NO06G00340.1, NO06G00340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00340.1
Unique NameNO06G00340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length324
Alignment locationchr6:146789..148083 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:146789..148083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00340.1 vs.
Match: CCA18019.1 (hypothetical protein SORBIDRAFT_06g022770 [Albugo laibachii Nc14]; CCI46241.1 unnamed protein product [Albugo candida])

HSP 1 Score: 167.5 bits (423), Expect = 2.200e-38
Identity = 80/106 (75.47%), Postives = 93/106 (87.74%), Query Frame = 0 
Query:    3 SDKDGAPPGEEGVEDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKGKKA-KPQNKERYISKLFLRGDSVILVLRNPN 108
            +D D     +E  EDF KGPLS+L HSVKNN+QVL+NVRNNHKLL RVKAFDRHCN++LENVKEMWTEVPKSGKGKK+ KP NK+R++SKLFLRGDSV+LVLRNP+
Sbjct:    4 NDTDEFKRVQENEEDFQKGPLSILMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKSGKGKKSGKPVNKDRFVSKLFLRGDSVVLVLRNPH 109
The following BLAST results are available for this feature:
BLAST of NO06G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CCA18019.12.200e-3875.47hypothetical protein SORBIDRAFT_06g022770 [Albugo ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00340NO06G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00340.1NO06G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00340.1.cds1NO06G00340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00340.1.cds2NO06G00340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00340.1.cds3NO06G00340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00340.1.cds4NO06G00340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00340.1 ID=NO06G00340.1|Name=NO06G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=324bp
ATGGACTCGGACAAAGACGGGGCGCCACCGGGAGAGGAGGGAGTGGAGGA
CTTTAGCAAGGGCCCGTTGAGTGTCCTCTGGCATAGCGTCAAGAACAACA
CCCAGGTGCTGGTTAATGTCCGCAATAATCATAAGCTCCTTGGCCGGGTC
AAGGCATTTGACAGACATTGTAACCTGCTGCTAGAAAATGTGAAGGAGAT
GTGGACAGAGGTGCCCAAGAGTGGAAAGGGAAAGAAAGCCAAGCCGCAAA
ACAAGGAGCGGTACATTAGCAAGCTTTTCTTGAGAGGCGACTCAGTCATC
CTCGTCCTGCGCAACCCTAATTAA
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protein sequence of NO06G00340.1

>NO06G00340.1-protein ID=NO06G00340.1-protein|Name=NO06G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MDSDKDGAPPGEEGVEDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRV
KAFDRHCNLLLENVKEMWTEVPKSGKGKKAKPQNKERYISKLFLRGDSVI
LVLRNPN*
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mRNA from alignment at chr6:146789..148083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00340.1 ID=NO06G00340.1|Name=NO06G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1295bp|location=Sequence derived from alignment at chr6:146789..148083- (Nannochloropsis oceanica)
ATGGACTCGGACAAAGACGGGGCGCCACCGGGAGAGGAGGGAGTGGAGGA
CTTTAGCAAGGGCCCGTTGAGTGTCCTCTGGCATAGCGTCAAGGTGAGTT
GAGTAGGGAGGAGGGAGGAGAGAAAGGGGGAAAGTGAAGAGGAGAGAAAG
GAGCGGGTAATAAGAGAGGGACGGAGGACCAGGGCAACCGGAAGGAAAGT
GGGGCGTGTACTACCCGCATCCAGGCGAGGAAGTGGTAGGGGGGTAGGGA
GAGGGAGGGCTGCAGAACGGAGGACGGTAGCGAAAGGAGTGATGCTTTTC
TATGACAAAAAGCAAGCTTGGTAGACATTGACAGGGAGTCCCGAGACAAA
GAGGGAGGAAGATAAAGAAGGAGGGAAGGTGGAAGGAAAGGAGAGAGGGG
AGGAGGGACTGGAATGGTCGTCCGTCCCTCCCTCCCTAGGCTCCAGGTAG
ACGCAATGCCTCGACCTCTTTTATGCTTCGACGCTAGTCACTCGCCACCC
TATCTCCAAACCCCATGTTTCCATCCACGGGCACGCATTCCTTCCTTCGA
CTGACTCCTCCCTATCCTCCCTCCTTTATGTCCGTCCGATCAGAACAACA
CCCAGGTGCTGGTTAATGTCCGCAATAATCATAAGCTCCTTGGCCGGGTC
AAGGCATTTGACAGACATTGTAACCTGTAAGCAGGGGGAGGAGAGGGAGG
GAGAAAGGGACGGAAGGATGAACGGAGGGAGGGAGGGAGGGAGGGAGGAT
GGGACGTGGGAACAGGAGACATCGGCTGTGGGGGACGCCGCAACATGCCT
GATGCATTGTTTCTAGATGGTTCTATACATGGTTTCACGATAGTTCCATT
CCATAGTGTCTCGAAGCATGCTCTACACATCGTTCGACCATGATGTCACC
CACACCTCTTCCCTCCTTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCTC
CCTCCCTCCCTGTCTGCCTTGACCGGGGGAACAGGCTGCTAGAAAATGTG
AAGGAGATGTGGACAGAGGTGCCCAAGAGTGGAAAGGGAAAGAAAGCCAA
GCCGGTAAGGAGGGAGGGAGGGAGGGACAGTGATCTTGATGGCACCTCGT
CCTCATTCACTGGACCGTGCGACCCCCTCCCTCACACATCACTCTTCTCT
TCTTCCTCCTTCCCCCTCCTCCTCCTCCCCCTCCTCCTCCTCTTTCTTCC
TTCTCCTCCCTTCGCAGCAAAACAAGGAGCGGTACATTAGCAAGCTTTTC
TTGAGAGGCGACTCAGTCATCCTCGTCCTGCGCAACCCTAATTAA
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Coding sequence (CDS) from alignment at chr6:146789..148083-

>NO06G00340.1 ID=NO06G00340.1|Name=NO06G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at chr6:146789..148083- (Nannochloropsis oceanica)
ATGGACTCGGACAAAGACGGGGCGCCACCGGGAGAGGAGGGAGTGGAGGA
CTTTAGCAAGGGCCCGTTGAGTGTCCTCTGGCATAGCGTCAAGAACAACA
CCCAGGTGCTGGTTAATGTCCGCAATAATCATAAGCTCCTTGGCCGGGTC
AAGGCATTTGACAGACATTGTAACCTGCTGCTAGAAAATGTGAAGGAGAT
GTGGACAGAGGTGCCCAAGAGTGGAAAGGGAAAGAAAGCCAAGCCGCAAA
ACAAGGAGCGGTACATTAGCAAGCTTTTCTTGAGAGGCGACTCAGTCATC
CTCGTCCTGCGCAACCCTAATTAA
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Synonyms
Publications