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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1158207..1159398 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04150.1 vs.
Match: CEM01544.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 157.5 bits (397), Expect = 8.000e-35 Identity = 103/253 (40.71%), Postives = 150/253 (59.29%), Query Frame = 0
Query: 112 RRRRRSSSNSKPPHGSNRDSYSGRSTSATAADTNDMRGQGLRKALSALTGLRGDKPSARKGQAGTSRKKSSPSSPSIAPKGSVVSLSPRGATTRLNKMLAHAGVASRRSAEEMIAQGKVSVNGVIVLDVGCKVDPSVDSITVEGKAAPVALRKASEVVWMKVNKPKGTLTSITDSKGRKCLGDLVESAVEKRLLPVGRLDRDTAGLLLMTNDNEAINLLTHPSFGHVKLYKAVVEKGMPSVHVLHQLKRGLVL 365
R++RR S R + + A + D + + + + AL R A K + +S + S ++PS+ SL R A RL K+++ AG+ASRR+AEEMI G+V VNGV+V D+G KVD D +TV+G+ +A+R E+ W+ V+KPKG + S+ D + RK + DLV A RLLPVGRLDRD++GLLL+TNDN+ ++ LTHPS+GH K Y V+ G P VL++L G++L
Sbjct: 56 RKKRRHRKGPAISPSSPRYLLTQQGRRAMSKDRSLLVKSEIHRVRRALREQR-----AAKLDSSSSLQDPSQNAPSLP------SLEERSAPERLQKVISRAGIASRRAAEEMILDGRVRVNGVVVTDLGVKVDALGDRVTVDGRK--IAVRPPEEIKWIAVHKPKGYICSMNDDRDRKTVKDLVPMAERLRLLPVGRLDRDSSGLLLLTNDNKWLHPLTHPSYGHQKRYIVTVDNGTPKYDVLNELAEGVLL 295
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04150.1 ID=NO06G04150.1|Name=NO06G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp AACCAACAAATACACACCATGCCTCCCCTTATGCAAGCACAGGTGTCATC ATGGTGCCAAGAAGAAGGTCTCGAGCAATAGGTGCACCAGTACGACGTAT GGTTGGGGTCCTGACACTCTTATTTGCCGGCCACAGCTTATTCGTCACCA CCCATGCCCGTGCTGCATTTCTGCTGCCCTCCGCCGCCTCGGGTCGCTGC CCTTCATCACGCTCCCACCCAGACCCTGCGACAGGAAGGAGGAGACACAA TGTCCCACATATGGCACGTACCAGCGGTAGCAGCGGAGGTGGCGGTGGTG GTGGCCGGAGGGATGGAGGAGGCAATTACAGAGGAGCCAACCGGGATGCG CCACGCCGACGCTTTAATGACGACGACGACGAACGGCGCCGCCGCCGCAG CAGCAGCAATAGCAAGCCCCCACATGGCAGCAATAGAGACAGTTACAGTG GACGCAGTACATCAGCTACAGCAGCCGACACAAACGACATGCGTGGACAG GGACTACGCAAGGCTTTGTCGGCACTAACGGGCCTCCGTGGTGACAAACC CTCCGCTCGAAAGGGCCAAGCAGGCACATCCAGAAAGAAATCGTCTCCCT CCTCCCCATCCATAGCACCGAAAGGTAGCGTCGTGTCCCTCTCTCCCCGT GGGGCCACTACGCGGCTGAATAAGATGCTGGCGCATGCCGGAGTCGCCTC TCGACGAAGCGCAGAGGAAATGATTGCTCAAGGGAAGGTCAGCGTGAATG GCGTGATTGTGTTGGACGTGGGTTGCAAGGTTGATCCATCTGTGGACTCC ATAACGGTGGAGGGGAAGGCTGCGCCGGTAGCGTTGCGGAAGGCGAGTGA GGTGGTGTGGATGAAGGTGAACAAGCCGAAGGGCACTCTGACGTCAATCA CGGACAGCAAAGGCCGTAAATGTCTGGGGGATCTGGTGGAAAGCGCGGTG GAAAAGCGGCTTTTGCCTGTTGGACGGTTGGACAGGGACACTGCGGGATT GTTGTTGATGACGAATGACAACGAGGCAATCAATCTGTTGACGCACCCGT CCTTTGGCCACGTTAAGTTGTACAAGGCTGTGGTGGAGAAGGGCATGCCG TCTGTGCATGTTTTGCACCAGCTTAAGAGGGGCTTGGTGCTCTTGGAGGA GGAGAACGGGGGTAAAGAGGAGCTGGAGGGGGGGTAAGGGGA back to topprotein sequence of NO06G04150.1 >NO06G04150.1-protein ID=NO06G04150.1-protein|Name=NO06G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp MVPRRRSRAIGAPVRRMVGVLTLLFAGHSLFVTTHARAAFLLPSAASGRC PSSRSHPDPATGRRRHNVPHMARTSGSSGGGGGGGRRDGGGNYRGANRDA PRRRFNDDDDERRRRRSSSNSKPPHGSNRDSYSGRSTSATAADTNDMRGQ GLRKALSALTGLRGDKPSARKGQAGTSRKKSSPSSPSIAPKGSVVSLSPR GATTRLNKMLAHAGVASRRSAEEMIAQGKVSVNGVIVLDVGCKVDPSVDS ITVEGKAAPVALRKASEVVWMKVNKPKGTLTSITDSKGRKCLGDLVESAV EKRLLPVGRLDRDTAGLLLMTNDNEAINLLTHPSFGHVKLYKAVVEKGMP SVHVLHQLKRGLVLLEEENGGKEELEGG* back to topmRNA from alignment at chr6:1158207..1159398- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04150.1 ID=NO06G04150.1|Name=NO06G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp|location=Sequence derived from alignment at chr6:1158207..1159398- (Nannochloropsis oceanica) AACCAACAAATACACACCATGCCTCCCCTTATGCAAGCACAGGTGTCATC
ATGGTGCCAAGAAGAAGGTCTCGAGCAATAGGTGCACCAGTACGACGTAT
GGTTGGGGTCCTGACACTCTTATTTGCCGGCCACAGCTTATTCGTCACCA
CCCATGCCCGTGCTGCATTTCTGCTGCCCTCCGCCGCCTCGGGTCGCTGC
CCTTCATCACGCTCCCACCCAGACCCTGCGACAGGAAGGAGGAGACACAA
TGTCCCACATATGGCACGTACCAGCGGTAGCAGCGGAGGTGGCGGTGGTG
GTGGCCGGAGGGATGGAGGAGGCAATTACAGAGGAGCCAACCGGGATGCG
CCACGCCGACGCTTTAATGACGACGACGACGAACGGCGCCGCCGCCGCAG
CAGCAGCAATAGCAAGCCCCCACATGGCAGCAATAGAGACAGTTACAGTG
GACGCAGTACATCAGCTACAGCAGCCGACACAAACGACATGCGTGGACAG
GGACTACGCAAGGCTTTGTCGGCACTAACGGGCCTCCGTGGTGACAAACC
CTCCGCTCGAAAGGGCCAAGCAGGCACATCCAGAAAGAAATCGTCTCCCT
CCTCCCCATCCATAGCACCGAAAGGTAGCGTCGTGTCCCTCTCTCCCCGT
GGGGCCACTACGCGGCTGAATAAGATGCTGGCGCATGCCGGAGTCGCCTC
TCGACGAAGCGCAGAGGAAATGATTGCTCAAGGGAAGGTCAGCGTGAATG
GCGTGATTGTGTTGGACGTGGGTTGCAAGGTTGATCCATCTGTGGACTCC
ATAACGGTGGAGGGGAAGGCTGCGCCGGTAGCGTTGCGGAAGGCGAGTGA
GGTGGTGTGGATGAAGGTGAACAAGCCGAAGGGCACTCTGACGTCAATCA
CGGACAGCAAAGGCCGTAAATGTCTGGGGGATCTGGTGGAAAGCGCGGTG
GAAAAGCGGCTTTTGCCTGTTGGACGGTTGGACAGGGACACTGCGGGATT
GTTGTTGATGACGAATGACAACGAGGCAATCAATCTGTTGACGCACCCGT
CCTTTGGCCACGTTAAGTTGTACAAGGCTGTGGTGGAGAAGGGCATGCCG
TCTGTGCATGTTTTGCACCAGCTTAAGAGGGGCTTGGTGCTCTTGGAGGA
GGAGAACGGGGGTAAAGAGGAGCTGGAGGGGGGGTAAGGGGA back to topCoding sequence (CDS) from alignment at chr6:1158207..1159398- >NO06G04150.1 ID=NO06G04150.1|Name=NO06G04150.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr6:1158207..1159398- (Nannochloropsis oceanica) ATGGTGCCAAGAAGAAGGTCTCGAGCAATAGGTGCACCAGTACGACGTAT GGTTGGGGTCCTGACACTCTTATTTGCCGGCCACAGCTTATTCGTCACCA CCCATGCCCGTGCTGCATTTCTGCTGCCCTCCGCCGCCTCGGGTCGCTGC CCTTCATCACGCTCCCACCCAGACCCTGCGACAGGAAGGAGGAGACACAA TGTCCCACATATGGCACGTACCAGCGGTAGCAGCGGAGGTGGCGGTGGTG GTGGCCGGAGGGATGGAGGAGGCAATTACAGAGGAGCCAACCGGGATGCG CCACGCCGACGCTTTAATGACGACGACGACGAACGGCGCCGCCGCCGCAG CAGCAGCAATAGCAAGCCCCCACATGGCAGCAATAGAGACAGTTACAGTG GACGCAGTACATCAGCTACAGCAGCCGACACAAACGACATGCGTGGACAG GGACTACGCAAGGCTTTGTCGGCACTAACGGGCCTCCGTGGTGACAAACC CTCCGCTCGAAAGGGCCAAGCAGGCACATCCAGAAAGAAATCGTCTCCCT CCTCCCCATCCATAGCACCGAAAGGTAGCGTCGTGTCCCTCTCTCCCCGT GGGGCCACTACGCGGCTGAATAAGATGCTGGCGCATGCCGGAGTCGCCTC TCGACGAAGCGCAGAGGAAATGATTGCTCAAGGGAAGGTCAGCGTGAATG GCGTGATTGTGTTGGACGTGGGTTGCAAGGTTGATCCATCTGTGGACTCC ATAACGGTGGAGGGGAAGGCTGCGCCGGTAGCGTTGCGGAAGGCGAGTGA GGTGGTGTGGATGAAGGTGAACAAGCCGAAGGGCACTCTGACGTCAATCA CGGACAGCAAAGGCCGTAAATGTCTGGGGGATCTGGTGGAAAGCGCGGTG GAAAAGCGGCTTTTGCCTGTTGGACGGTTGGACAGGGACACTGCGGGATT GTTGTTGATGACGAATGACAACGAGGCAATCAATCTGTTGACGCACCCGT CCTTTGGCCACGTTAAGTTGTACAAGGCTGTGGTGGAGAAGGGCATGCCG TCTGTGCATGTTTTGCACCAGCTTAAGAGGGGCTTGGTGCTCTTGGAGGA GGAGAACGGGGGTAAAGAGGAGCTGGAGGGGGGGTAA back to top
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