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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:830105..831445 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02890.1 vs.
Match: EWM26315.1 (hypothetical protein Naga_100093g12 [Nannochloropsis gaditana]) HSP 1 Score: 333.2 bits (853), Expect = 1.300e-87 Identity = 224/448 (50.00%), Postives = 292/448 (65.18%), Query Frame = 0
Query: 25 LADTGRSSISTLDVTPT----ASSHPTSTTSALPPLLDQLSMRQPPPSGTSTNTKM-PVTTRIRPLSRSSLESTMDELSEVSGGVSGEDTSK-LSEPENSLRRPFWQLNLLRATITTGGFLTPRLHVPRLVWEQWGAKLNGLTTKATAFEAVLSLLVDRILPLELL----------SSINDPSRKT-----QNEDGEAARRDLAKV---LRIFEEVRAEFDFLQNSLARLFLFIKEVPPTATSSSTSNSSSNGSIAIALASSSSS----SAASSFYLGSGGGMQQVRGFMTSFRNKIQRSAVSAMTAVERIGVALPAKINDEDLLSYASLVSEMCHKAQRLDEWFVSLDCRRRELQEALRREASPSASSTSSSSASSFSSSSLSGKEATQALLHQVEGILVELLHCARFLQEVVIELLLRDVESLVDSYLRKARKVFTRMVWELEEQE 445
+ ++G +S + P+ A + PT++ S++P L QL P S ++ + P T R LSR SLESTMDEL+EVS G+ + + L EPENSLRRPFWQL L++ TIT+GGFL P+L+VPRL WEQ+GA++NGL+TK TAFEAVLSLL+ LP++LL +++ P++ + D + R DL K L+ F E+RAEFD +QNSLAR F F++ V + + G + SSS A S + +GGGMQ +RG M SF KI + AVSAMTA ER+GV L AKI+D +L SY++LV E+C KAQRLD WF+ LD RR L++ L R S S SS + +ASSFSSSSLS E +AL H VE LVELLHCARFLQ+VV+EL+LRDVESL+DSYLR+ARKVF+RMVWELE+ E
Sbjct: 4 MEESGSASSYFAETAPSPERPACTFPTTSPSSVPRLCSQLGTMDFPVSVSNLCVEEGPARTASRRLSRQSLESTMDELNEVSKGIPDAEVKECLPEPENSLRRPFWQLLLIQRTITSGGFLNPKLYVPRLAWEQYGARVNGLSTKMTAFEAVLSLLLGCPLPVQLLLNAPGSGVGKNNMPAPAKALGTLGLEEVDDQRVREDLLKAQKALQAFRELRAEFDVVQNSLARSFPFLRPVASEDSGARREGIGRRGRSSSRPGDSSSPVPSFGDAFSLAMSAGGGMQHIRGLMASFGRKIHKGAVSAMTAYERMGV-LAAKISDAELQSYSALVCEVCEKAQRLDGWFLYLDDSRRMLEKFLSRHVS-SCSSPQAPAASSFSSSSLSLMETLRALQHCVENSLVELLHCARFLQDVVVELVLRDVESLLDSYLRRARKVFSRMVWELEDSE 449
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02890.1 ID=NO06G02890.1|Name=NO06G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp ATGCCGGACATTTGTCCGTCGCCCGCGCTTAAGAGCAGCAAAGACGACTC GGAGATGACACATGAGTCCCGGCTTGCCGACACAGGCAGGAGCAGCATTT CTACCCTCGACGTGACACCCACAGCATCATCGCATCCCACCTCAACTACA TCAGCCCTTCCTCCGCTCTTAGACCAGTTAAGTATGCGCCAGCCGCCCCC ATCGGGCACCTCGACAAATACCAAGATGCCAGTGACAACACGAATTAGGC CTTTGTCACGAAGCTCCCTTGAAAGCACCATGGACGAACTAAGCGAAGTG AGTGGAGGCGTCTCAGGCGAAGATACGAGTAAATTATCCGAGCCCGAAAA CTCGTTACGACGGCCCTTCTGGCAGTTGAATCTCCTTCGAGCCACCATCA CGACGGGAGGATTTCTCACACCGCGCTTACATGTACCTCGCTTGGTCTGG GAACAATGGGGCGCCAAGTTGAACGGTTTGACCACCAAAGCCACAGCTTT TGAGGCTGTCTTAAGTCTACTTGTGGACCGCATTTTGCCCTTGGAGCTCC TATCGAGCATCAATGACCCCAGCAGGAAAACCCAAAATGAGGATGGCGAG GCCGCAAGGAGGGACCTAGCTAAGGTACTGCGGATTTTTGAGGAAGTGCG CGCCGAGTTTGACTTTCTGCAAAACTCTCTCGCGCGGCTCTTTCTCTTTA TCAAAGAAGTCCCCCCTACCGCCACCAGCAGCAGCACCAGTAACAGCAGC AGTAACGGCAGCATAGCAATAGCGCTTGCGTCGTCATCCTCCTCCTCCGC CGCCTCTTCATTTTATTTGGGAAGTGGTGGGGGCATGCAGCAAGTGCGGG GATTCATGACTTCTTTTCGCAATAAGATTCAAAGAAGCGCAGTCTCTGCG ATGACTGCGGTTGAACGCATAGGGGTGGCCTTGCCTGCCAAAATAAATGA TGAAGACCTCTTATCCTACGCTAGCTTGGTCTCTGAGATGTGTCATAAGG CCCAGAGGCTCGACGAATGGTTTGTTTCCCTGGATTGTCGGAGAAGAGAG TTACAGGAAGCATTGCGAAGAGAGGCATCTCCGTCAGCTTCATCTACTTC TTCCTCTTCCGCGTCCTCCTTTTCTTCCTCATCTTTATCAGGGAAAGAAG CAACCCAAGCGCTGTTGCACCAAGTGGAGGGCATTCTGGTGGAATTGCTG CATTGTGCCAGATTTCTGCAGGAGGTGGTGATCGAGCTTCTTCTACGAGA CGTAGAATCGTTGGTGGACTCGTATTTGCGCAAGGCCCGCAAAGTGTTCA CGAGAATGGTTTGGGAGTTGGAGGAGCAGGAGAATAGCTAG back to topprotein sequence of NO06G02890.1 >NO06G02890.1-protein ID=NO06G02890.1-protein|Name=NO06G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp MPDICPSPALKSSKDDSEMTHESRLADTGRSSISTLDVTPTASSHPTSTT SALPPLLDQLSMRQPPPSGTSTNTKMPVTTRIRPLSRSSLESTMDELSEV SGGVSGEDTSKLSEPENSLRRPFWQLNLLRATITTGGFLTPRLHVPRLVW EQWGAKLNGLTTKATAFEAVLSLLVDRILPLELLSSINDPSRKTQNEDGE AARRDLAKVLRIFEEVRAEFDFLQNSLARLFLFIKEVPPTATSSSTSNSS SNGSIAIALASSSSSSAASSFYLGSGGGMQQVRGFMTSFRNKIQRSAVSA MTAVERIGVALPAKINDEDLLSYASLVSEMCHKAQRLDEWFVSLDCRRRE LQEALRREASPSASSTSSSSASSFSSSSLSGKEATQALLHQVEGILVELL HCARFLQEVVIELLLRDVESLVDSYLRKARKVFTRMVWELEEQENS* back to topmRNA from alignment at chr6:830105..831445- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02890.1 ID=NO06G02890.1|Name=NO06G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr6:830105..831445- (Nannochloropsis oceanica) ATGCCGGACATTTGTCCGTCGCCCGCGCTTAAGAGCAGCAAAGACGACTC
GGAGATGACACATGAGTCCCGGCTTGCCGACACAGGCAGGAGCAGCATTT
CTACCCTCGACGTGACACCCACAGCATCATCGCATCCCACCTCAACTACA
TCAGCCCTTCCTCCGCTCTTAGACCAGTTAAGTATGCGCCAGCCGCCCCC
ATCGGGCACCTCGACAAATACCAAGATGCCAGTGACAACACGAATTAGGC
CTTTGTCACGAAGCTCCCTTGAAAGCACCATGGACGAACTAAGCGAAGTG
AGTGGAGGCGTCTCAGGCGAAGATACGAGTAAATTATCCGAGCCCGAAAA
CTCGTTACGACGGCCCTTCTGGCAGTTGAATCTCCTTCGAGCCACCATCA
CGACGGGAGGATTTCTCACACCGCGCTTACATGTACCTCGCTTGGTCTGG
GAACAATGGGGCGCCAAGTTGAACGGTTTGACCACCAAAGCCACAGCTTT
TGAGGCTGTCTTAAGTCTACTTGTGGACCGCATTTTGCCCTTGGAGCTCC
TATCGAGCATCAATGACCCCAGCAGGAAAACCCAAAATGAGGATGGCGAG
GCCGCAAGGAGGGACCTAGCTAAGGTACTGCGGATTTTTGAGGAAGTGCG
CGCCGAGTTTGACTTTCTGCAAAACTCTCTCGCGCGGCTCTTTCTCTTTA
TCAAAGAAGTCCCCCCTACCGCCACCAGCAGCAGCACCAGTAACAGCAGC
AGTAACGGCAGCATAGCAATAGCGCTTGCGTCGTCATCCTCCTCCTCCGC
CGCCTCTTCATTTTATTTGGGAAGTGGTGGGGGCATGCAGCAAGTGCGGG
GATTCATGACTTCTTTTCGCAATAAGATTCAAAGAAGCGCAGTCTCTGCG
ATGACTGCGGTTGAACGCATAGGGGTGGCCTTGCCTGCCAAAATAAATGA
TGAAGACCTCTTATCCTACGCTAGCTTGGTCTCTGAGATGTGTCATAAGG
CCCAGAGGCTCGACGAATGGTTTGTTTCCCTGGATTGTCGGAGAAGAGAG
TTACAGGAAGCATTGCGAAGAGAGGCATCTCCGTCAGCTTCATCTACTTC
TTCCTCTTCCGCGTCCTCCTTTTCTTCCTCATCTTTATCAGGGAAAGAAG
CAACCCAAGCGCTGTTGCACCAAGTGGAGGGCATTCTGGTGGAATTGCTG
CATTGTGCCAGATTTCTGCAGGAGGTGGTGATCGAGCTTCTTCTACGAGA
CGTAGAATCGTTGGTGGACTCGTATTTGCGCAAGGCCCGCAAAGTGTTCA
CGAGAATGGTTTGGGAGTTGGAGGAGCAGGAGAATAGCTAG back to topCoding sequence (CDS) from alignment at chr6:830105..831445- >NO06G02890.1 ID=NO06G02890.1|Name=NO06G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr6:830105..831445- (Nannochloropsis oceanica) ATGCCGGACATTTGTCCGTCGCCCGCGCTTAAGAGCAGCAAAGACGACTC GGAGATGACACATGAGTCCCGGCTTGCCGACACAGGCAGGAGCAGCATTT CTACCCTCGACGTGACACCCACAGCATCATCGCATCCCACCTCAACTACA TCAGCCCTTCCTCCGCTCTTAGACCAGTTAAGTATGCGCCAGCCGCCCCC ATCGGGCACCTCGACAAATACCAAGATGCCAGTGACAACACGAATTAGGC CTTTGTCACGAAGCTCCCTTGAAAGCACCATGGACGAACTAAGCGAAGTG AGTGGAGGCGTCTCAGGCGAAGATACGAGTAAATTATCCGAGCCCGAAAA CTCGTTACGACGGCCCTTCTGGCAGTTGAATCTCCTTCGAGCCACCATCA CGACGGGAGGATTTCTCACACCGCGCTTACATGTACCTCGCTTGGTCTGG GAACAATGGGGCGCCAAGTTGAACGGTTTGACCACCAAAGCCACAGCTTT TGAGGCTGTCTTAAGTCTACTTGTGGACCGCATTTTGCCCTTGGAGCTCC TATCGAGCATCAATGACCCCAGCAGGAAAACCCAAAATGAGGATGGCGAG GCCGCAAGGAGGGACCTAGCTAAGGTACTGCGGATTTTTGAGGAAGTGCG CGCCGAGTTTGACTTTCTGCAAAACTCTCTCGCGCGGCTCTTTCTCTTTA TCAAAGAAGTCCCCCCTACCGCCACCAGCAGCAGCACCAGTAACAGCAGC AGTAACGGCAGCATAGCAATAGCGCTTGCGTCGTCATCCTCCTCCTCCGC CGCCTCTTCATTTTATTTGGGAAGTGGTGGGGGCATGCAGCAAGTGCGGG GATTCATGACTTCTTTTCGCAATAAGATTCAAAGAAGCGCAGTCTCTGCG ATGACTGCGGTTGAACGCATAGGGGTGGCCTTGCCTGCCAAAATAAATGA TGAAGACCTCTTATCCTACGCTAGCTTGGTCTCTGAGATGTGTCATAAGG CCCAGAGGCTCGACGAATGGTTTGTTTCCCTGGATTGTCGGAGAAGAGAG TTACAGGAAGCATTGCGAAGAGAGGCATCTCCGTCAGCTTCATCTACTTC TTCCTCTTCCGCGTCCTCCTTTTCTTCCTCATCTTTATCAGGGAAAGAAG CAACCCAAGCGCTGTTGCACCAAGTGGAGGGCATTCTGGTGGAATTGCTG CATTGTGCCAGATTTCTGCAGGAGGTGGTGATCGAGCTTCTTCTACGAGA CGTAGAATCGTTGGTGGACTCGTATTTGCGCAAGGCCCGCAAAGTGTTCA CGAGAATGGTTTGGGAGTTGGAGGAGCAGGAGAATAGCTAG back to top
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