|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1131479..1132915 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04060.1 vs.
Match: EWM26397.1 (hypothetical protein Naga_100365g5 [Nannochloropsis gaditana]) HSP 1 Score: 423.7 bits (1088), Expect = 7.600e-115 Identity = 222/384 (57.81%), Postives = 270/384 (70.31%), Query Frame = 0
Query: 13 LFLLAFLALLPTPSSSSAWDPHPWPSTPPYVEGWYVRLTSLDTSDTLGVIFGASLLPLSPPSSLPPCYVAILHGDGKTNKTTVYEGNPPLESVEIRGHYGRNITKSPDWRTEPHFTWRARTPSHHNSDNLTADTEAIKQEINNMMLSSSSSSSSLSSSSSSPFTTMTAVQEGPLLFLHITLPTARFLAQIEVSPWAYDGSPRPHSWTDIIDEVPLHWYIHTLSSRLLYARLELHQAEGAREGGK------------VMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPS------------SVAFVLSYGQVSPGIFTHFAHFRDEELGIAWDFKPVNSVLVAEEVDGCEGRARFVLEGWG--EEEGGREEEE 371
L L FL LLP PSS SAWDPHPWPSTPPYVEGWYVRL+ L+T D++ +IFGASLLP +PP SLPP Y+AILHGD TNKT VYE PPLE+VEIR G+ +T++ DW+ P FTWR A+ A +Q S S++SS S +SS +M A+Q LFL +TLPTA F AQI++ PW YDG PRPHSWTD++D VPLHWYIH+LSSR++YARLEL + EG +EGG+ ++ES G VHLEKNWG+RFPD+WLW+QGV + P S SSS PS S+AFV SYGQV+PG+FTHFAHFRD++LG+AWDFKP +SVLV E V+GC+GRARFVLEGWG E+EGG + E
Sbjct: 35 LATLHFLFLLP-PSSPSAWDPHPWPSTPPYVEGWYVRLSGLETGDSIALIFGASLLPPAPPPSLPPVYLAILHGDVLTNKTVVYESTPPLEAVEIRQKNGQPVTEAVDWKAPPGFTWRVIDE---------AEDGAARQAPQG----SKSTTSSFSPEASS---SMNAIQRARHLFLRVTLPTAAFWAQIDIPPWKYDGPPRPHSWTDVVDAVPLHWYIHSLSSRVVYARLELKE-EGRQEGGRAVEGKGGGRGKRIIESHRGQVHLEKNWGRRFPDAWLWSQGVASLPLSDPSSSPSPSTSPSTSSTRNASSIAFVFSYGQVTPGVFTHFAHFRDQDLGLAWDFKPSSSVLVEESVEGCQGRARFVLEGWGAEEQEGGGGDGE 400
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04060.1 ID=NO06G04060.1|Name=NO06G04060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp ATGCACTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCTCCTCGC CTTTCTCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGGACCCCC ACCCCTGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTCCGTCTC ACTAGCTTGGATACGTCCGACACTCTAGGGGTTATCTTCGGTGCCTCCTT GCTGCCCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCGCGATCC TCCACGGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGGAACCCG CCGTTGGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACATTACCAA GTCACCGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCCGCACCC CTTCTCATCACAACTCCGACAATCTTACCGCCGACACCGAGGCCATCAAG CAAGAAATCAATAATATGATGCTTTCCTCCTCGTCGTCGTCCTCCTCCCT CTCCTCCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCCAGGAGG GCCCCTTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTTCTTGCC CAAATCGAGGTTTCTCCCTGGGCGTACGACGGTTCTCCACGTCCTCACAG CTGGACGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCCACACCC TCTCCTCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCAGAGGGC GCGAGGGAGGGAGGGAAGGTGATGGAGAGTCGGCACGGGCTTGTGCATCT CGAGAAGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGGCGCAGG GCGTGACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTCCCTTCC TCGGTGGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAATATTTAC TCATTTCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGGACTTCA AGCCGGTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGTGAAGGG AGGGCGAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGGGAGGGA GGAGGAGGAGAGGAAGAGGATGATCCGTGGTGCTGCCCCGGGTGCAATGG CTGAGAAAAGGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGAAG GGAGGGAGTGGCCCTGGCAAGCTTGTTGCGGGTGCGCTTTTCCCTCCCTC TCCTTTGACCCCGCGACGTCGGCGGCTCGTGCTGGAATTAACGTTTCCGT TAGGCAGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTTGAAAAA CTGTGCCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTCAGTGAT GAAGGGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGA back to topprotein sequence of NO06G04060.1 >NO06G04060.1-protein ID=NO06G04060.1-protein|Name=NO06G04060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp MHWQSHPILFPFLFLLAFLALLPTPSSSSAWDPHPWPSTPPYVEGWYVRL TSLDTSDTLGVIFGASLLPLSPPSSLPPCYVAILHGDGKTNKTTVYEGNP PLESVEIRGHYGRNITKSPDWRTEPHFTWRARTPSHHNSDNLTADTEAIK QEINNMMLSSSSSSSSLSSSSSSPFTTMTAVQEGPLLFLHITLPTARFLA QIEVSPWAYDGSPRPHSWTDIIDEVPLHWYIHTLSSRLLYARLELHQAEG AREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPS SVAFVLSYGQVSPGIFTHFAHFRDEELGIAWDFKPVNSVLVAEEVDGCEG RARFVLEGWGEEEGGREEEERKRMIRGAAPGAMAEKREEEEEEKEEEEKK GGSGPGKLVAGALFPPSPLTPRRRRLVLELTFPLGSAACLSGPTGKGFEK LCQESFQGEARLIASVMKGGGGKRWRGR* back to topmRNA from alignment at chr6:1131479..1132915+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04060.1 ID=NO06G04060.1|Name=NO06G04060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp|location=Sequence derived from alignment at chr6:1131479..1132915+ (Nannochloropsis oceanica) ATGCACTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCTCCTCGC
CTTTCTCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGGACCCCC
ACCCCTGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTCCGTCTC
ACTAGCTTGGATACGTCCGACACTCTAGGGGTTATCTTCGGTGCCTCCTT
GCTGCCCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCGCGATCC
TCCACGGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGGAACCCG
CCGTTGGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACATTACCAA
GTCACCGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCCGCACCC
CTTCTCATCACAACTCCGACAATCTTACCGCCGACACCGAGGCCATCAAG
CAAGAAATCAATAATATGATGCTTTCCTCCTCGTCGTCGTCCTCCTCCCT
CTCCTCCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCCAGGAGG
GCCCCTTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTTCTTGCC
CAAATCGAGGTTTCTCCCTGGGCGTACGACGGTTCTCCACGTCCTCACAG
CTGGACGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCCACACCC
TCTCCTCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCAGAGGGC
GCGAGGGAGGGAGGGAAGGTGATGGAGAGTCGGCACGGGCTTGTGCATCT
CGAGAAGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGGCGCAGG
GCGTGACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTCCCTTCC
TCGGTGGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAATATTTAC
TCATTTCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGGACTTCA
AGCCGGTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGTGAAGGG
AGGGCGAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGGGAGGGA
GGAGGAGGAGAGGAAGAGGATGATCCGTGGTGCTGCCCCGGGTGCAATGG
CTGAGAAAAGGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGAAG
GGAGGGAGTGGCCCTGGCAAGCTTGTTGCGGGTGCGCTTTTCCCTCCCTC
TCCTTTGACCCCGCGACGTCGGCGGCTCGTGCTGGAATTAACGTTTCCGT
TAGGCAGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTTGAAAAA
CTGTGCCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTCAGTGAT
GAAGGGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGA back to topCoding sequence (CDS) from alignment at chr6:1131479..1132915+ >NO06G04060.1 ID=NO06G04060.1|Name=NO06G04060.1|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr6:1131479..1132915+ (Nannochloropsis oceanica) ATGCACTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCTCCTCGC CTTTCTCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGGACCCCC ACCCCTGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTCCGTCTC ACTAGCTTGGATACGTCCGACACTCTAGGGGTTATCTTCGGTGCCTCCTT GCTGCCCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCGCGATCC TCCACGGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGGAACCCG CCGTTGGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACATTACCAA GTCACCGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCCGCACCC CTTCTCATCACAACTCCGACAATCTTACCGCCGACACCGAGGCCATCAAG CAAGAAATCAATAATATGATGCTTTCCTCCTCGTCGTCGTCCTCCTCCCT CTCCTCCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCCAGGAGG GCCCCTTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTTCTTGCC CAAATCGAGGTTTCTCCCTGGGCGTACGACGGTTCTCCACGTCCTCACAG CTGGACGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCCACACCC TCTCCTCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCAGAGGGC GCGAGGGAGGGAGGGAAGGTGATGGAGAGTCGGCACGGGCTTGTGCATCT CGAGAAGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGGCGCAGG GCGTGACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTCCCTTCC TCGGTGGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAATATTTAC TCATTTCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGGACTTCA AGCCGGTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGTGAAGGG AGGGCGAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGGGAGGGA GGAGGAGGAGAGGAAGAGGATGATCCGTGGTGCTGCCCCGGGTGCAATGG CTGAGAAAAGGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGAAG GGAGGGAGTGGCCCTGGCAAGCTTGTTGCGGGTGCGCTTTTCCCTCCCTC TCCTTTGACCCCGCGACGTCGGCGGCTCGTGCTGGAATTAACGTTTCCGT TAGGCAGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTTGAAAAA CTGTGCCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTCAGTGAT GAAGGGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGA back to top
|