCCCTGTACTTGGTGTATTTGGTCGTCGGGGGAGG
AGGAGGAGGGGGAGGAGTGGGAGGGTTGGAGGCGTACCTTACGCTATTCA
GGACGCAGACATTGCCGCACGTGTCCTCTTTAGATTTGTTGATTTTGTCC
GTATTCGTGGCGGATCCGATGAGAGAGGACATGCTTAGGAGGGGTTGGTA
TAGCGGGGGAAAGCTGGCGGCGTTTGTGAGCGTGCCGGTGGTAGGACCAT
GCCTGTATCTATTGCTACGGCCGGCGTTATCCGTCGATGAGGAGGAGGAA
GTGTGAATGAGAGAGGCGTCAAACATTAAGACCGAGGAGGCGTGAGAAAC
TCTTGATGAAACGTGGGAAATCAATACGAATGCTAACGCGCC back to topCoding sequence (CDS) from alignment at chr7:288993..290484- >NO07G00880.1 ID=NO07G00880.1|Name=NO07G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr7:288993..290484- (Nannochloropsis oceanica) ATGAAGGCTTCCTACCGCTTCTCAACGATTGTCTTGGTGGTGGCGGCGAC ACTCAGTTTTGTGGCAAGCTTTCAACTTCCTTTTAGTAGCCGATCGGGTA TCAGACCACTCGCGCTTTCGAGACGCACGGCCCCAATCCCTACCCACCAT TACTCCTCCCCTGTCCTGCGCGCCTCGTCCAGAGAAAGCACGCCTGGAGA CGAAATAGGCGAGAGCAACACTCCCGAAAGCCGGGGGCCTCGTACTCTTA TCACAGCCCTAGCTTGGGCTGGCTTTGTGGCTTACGCCTTCCTTTTGGCG CCCGGCAAGGATCCCGCCTCCACGGCCCTTGATGCTCAACTCCTGAAGGA CATCATTGGCAACCCCTTTTCCCCAACCCTTCCCCCCATATTTCTTGCCA TCTTCAACGCCTTGGGCCTCATGCCCCTCGTCTATTCCTCTCTCCTCCTC CCGGGCTCTCGAAACCAATCTCCTCCGGCCTGGCCTTTTTGCGTCGGCTC GTTCGCTTTTGGCTTCTTTGCCATGGGGCCATACCTCGCCTTGCGTAGCT TCCAGCCCTCCCCTGGCGCCACGCCTTCGAACCGTATGGTGGCTCGTTTT GTCGAGAATAAGCTGCCAGCTGCTCTCGCATTCATTTCTTCCCTGTACTT GGTGTATTTGGTCGTCGGGGGAGGAGGAGGAGGGGGAGGAGTGGGAGGGT TGGAGGCGTACCTTACGCTATTCAGGACGCAGACATTGCCGCACGTGTCC TCTTTAGATTTGTTGATTTTGTCCGTATTCGTGGCGGATCCGATGAGAGA GGACATGCTTAGGAGGGGTTGGTATAGCGGGGGAAAGCTGGCGGCGTTTG TGAGCGTGCCGGTGGTAGGACCATGCCTGTATCTATTGCTACGGCCGGCG TTATCCGTCGATGAGGAGGAGGAAGTGTGA back to top
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