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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:246583..248997 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00670.1 vs.
Match: EWM26081.1 (Replication factor Mcm10 [Nannochloropsis gaditana]) HSP 1 Score: 358.2 bits (918), Expect = 6.000e-95 Identity = 281/673 (41.75%), Postives = 372/673 (55.27%), Query Frame = 0
Query: 66 APLLPPTSLGDLVASRRKATPTTTLTTTKLIPFQLRTVNLSSDEIESLLQDRVLKRLSSLISFLHGETAASLPDFAIVGVLSKKGPRKLSRNGKDYAEWLIDDLEGRSVKILIFGGALVGGQSLPVGAVCLLLQPKPLDSGPGRLAAPSLAIYEPSQVVLVGISANFATCGFTDVRGFQCDKVYNRLMARFCEQHSRSSSGRTDMQRGKVASGPRFTALPSDAATMVPTPGQQCQGGTGLIVRPNLIRNPVPKKQAGAAAGSGKRKERLERMIKQGQPYRAYRWQPTLVNSSKKLDAVGAAASGTDKGSSCSSCSSSSSSNSSKSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSRSSSRSSDGDRWAGGARRGASGSVIVPQKMEGDRVREVAAILAMDEPKKDGDVLVPEPSRIFERGGDAVAYALFKHQQEAARMAREAAAFHCRQLQQKKSEAKAVQALKIRKGLGGTLRMAPKLAVSASIFNVPGTAPMPAGHGSRQQYRSGMKAEEAEKLMKSKSKHSAEARSELMGHLDGVFEALHEKEARAEELKVLSSIDITAFHCSECDRFYEKHPSLCAHNKHRLRKAPIKKRFFLCGNIGCTGETAVLGLTAPREACDRCGEKLWRAKGKGNTAAAGD---GKRGGVGNLILSISESNRNADVSTLY 736
APL P L A PT ++LIPF+L T+ SSDEIE+ + R L +++ + L P++A+VGVL +K PRK S+NG +Y W ID+L+G+S+KIL+FG A++ G+++P+GAVCLLL P + S P AA SL I++P QV+ +G+SA++ATCGF D GF+CDKVYNR RF + S P Q + PN + P + ++ +G + R + +P + + +D + K + K S + + S ++ + + S +N + + GDR S + V Q + + VR +AAILA DE KDG+VL+PEPSRIF RG D+VAYA F+H+QEA R AR+ A RQLQQK+SEAKAV+A+ K +GGT+RM K T P AG+ RQ Y GM EAE LMKSKSKHSAEAR ELM HL GVFEAL EKE RAE K LSSI++ A C EC+R +EKHP LCA H L++ IKKRFF+CGN GC+ E ++LG AP EAC RCGEKLWRAKGKG+ AAAG K GVG LI ++SE NRNAD+S+LY
Sbjct: 37 APLSPCKGLPLTHPCAIDAAPTKM---SRLIPFELSTLKKSSDEIENSIAGRPLLQVNDIGGVLS-------PNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDP--VGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNR-------------------------HNARFCKVHS-----ATPPSSQA------LSLPNRVAITAPSRAITSSLPTGTTRPC---------GLRGHNGKPHISRPTMSVDRPSSLIQKPGKIARYQPKKRELLEKIIKRDQPHRSYTWQPTLSRTARTVNVPESRTNQTFDGHVGGTNLGTGDR---------SARMDVQQTAKENGVRGIAAILAADELNKDGEVLIPEPSRIFARGPDSVAYAAFRHEQEAKRQARQVGALQYRQLQQKQSEAKAVRAMNFCKRMGGTIRMIQKPENVMLKPKPRMTVPSSAGN-RRQLYADGMGLNEAESLMKSKSKHSAEARGELMEHLHGVFEALGEKETRAEYFKNLSSIEVVAVSCQECNRLFEKHPRLCAKRGHILKRLTIKKRFFICGNQGCSEEVSMLGSAAPHEACSRCGEKLWRAKGKGSKAAAGGDTRAKSNGVGVLIPAVSEWNRNADLSSLY 642
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00670.1 ID=NO06G00670.1|Name=NO06G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2211bp ATGGATGACGAGCTGAGAGCGTTGTTGCAGCAAGCGCAACAACAAAAGAA TAAGCGACAACGCACGATGGAGCCGAGACCTCCTTCCACAACGCCCATGC AAGGCCCGCCAACTGTCACTCTGGCTGATTTAGCTGCCCGTATGCATCCA TCCACGGCGATCAGGAACCCTCTTACCCCCTCTTCTTTCACGACGGCGCC CTTGCTGCCCCCCACTTCCCTCGGCGATCTCGTTGCATCTCGCAGGAAAG CAACACCCACTACGACATTGACGACAACGAAGCTGATTCCTTTCCAACTT CGCACGGTAAATTTGTCATCAGACGAAATTGAATCGCTACTCCAGGACCG TGTGCTCAAGAGACTTAGCTCTTTGATCTCTTTTTTGCACGGGGAGACGG CCGCTTCTTTACCTGACTTTGCCATCGTAGGGGTTTTGAGCAAGAAGGGG CCTCGAAAGCTAAGCCGAAACGGCAAGGACTACGCCGAGTGGTTAATAGA TGACCTGGAGGGACGCTCAGTCAAAATCTTGATATTTGGGGGTGCATTAG TGGGCGGTCAAAGCCTGCCTGTAGGCGCTGTCTGCCTCCTCTTGCAGCCC AAGCCTCTGGACTCCGGGCCCGGGCGGTTGGCAGCCCCATCTTTGGCTAT CTACGAACCCTCCCAGGTTGTGCTAGTTGGCATTTCTGCCAACTTTGCGA CGTGCGGTTTCACGGATGTACGGGGATTTCAATGCGACAAGGTCTACAAT CGCCTCATGGCCCGCTTCTGCGAACAGCATTCTCGATCAAGTTCAGGCAG GACGGACATGCAGCGGGGCAAGGTGGCCTCCGGCCCGAGATTTACTGCGC TCCCTTCAGATGCGGCAACCATGGTACCTACACCAGGGCAGCAATGCCAG GGCGGTACTGGGCTCATCGTCCGGCCCAATTTGATAAGGAACCCTGTCCC GAAGAAGCAAGCAGGAGCAGCAGCGGGGTCCGGGAAAAGGAAGGAAAGGC TTGAGAGGATGATCAAGCAGGGTCAGCCTTACCGTGCATATCGATGGCAG CCTACCCTAGTGAATAGCAGCAAGAAGCTGGACGCTGTTGGGGCAGCGGC GAGCGGCACAGACAAGGGCAGTAGTTGTAGCAGCTGCAGCAGCAGTAGTA GTAGTAATAGTAGTAAAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG TAATAGTAGTAGTAGTAGTAGTCGTAGTAGTAGTCGTAGCAGTGATGGTG ACAGATGGGCTGGCGGCGCAAGGAGGGGTGCCAGCGGGAGCGTGATTGTC CCCCAAAAGATGGAAGGCGACAGAGTGCGGGAGGTTGCGGCTATCTTGGC AATGGACGAGCCCAAGAAGGATGGGGATGTACTTGTTCCGGAACCGTCAC GCATCTTTGAGCGTGGCGGGGACGCTGTCGCTTACGCTTTGTTCAAGCAC CAGCAGGAGGCAGCACGTATGGCGCGAGAAGCGGCTGCCTTCCACTGCCG ACAGCTGCAGCAGAAGAAGAGCGAGGCCAAGGCCGTTCAGGCTCTCAAGA TCCGTAAGGGCTTGGGCGGTACGCTTCGAATGGCTCCGAAGCTGGCCGTA TCTGCATCCATATTCAACGTGCCCGGCACGGCGCCCATGCCGGCAGGTCA TGGCTCGCGGCAGCAGTACCGGAGTGGTATGAAGGCAGAGGAGGCGGAGA AGCTCATGAAGAGCAAGTCCAAGCATTCCGCGGAGGCCCGCAGTGAACTC ATGGGCCACCTCGACGGTGTCTTCGAGGCCCTACACGAGAAGGAAGCCCG CGCAGAGGAGCTCAAGGTGCTTTCTTCTATCGACATCACCGCCTTTCACT GCAGCGAATGCGACAGGTTTTACGAGAAGCACCCCAGCCTGTGCGCCCAT AATAAGCATCGCCTGAGAAAAGCGCCTATTAAGAAGCGCTTCTTCCTTTG CGGCAACATCGGCTGCACTGGCGAGACGGCTGTCTTGGGCCTGACAGCCC CGCGAGAGGCGTGCGACCGTTGCGGAGAGAAGCTGTGGCGGGCAAAGGGG AAAGGTAACACAGCTGCAGCCGGCGACGGCAAGCGTGGTGGCGTGGGGAA CCTGATTTTAAGCATATCAGAGTCAAACAGAAACGCCGATGTATCGACTC TGTATGCATAG back to topprotein sequence of NO06G00670.1 >NO06G00670.1-protein ID=NO06G00670.1-protein|Name=NO06G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=737bp MDDELRALLQQAQQQKNKRQRTMEPRPPSTTPMQGPPTVTLADLAARMHP STAIRNPLTPSSFTTAPLLPPTSLGDLVASRRKATPTTTLTTTKLIPFQL RTVNLSSDEIESLLQDRVLKRLSSLISFLHGETAASLPDFAIVGVLSKKG PRKLSRNGKDYAEWLIDDLEGRSVKILIFGGALVGGQSLPVGAVCLLLQP KPLDSGPGRLAAPSLAIYEPSQVVLVGISANFATCGFTDVRGFQCDKVYN RLMARFCEQHSRSSSGRTDMQRGKVASGPRFTALPSDAATMVPTPGQQCQ GGTGLIVRPNLIRNPVPKKQAGAAAGSGKRKERLERMIKQGQPYRAYRWQ PTLVNSSKKLDAVGAAASGTDKGSSCSSCSSSSSSNSSKSSSSSSSSSSS SSSSSSSSSSSSSSSSSNSSSSSSRSSSRSSDGDRWAGGARRGASGSVIV PQKMEGDRVREVAAILAMDEPKKDGDVLVPEPSRIFERGGDAVAYALFKH QQEAARMAREAAAFHCRQLQQKKSEAKAVQALKIRKGLGGTLRMAPKLAV SASIFNVPGTAPMPAGHGSRQQYRSGMKAEEAEKLMKSKSKHSAEARSEL MGHLDGVFEALHEKEARAEELKVLSSIDITAFHCSECDRFYEKHPSLCAH NKHRLRKAPIKKRFFLCGNIGCTGETAVLGLTAPREACDRCGEKLWRAKG KGNTAAAGDGKRGGVGNLILSISESNRNADVSTLYA* back to topmRNA from alignment at chr6:246583..248997- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00670.1 ID=NO06G00670.1|Name=NO06G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2415bp|location=Sequence derived from alignment at chr6:246583..248997- (Nannochloropsis oceanica) ATGGATGACGAGCTGAGAGCGTTGTTGCAGCAAGCGCAACAACAAAAGAA
TAAGCGACAACGCACGATGGAGCCGAGACCTCCTTCCACAACGCCCATGC
AAGGCCCGCCAACTGTCACTCTGGCTGATTTAGCTGCCCGTATGCATCCA
TCCACGGCGATCAGGAACCCTCTTACCCCCTCTTCTTTCACGACGGCGCC
CTTGCTGCCCCCCACTTCCCTCGGCGATCTCGTTGCATCTCGCAGGAAAG
CAACACCCACTACGACATTGACGACAACGAAGCTGATTCCTTTCCAACTT
CGCACGGTAAATTTGTCATCAGACGAAATTGAATCGCTACTCCAGGACCG
TGTGCTCAAGAGACTTAGCTCTTTGATCTCTTTTTTGCACGGGGAGACGG
CCGCTTCTTTACCTGACTTTGCCATCGTAGGGGTTTTGAGCAAGAAGGGG
CCTCGAAAGCTAAGCCGAAACGGCAAGGACTACGCCGAGTGGTTAATAGA
TGACCTGGAGGGACGCTCAGTCAAAATCTTGATATTTGGGGGTGCATTAG
TGGGCGGTCAAAGCCTGCCTGTAGGCGCTGTCTGCCTCCTCTTGCAGCCC
AAGCCTCTGGACTCCGGGCCCGGGCGGTTGGCAGCCCCATCTTTGGCTAT
CTACGAACCCTCCCAGGTTGTGCTAGTTGGCATTTCTGCCAACTTTGCGA
CGTGCGGTTTCACGGATGTACGGGGATTTCAATGCGACAAGGTCTACAAT
CGCCTCATGGCCCGCTTCTGCGAACAGCATTCTCGATCAAGTTCAGGCAG
GACGGACATGCAGCGGGGCAAGGTGGCCTCCGGCCCGAGATTTACTGCGC
TCCCTTCAGATGCGGCAACCATGGTACCTACACCAGGGCAGCAATGCCAG
GGCGGTACTGGGCTCATCGTCCGGCCCAATTTGATAAGGAACCCTGTCCC
GAAGAAGCAAGCAGGAGCAGCAGCGGGGTCCGGGAAAAGGAAGGAAAGGC
TTGAGAGGATGATCAAGCAGGGTCAGCCTTACCGTGCATATCGATGGCAG
CCTACCCTAGTGAATAGCAGCAAGAAGCTGGACGCTGTTGGGGCAGCGGC
GAGCGGCACAGACAAGGGCAGTAGTTGTAGCAGCTGCAGCAGCAGTAGTA
GTAGTAATAGTAGTAAAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAATAGTAGTAGTAGTAGTAGTCGTAGTAGTAGTCGTAGCAGTGATGGTG
ACAGATGGGCTGGCGGCGCAAGGAGGGGTGCCAGCGGGAGCGTGATTGTC
CCCCAAAAGATGGAAGGCGACAGAGTGAGTAGAATACCGGAAAGACAGAA
TTCGCTGGAAATAGACCGTGTGGTCGATTGTCTAATATTCCCTTCTATCG
CCCTCTGGTCCCTTCTTTACTCTTATCTTTCATGCCCTAGGTGCGGGAGG
TTGCGGCTATCTTGGCAATGGACGAGCCCAAGAAGGATGGGGATGTACTT
GTTCCGGAACCGTCACGCATCTTTGAGCGTGGCGGGGACGCTGTCGCTTA
CGCTTTGTTCAAGCACCAGCAGGAGGCAGCACGTATGGCGCGAGAAGCGG
CTGCCTTCCACTGCCGACAGCTGCAGCAGAAGAAGAGCGAGGCCAAGGCC
GTTCAGGCTCTCAAGATCCGTAAGGGCTTGGGCGGTACGCTTCGAATGGC
TCCGAAGCTGGCCGTATCTGCATCCATATTCAACGTGCCCGGCACGGCGC
CCATGCCGGCAGGTCATGGCTCGCGGCAGCAGTACCGGAGTGGTATGAAG
GCAGAGGAGGCGGAGAAGCTCATGAAGAGCAAGTCCAAGCATTCCGCGGA
GGCCCGCAGTGTAAGTCGGGTAGCCTGAAGTGAGCATATCAATTCCGATC
GGTGTGACATCATTCCCATCATTTCCTCTTCTCCCACACGCCATCCAGGA
ACTCATGGGCCACCTCGACGGTGTCTTCGAGGCCCTACACGAGAAGGAAG
CCCGCGCAGAGGAGCTCAAGGTGCTTTCTTCTATCGACATCACCGCCTTT
CACTGCAGCGAATGCGACAGGTTTTACGAGAAGCACCCCAGCCTGTGCGC
CCATAATAAGCATCGCCTGAGAAAAGCGCCTATTAAGAAGCGCTTCTTCC
TTTGCGGCAACATCGGCTGCACTGGCGAGACGGCTGTCTTGGGCCTGACA
GCCCCGCGAGAGGCGTGCGACCGTTGCGGAGAGAAGCTGTGGCGGGCAAA
GGGGAAAGGTAACACAGCTGCAGCCGGCGACGGCAAGCGTGGTGGCGTGG
GGAACCTGATTTTAAGCATATCAGAGTCAAACAGAAACGCCGATGTATCG
ACTCTGTATGCATAG back to topCoding sequence (CDS) from alignment at chr6:246583..248997- >NO06G00670.1 ID=NO06G00670.1|Name=NO06G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=2211bp|location=Sequence derived from alignment at chr6:246583..248997- (Nannochloropsis oceanica) ATGGATGACGAGCTGAGAGCGTTGTTGCAGCAAGCGCAACAACAAAAGAA TAAGCGACAACGCACGATGGAGCCGAGACCTCCTTCCACAACGCCCATGC AAGGCCCGCCAACTGTCACTCTGGCTGATTTAGCTGCCCGTATGCATCCA TCCACGGCGATCAGGAACCCTCTTACCCCCTCTTCTTTCACGACGGCGCC CTTGCTGCCCCCCACTTCCCTCGGCGATCTCGTTGCATCTCGCAGGAAAG CAACACCCACTACGACATTGACGACAACGAAGCTGATTCCTTTCCAACTT CGCACGGTAAATTTGTCATCAGACGAAATTGAATCGCTACTCCAGGACCG TGTGCTCAAGAGACTTAGCTCTTTGATCTCTTTTTTGCACGGGGAGACGG CCGCTTCTTTACCTGACTTTGCCATCGTAGGGGTTTTGAGCAAGAAGGGG CCTCGAAAGCTAAGCCGAAACGGCAAGGACTACGCCGAGTGGTTAATAGA TGACCTGGAGGGACGCTCAGTCAAAATCTTGATATTTGGGGGTGCATTAG TGGGCGGTCAAAGCCTGCCTGTAGGCGCTGTCTGCCTCCTCTTGCAGCCC AAGCCTCTGGACTCCGGGCCCGGGCGGTTGGCAGCCCCATCTTTGGCTAT CTACGAACCCTCCCAGGTTGTGCTAGTTGGCATTTCTGCCAACTTTGCGA CGTGCGGTTTCACGGATGTACGGGGATTTCAATGCGACAAGGTCTACAAT CGCCTCATGGCCCGCTTCTGCGAACAGCATTCTCGATCAAGTTCAGGCAG GACGGACATGCAGCGGGGCAAGGTGGCCTCCGGCCCGAGATTTACTGCGC TCCCTTCAGATGCGGCAACCATGGTACCTACACCAGGGCAGCAATGCCAG GGCGGTACTGGGCTCATCGTCCGGCCCAATTTGATAAGGAACCCTGTCCC GAAGAAGCAAGCAGGAGCAGCAGCGGGGTCCGGGAAAAGGAAGGAAAGGC TTGAGAGGATGATCAAGCAGGGTCAGCCTTACCGTGCATATCGATGGCAG CCTACCCTAGTGAATAGCAGCAAGAAGCTGGACGCTGTTGGGGCAGCGGC GAGCGGCACAGACAAGGGCAGTAGTTGTAGCAGCTGCAGCAGCAGTAGTA GTAGTAATAGTAGTAAAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG TAATAGTAGTAGTAGTAGTAGTCGTAGTAGTAGTCGTAGCAGTGATGGTG ACAGATGGGCTGGCGGCGCAAGGAGGGGTGCCAGCGGGAGCGTGATTGTC CCCCAAAAGATGGAAGGCGACAGAGTGCGGGAGGTTGCGGCTATCTTGGC AATGGACGAGCCCAAGAAGGATGGGGATGTACTTGTTCCGGAACCGTCAC GCATCTTTGAGCGTGGCGGGGACGCTGTCGCTTACGCTTTGTTCAAGCAC CAGCAGGAGGCAGCACGTATGGCGCGAGAAGCGGCTGCCTTCCACTGCCG ACAGCTGCAGCAGAAGAAGAGCGAGGCCAAGGCCGTTCAGGCTCTCAAGA TCCGTAAGGGCTTGGGCGGTACGCTTCGAATGGCTCCGAAGCTGGCCGTA TCTGCATCCATATTCAACGTGCCCGGCACGGCGCCCATGCCGGCAGGTCA TGGCTCGCGGCAGCAGTACCGGAGTGGTATGAAGGCAGAGGAGGCGGAGA AGCTCATGAAGAGCAAGTCCAAGCATTCCGCGGAGGCCCGCAGTGAACTC ATGGGCCACCTCGACGGTGTCTTCGAGGCCCTACACGAGAAGGAAGCCCG CGCAGAGGAGCTCAAGGTGCTTTCTTCTATCGACATCACCGCCTTTCACT GCAGCGAATGCGACAGGTTTTACGAGAAGCACCCCAGCCTGTGCGCCCAT AATAAGCATCGCCTGAGAAAAGCGCCTATTAAGAAGCGCTTCTTCCTTTG CGGCAACATCGGCTGCACTGGCGAGACGGCTGTCTTGGGCCTGACAGCCC CGCGAGAGGCGTGCGACCGTTGCGGAGAGAAGCTGTGGCGGGCAAAGGGG AAAGGTAACACAGCTGCAGCCGGCGACGGCAAGCGTGGTGGCGTGGGGAA CCTGATTTTAAGCATATCAGAGTCAAACAGAAACGCCGATGTATCGACTC TGTATGCATAG back to top
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