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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:1231484..1233587 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04400.2 vs.
Match: WP_043368948.1 (carbohydrate kinase [Cyanobium sp. PCC 7001]) HSP 1 Score: 375.9 bits (964), Expect = 1.300e-100 Identity = 203/344 (59.01%), Postives = 234/344 (68.02%), Query Frame = 0
Query: 6 ASPKVLCYGEALVDRLGPLGGDPATDLP--VDDRLGGAPANVACGLSRLGTPAAFLGRLGEDEIGRQFKKVFQQRHVNTQALQWDPSRPSRIVLVKRDVCGDREFGGFTGDAANSGFADQGVDPLALLPALP---SFLPAAEWLLVGTLPLGSALSAEALRAAVRWAGQAGVRLALDINWRPTFWEGHSQPSEGPSAMAQAAIRPLLQQADLIKFAKEEAEWLFDGETDPSSISEALPHKPAVLVTDGGGMLRWTMGGGGRERGRVGEMEAFRVNAVDTTGAGDAFVAGLLHGLVADPSVLEGGGGGGKVEEMVRFACGCGALVCQGAGAIDPQPTVEEVQAFL 345
ASP VLC GEALVDRLGP GGDPAT P +DDRLGGAPANVAC L+RLGTP AFLGRLG+D IG F +F R VNT ALQWDP RPSR+VLV+RD GDR+FGGF GD + GFAD+ ++ L AL L A WLLVGT+PL +A ALR AV A AGV +A+D+NWRPTFW+G + P PS Q I LL QA L+K A EEA WLF G T P ++ +ALP +PAV+VTDG +RWT G GE+ AF V DTTGAGDAF AG+LHGL A PS+L G G V E++RFA CGALVCQ GAIDPQP+ E V FL
Sbjct: 3 ASPSVLCLGEALVDRLGPPGGDPATADPDQIDDRLGGAPANVACALARLGTPVAFLGRLGQDPIGEAFAGLFAGRGVNTAALQWDPRRPSRVVLVRRDRQGDRQFGGFAGDRGD-GFADEALEAEPLAAALAGDGGLLHGAAWLLVGTIPLARPAAAAALRRAVALAAAAGVAIAVDVNWRPTFWDGAAAPDAPPSEAQQQLILELLGQAALVKCAAEEALWLF-GRTSPEAVRQALPRRPAVVVTDGANPVRWTFGAA------TGELAAFLVAVADTTGAGDAFTAGVLHGLCARPSLLRGEDPAG-VVELIRFASACGALVCQAPGAIDPQPSAEAVAGFL 337
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04400.2 ID=NO06G04400.2|Name=NO06G04400.2|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp
AAAAGACACAGCGTGTATGCCAAGCTGCACGATGACGGTAACGACAACGA
TACCGCTAAGAAGACGGCAAAACGGGACGTTGACGTCTCTAAATCGCGGG
CAACAACCAACGGCCCTCTCAAAGCTACTGCTGCTCACCCTCCTCCTCCT
GCCTTCGCTTGAGGTAACGTAATTCCCCTGTCTACGTGTCCGCTCTCTCG
CCGCCTGATCACCGGCATATTGAATATCGCATCTCGTTCTGGGATTTTAC
CTGTTACATAGGCTTTCATCCCGTCTCGCCTTTCCTCCTCCTCCACCTCC
TCGTCCTCTACATCCGCCTCTCCCTTCTCCTTCCTTCGTTTCCGCCCCAG
CCTGAGCATGTCGGCAGCTCAAGCTTCCCCCAAGGTGCTGTGCTATGGCG
AGGCCCTTGTCGATCGCTTGGGCCCGCTGGGAGGAGATCCTGCGACTGAC
TTGCCCGTGGACGATCGCTTGGGTGGCGCGCCTGCGAACGTGGCTTGTGG
ATTATCGCGGCTGGGGACGCCGGCGGCCTTCCTAGGTCGGTTGGGCGAGG
ACGAAATTGGCCGGCAGTTCAAGAAGGTCTTCCAGCAACGACATGTCAAC
ACCCAAGCCTTGCAGTGGGACCCCTCCCGGCCATCGCGCATCGTCCTTGT
CAAGCGCGACGTCTGCGGAGACAGAGAGTTCGGTGGCTTTACCGGTGACG
CTGCCAACTCAGGGTTCGCCGACCAGGGCGTGGACCCCCTCGCCCTCCTT
CCCGCCCTCCCCTCTTTCCTCCCGGCAGCGGAATGGCTGTTGGTGGGCAC
CTTGCCCTTGGGAAGCGCCTTGTCAGCCGAGGCCTTGCGGGCCGCGGTCA
GGTGGGCGGGACAAGCAGGCGTGCGCTTGGCTCTAGACATTAACTGGCGC
CCCACGTTCTGGGAGGGTCACAGTCAACCCTCAGAGGGACCCTCGGCGAT
GGCCCAAGCCGCCATCCGGCCGCTCTTGCAACAAGCCGACCTGATTAAGT
TCGCTAAGGAAGAGGCAGAATGGCTCTTTGACGGGGAGACCGATCCCAGC
AGCATAAGTGAGGCCCTGCCGCACAAGCCGGCGGTGCTGGTGACGGACGG
AGGGGGGATGCTCAGGTGGACCATGGGTGGGGGAGGGAGGGAAAGAGGGA
GGGTGGGGGAGATGGAGGCCTTTCGGGTGAATGCGGTAGACACCACGGGG
GCAGGCGATGCCTTCGTGGCGGGATTGTTGCATGGCTTGGTCGCAGACCC
GAGTGTGTTGGAGGGAGGGGGAGGGGGAGGGAAGGTAGAGGAGATGGTCC
GGTTTGCGTGTGGGTGTGGGGCGCTGGTGTGCCAGGGGGCGGGGGCAATT
GACCCTCAGCCGACGGTGGAGGAGGTGCAGGCGTTCTTGGTGGAGGCGGG
CCGGGAGCAATGAGGAGGATGGACGAGGGGGAGGGAAAGGGGAAAGAGAG
GAGATAGTGAGTGCCACGAAATGTTTATTGTGTGGCGTGTGTGTCCTAAC
CCT back to topprotein sequence of NO06G04400.2 >NO06G04400.2-protein ID=NO06G04400.2-protein|Name=NO06G04400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MSAAQASPKVLCYGEALVDRLGPLGGDPATDLPVDDRLGGAPANVACGLS
RLGTPAAFLGRLGEDEIGRQFKKVFQQRHVNTQALQWDPSRPSRIVLVKR
DVCGDREFGGFTGDAANSGFADQGVDPLALLPALPSFLPAAEWLLVGTLP
LGSALSAEALRAAVRWAGQAGVRLALDINWRPTFWEGHSQPSEGPSAMAQ
AAIRPLLQQADLIKFAKEEAEWLFDGETDPSSISEALPHKPAVLVTDGGG
MLRWTMGGGGRERGRVGEMEAFRVNAVDTTGAGDAFVAGLLHGLVADPSV
LEGGGGGGKVEEMVRFACGCGALVCQGAGAIDPQPTVEEVQAFLVEAGRE
Q* back to topmRNA from alignment at chr6:1231484..1233587- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04400.2 ID=NO06G04400.2|Name=NO06G04400.2|organism=Nannochloropsis oceanica|type=mRNA|length=2104bp|location=Sequence derived from alignment at chr6:1231484..1233587- (Nannochloropsis oceanica)
AAAAGACACAGCGTGTATGCCAAGCTGCACGATGACGGTAACGACAACGA
TACCGCTAAGAAGACGGCAAAACGGGACGTTGACGTCTCTAAATCGCGGG
CAACAACCAACGGCCCTCTCAAAGCTACTGCTGCTCACCCTCCTCCTCCT
GCCTTCGCTTGAGGTAACGTAATTCCCCTGTCTACGTGTCCGCTCTCTCG
CCGCCTGATCACCGGCATATTGAATATCGCATCTCGTTCTGGGATTTTAC
CTGTTACATAGGCTTTCATCCCGTCTCGCCTTTCCTCCTCCTCCACCTCC
TCGTCCTCTACATCCGCCTCTCCCTTCTCCTTCCTTCGTTTCCGCCCCAG
CCTGAGCATGTCGGCAGCTCAAGCTTCCCCCAAGGTGCTGTGCTATGGCG
AGGCCCTTGTCGATCGCTTGGGCCCGCTGGGAGGAGATCCTGCGACTGAC
TTGCCCGTGGTACGTCCCTTTCTATTTCACTTTGCGCTTCCCTCCCTCCT
CTCCTTCCCCCTCACCCGCCCTATCAGTCTCCAAACCCTGCGATCATTTG
CAATTTGAATCCCACGGCCTTTCCCCCCCTTTTATTTTTGTCTATAGGAC
GATCGCTTGGGTGGCGCGCCTGCGAACGTGGCTTGTGGATTATCGCGGCT
GGGGACGCCGGCGGCCTTCCTAGGTCGGTTGGGCGAGGACGAAATTGGCC
GGCAGTTCAAGAAGGTCTTCCAGGTGCGGAGAGAGGGAACGAGGGATTGT
GGAAAGGAGGGAAGGAGGGAGAAACGAAGTGGGAGCAGTCTTCCTGGAGA
ACGCGGGCCCGGTTGTCTCTCTTCGGCAACACGTGCATCCATGAAGCCAC
CCTCCTTCCCTCCCTCCTTCCTTCCCTCCTTCCCTCCCTTCCTTCCAGCA
ACGACATGTCAACACCCAAGCCTTGCAGTGGGACCCCTCCCGGCCATCGC
GCATCGTCCTTGTCAAGCGCGACGTCTGCGGAGACAGAGAGTTCGGTGGC
TTTACCGGTGACGCTGCCAACTCAGGGTTCGCCGACCAGGGCGTGGACCC
CCTCGCCCTCCTTCCCGCCCTCCCCTCTTTCCTCCCGGCAGCGGAATGGC
TGTTGGTGGGCACCTTGCCCTTGGGAAGCGCCTTGTCAGCCGAGGCCTTG
CGGGTAGGTCAGGGTGTGGAGGAGGTAGCAGGAACACTCCCAGGGAGAGC
GAGGACCGTGGCTAGACGCACAGATCACTAACCTTCCCTCCCTCCGTGCC
TCCCTCCCTTCTTCCCCCAGGCCGCGGTCAGGTGGGCGGGACAAGCAGGC
GTGCGCTTGGCTCTAGACATTAACTGGCGCCCCACGTTCTGGGAGGGTCA
CAGTCAACCCTCAGAGGGACCCTCGGCGATGGTAGGGAGGGAGGGATGGG
CGGAGGGAGGGAGGGGCGGAGGACAATCTGGATGGGGAGTGGAAATAGGG
GCTTTCTCGTGACACTGCTAGTATGTGTACACCCTTAACGCCCCCTCTCC
ACCCCCACCTTCCCTTTCTCGTTCCTTCCCTCCTCCCTCACCTTCTCCTT
AGGCCCAAGCCGCCATCCGGCCGCTCTTGCAACAAGCCGACCTGATTAAG
TTCGCTAAGGAAGAGGCAGAATGGCTCTTTGACGGGGAGACCGATCCCAG
CAGCATAAGTGAGGCCCTGCCGCACAAGCCGGCGGTGCTGGTGACGGACG
GAGGGGGGATGCTCAGGTGGACCATGGGTGGGGGAGGGAGGGAAAGAGGG
AGGGTGGGGGAGATGGAGGCCTTTCGGGTGAATGCGGTAGACACCACGGG
GGCAGGCGATGCCTTCGTGGCGGGATTGTTGCATGGCTTGGTCGCAGACC
CGAGTGTGTTGGAGGGAGGGGGAGGGGGAGGGAAGGTAGAGGAGATGGTC
CGGTTTGCGTGTGGGTGTGGGGCGCTGGTGTGCCAGGGGGCGGGGGCAAT
TGACCCTCAGCCGACGGTGGAGGAGGTGCAGGCGTTCTTGGTGGAGGCGG
GCCGGGAGCAATGAGGAGGATGGACGAGGGGGAGGGAAAGGGGAAAGAGA
GGAGATAGTGAGTGCCACGAAATGTTTATTGTGTGGCGTGTGTGTCCTAA
CCCT back to topCoding sequence (CDS) from alignment at chr6:1231484..1233587- >NO06G04400.2 ID=NO06G04400.2|Name=NO06G04400.2|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr6:1231484..1233587- (Nannochloropsis oceanica)
ATGTCGGCAGCTCAAGCTTCCCCCAAGGTGCTGTGCTATGGCGAGGCCCT
TGTCGATCGCTTGGGCCCGCTGGGAGGAGATCCTGCGACTGACTTGCCCG
TGGACGATCGCTTGGGTGGCGCGCCTGCGAACGTGGCTTGTGGATTATCG
CGGCTGGGGACGCCGGCGGCCTTCCTAGGTCGGTTGGGCGAGGACGAAAT
TGGCCGGCAGTTCAAGAAGGTCTTCCAGCAACGACATGTCAACACCCAAG
CCTTGCAGTGGGACCCCTCCCGGCCATCGCGCATCGTCCTTGTCAAGCGC
GACGTCTGCGGAGACAGAGAGTTCGGTGGCTTTACCGGTGACGCTGCCAA
CTCAGGGTTCGCCGACCAGGGCGTGGACCCCCTCGCCCTCCTTCCCGCCC
TCCCCTCTTTCCTCCCGGCAGCGGAATGGCTGTTGGTGGGCACCTTGCCC
TTGGGAAGCGCCTTGTCAGCCGAGGCCTTGCGGGCCGCGGTCAGGTGGGC
GGGACAAGCAGGCGTGCGCTTGGCTCTAGACATTAACTGGCGCCCCACGT
TCTGGGAGGGTCACAGTCAACCCTCAGAGGGACCCTCGGCGATGGCCCAA
GCCGCCATCCGGCCGCTCTTGCAACAAGCCGACCTGATTAAGTTCGCTAA
GGAAGAGGCAGAATGGCTCTTTGACGGGGAGACCGATCCCAGCAGCATAA
GTGAGGCCCTGCCGCACAAGCCGGCGGTGCTGGTGACGGACGGAGGGGGG
ATGCTCAGGTGGACCATGGGTGGGGGAGGGAGGGAAAGAGGGAGGGTGGG
GGAGATGGAGGCCTTTCGGGTGAATGCGGTAGACACCACGGGGGCAGGCG
ATGCCTTCGTGGCGGGATTGTTGCATGGCTTGGTCGCAGACCCGAGTGTG
TTGGAGGGAGGGGGAGGGGGAGGGAAGGTAGAGGAGATGGTCCGGTTTGC
GTGTGGGTGTGGGGCGCTGGTGTGCCAGGGGGCGGGGGCAATTGACCCTC
AGCCGACGGTGGAGGAGGTGCAGGCGTTCTTGGTGGAGGCGGGCCGGGAG
CAATGA back to top
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