NO06G01040.1, NO06G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01040.1
Unique NameNO06G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr6:336750..338340 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:336750..338340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01040.1 vs.
Match: EWM26084.1 (methylisocitrate lyase [Nannochloropsis gaditana])

HSP 1 Score: 483.4 bits (1243), Expect = 6.100e-133
Identity = 260/357 (72.83%), Postives = 293/357 (82.07%), Query Frame = 0 
Query:    2 PSSSASARLRRLLSSSLSTPYPRSLAMPGAFNGLVARAVAHAGFEATYVSGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTGGEGGREGVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAAEARDEE--AEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGADMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLSTIKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMTREETYELLGYTPGKEWVYPSANARGEGRGGGKRSGFVQTGGPV-GKGDEEERGGVG 356
            P  S++ARLR LL+   +     SLA+PGAFNGLVARAVA+AGFEATYVSGAGVAAGMGLPD+GLAG+ED TRV+RDVS CSGLPL+ADADTGGEGG  GVRR+V EYRRAGAA LH+EDQVFPKRCGHL+GK+LVP  +FALK+QAAA ARDE   A EEG G     GG++ICARTDARSV G+E+VIERAK+YVDAGADMIFPEGL +  EFL+VS+AL+GYNGVN GEGP+LLANMTEFGKTPLLS  +MG LGYH TIFPMTLFR AMRGV+E LEELREGGRV    LREGRL+TREETYELLGYTPG+ W YP+ANA    R G +RS FVQ G  V  + DE E  G G
Sbjct:    3 PPPSSAARLRLLLAGLSARQ--ESLALPGAFNGLVARAVANAGFEATYVSGAGVAAGMGLPDVGLAGLEDMTRVIRDVSACSGLPLLADADTGGEGGEGGVRRVVMEYRRAGAAALHVEDQVFPKRCGHLEGKELVPADEFALKVQAAARARDEGRVAGEEGGGN----GGLMICARTDARSVVGVEEVIERAKRYVDAGADMIFPEGLCSGDEFLRVSQALKGYNGVNGGEGPYLLANMTEFGKTPLLSVRRMGALGYHATIFPMTLFRWAMRGVVEALEELREGGRVSKTALREGRLLTREETYELLGYTPGRVWEYPNANAYSR-RKGTRRSDFVQEGKEVMEEEDENEASGYG 352
The following BLAST results are available for this feature:
BLAST of NO06G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26084.16.100e-13372.83methylisocitrate lyase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01040NO06G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01040.1NO06G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01040.1.cds1NO06G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01040.1.cds2NO06G01040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01040.1.cds3NO06G01040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01040.1 ID=NO06G01040.1|Name=NO06G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
ATGCCATCCTCCTCCGCCAGCGCCCGCCTCCGCCGCCTCCTCTCCTCCTC
CCTCTCTACCCCCTATCCACGAAGCCTGGCCATGCCCGGTGCGTTCAATG
GTCTCGTTGCACGTGCAGTCGCACATGCAGGCTTTGAAGCTACCTATGTG
TCAGGCGCGGGCGTTGCTGCAGGAATGGGGTTGCCTGACATTGGACTGGC
AGGCATCGAGGATTTCACACGCGTCGTTCGCGACGTGTCCACCTGCTCCG
GTCTCCCCTTAATCGCCGACGCCGATACCGGAGGAGAGGGCGGGAGGGAG
GGCGTGCGTCGGCTTGTCTTCGAGTACAGGCGAGCAGGAGCCGCTGGTTT
GCACATTGAAGATCAGGTTTTCCCAAAGAGATGTGGTCATTTGGATGGAA
AGCAATTGGTTCCCACCGCAGACTTTGCCTTGAAAATACAGGCAGCAGCG
GAAGCGAGGGACGAGGAAGCAGAAGAGGAAGGTCAAGGAGGGAGGGAGAA
GGAGGGAGGGATGGTGATCTGCGCGAGGACAGATGCAAGGTCGGTAGAAG
GGATTGAGAAGGTGATTGAGCGGGCGAAGCAGTATGTTGATGCGGGGGCG
GACATGATCTTCCCAGAGGGTTTGTACACGGCGGCGGAGTTTTTAAAAGT
GAGCAAGGCCTTGAGAGGTTACAATGGGGTGAATGAAGGAGAAGGGCCGT
TTCTCTTGGCAAATATGACGGAGTTTGGAAAGACACCTCTGCTCTCTACC
ATCAAAATGGGTGAGCTCGGCTATCACTGCACCATTTTTCCCATGACTCT
TTTCCGACGGGCCATGCGTGGAGTCATGGAAGGGTTGGAGGAGCTGAGGG
AGGGCGGGAGGGTGAAAGGGAAAACGTTGAGGGAGGGGAGATTGATGACA
AGGGAGGAGACGTATGAACTTCTGGGATATACGCCTGGGAAGGAGTGGGT
TTACCCGAGCGCGAACGCAAGGGGGGAGGGAAGGGGGGGAGGGAAAAGGA
GTGGGTTTGTACAGACTGGGGGGCCTGTGGGCAAGGGGGATGAGGAGGAA
AGAGGAGGAGTGGGAAGAGGAAAAGTGAGGTAG
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protein sequence of NO06G01040.1

>NO06G01040.1-protein ID=NO06G01040.1-protein|Name=NO06G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MPSSSASARLRRLLSSSLSTPYPRSLAMPGAFNGLVARAVAHAGFEATYV
SGAGVAAGMGLPDIGLAGIEDFTRVVRDVSTCSGLPLIADADTGGEGGRE
GVRRLVFEYRRAGAAGLHIEDQVFPKRCGHLDGKQLVPTADFALKIQAAA
EARDEEAEEEGQGGREKEGGMVICARTDARSVEGIEKVIERAKQYVDAGA
DMIFPEGLYTAAEFLKVSKALRGYNGVNEGEGPFLLANMTEFGKTPLLST
IKMGELGYHCTIFPMTLFRRAMRGVMEGLEELREGGRVKGKTLREGRLMT
REETYELLGYTPGKEWVYPSANARGEGRGGGKRSGFVQTGGPVGKGDEEE
RGGVGRGKVR*
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mRNA from alignment at chr6:336750..338340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01040.1 ID=NO06G01040.1|Name=NO06G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1591bp|location=Sequence derived from alignment at chr6:336750..338340- (Nannochloropsis oceanica)
ATGCCATCCTCCTCCGCCAGCGCCCGCCTCCGCCGCCTCCTCTCCTCCTC
CCTCTCTACCCCCTATCCACGAAGCCTGGCCATGCCCGGTGCGTTCAATG
GTCTCGTTGCACGTGCAGTCGCACATGCAGGCTTTGAAGCTACCTATGTG
TCAGGCGCGGGCGTTGCTGCAGGAATGGGGTTGCCTGACATTGGACTGGC
AGGTAAGCAGAATGAGAGGTTGAAAGGCTTTGTGGGCGCAGACTCTGCCT
TAGCTCCTTTCTTTCCCTCTTGATTTTAGTTCCTTCCATTTCTCTTTTAT
ACTCTCTTGCAGCTCCCTGCTTCTCAGACGCCCAATCCCTTCTTCGCTCC
CTTCCTCCCTAGGCCTAGGAGTTTTTGTTCGCATAACCAAAGACATGTTA
TCTTGCTCCAGACTCCCCCCCACCCCATCGACCTTCTCTCTCTCTCTGTC
CCTCCCTCCTCTTCTTTCCCTTCCTACATTGTTCACCTTCGGCAAATTTG
CAACCCCTCATTTTCATCTTTCCCTCCCTCACTCCCTCCCTCTTTCTCCC
AAGGCATCGAGGATTTCACACGCGTCGTTCGCGACGTGTCCACCTGCTCC
GGTCTCCCCTTAATCGCCGACGCCGATACCGGAGGAGAGGGCGGGAGGGA
GGGCGTGCGTCGGCTTGTCTTCGAGTACAGGCGAGCAGGAGCCGCTGGTT
TGCACATTGAAGATCAGGTTTTCCCAAAGAGATGTGGTCATTTGGATGGA
AAGCAATTGGTTCCCACCGCAGACTTTGCCTTGAAAATACAGGCAGCAGC
GGAAGCGAGGGACGAGGAAGCAGAAGAGGAAGGTCAAGGAGGGAGGGAGA
AGGAGGGAGGGATGGTGATCTGCGCGAGGACAGATGCAAGGTCGGTAGAA
GGGATTGAGAAGGTGATTGAGCGGGCGAAGCAGTATGTTGATGCGGGGGC
GGACATGATCTTCCCAGAGGGTTTGTACACGGCGGCGGAGTTTTTAAAAG
TGAGCAAGGCCTTGAGAGGTTACAATGGGGTGAATGAAGGAGAAGGGCCG
TTTCTCTTGGCAAATATGACGGAGTTTGGAAAGACACCTCTGCTCTCTAC
CATCAAAATGGGTGAGTGAGTCGGGAGGGAGGACGGGGAGTGGAGGCATC
TGTCGAGCGTGTCCCACTTACGCGAATGCTACTTTCCCTCGTCTTTTCTT
TGTGTTGTTTTCCGTTTTTAACCTCCCTTCTTCTCTCTTTGTCCCCATTT
CCCTTTTTCTCCTCCTAGGTGAGCTCGGCTATCACTGCACCATTTTTCCC
ATGACTCTTTTCCGACGGGCCATGCGTGGAGTCATGGAAGGGTTGGAGGA
GCTGAGGGAGGGCGGGAGGGTGAAAGGGAAAACGTTGAGGGAGGGGAGAT
TGATGACAAGGGAGGAGACGTATGAACTTCTGGGATATACGCCTGGGAAG
GAGTGGGTTTACCCGAGCGCGAACGCAAGGGGGGAGGGAAGGGGGGGAGG
GAAAAGGAGTGGGTTTGTACAGACTGGGGGGCCTGTGGGCAAGGGGGATG
AGGAGGAAAGAGGAGGAGTGGGAAGAGGAAAAGTGAGGTAG
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Coding sequence (CDS) from alignment at chr6:336750..338340-

>NO06G01040.1 ID=NO06G01040.1|Name=NO06G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr6:336750..338340- (Nannochloropsis oceanica)
ATGCCATCCTCCTCCGCCAGCGCCCGCCTCCGCCGCCTCCTCTCCTCCTC
CCTCTCTACCCCCTATCCACGAAGCCTGGCCATGCCCGGTGCGTTCAATG
GTCTCGTTGCACGTGCAGTCGCACATGCAGGCTTTGAAGCTACCTATGTG
TCAGGCGCGGGCGTTGCTGCAGGAATGGGGTTGCCTGACATTGGACTGGC
AGGCATCGAGGATTTCACACGCGTCGTTCGCGACGTGTCCACCTGCTCCG
GTCTCCCCTTAATCGCCGACGCCGATACCGGAGGAGAGGGCGGGAGGGAG
GGCGTGCGTCGGCTTGTCTTCGAGTACAGGCGAGCAGGAGCCGCTGGTTT
GCACATTGAAGATCAGGTTTTCCCAAAGAGATGTGGTCATTTGGATGGAA
AGCAATTGGTTCCCACCGCAGACTTTGCCTTGAAAATACAGGCAGCAGCG
GAAGCGAGGGACGAGGAAGCAGAAGAGGAAGGTCAAGGAGGGAGGGAGAA
GGAGGGAGGGATGGTGATCTGCGCGAGGACAGATGCAAGGTCGGTAGAAG
GGATTGAGAAGGTGATTGAGCGGGCGAAGCAGTATGTTGATGCGGGGGCG
GACATGATCTTCCCAGAGGGTTTGTACACGGCGGCGGAGTTTTTAAAAGT
GAGCAAGGCCTTGAGAGGTTACAATGGGGTGAATGAAGGAGAAGGGCCGT
TTCTCTTGGCAAATATGACGGAGTTTGGAAAGACACCTCTGCTCTCTACC
ATCAAAATGGGTGAGCTCGGCTATCACTGCACCATTTTTCCCATGACTCT
TTTCCGACGGGCCATGCGTGGAGTCATGGAAGGGTTGGAGGAGCTGAGGG
AGGGCGGGAGGGTGAAAGGGAAAACGTTGAGGGAGGGGAGATTGATGACA
AGGGAGGAGACGTATGAACTTCTGGGATATACGCCTGGGAAGGAGTGGGT
TTACCCGAGCGCGAACGCAAGGGGGGAGGGAAGGGGGGGAGGGAAAAGGA
GTGGGTTTGTACAGACTGGGGGGCCTGTGGGCAAGGGGGATGAGGAGGAA
AGAGGAGGAGTGGGAAGAGGAAAAGTGAGGTAG
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Synonyms
Publications