NO06G00140.2, NO06G00140.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00140.2
Unique NameNO06G00140.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1813
Alignment locationchr6:61344..64368 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:61344..64368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00140.2 vs.
Match: XP_005777116.1 (Deoxyribodipyrimidine photolyase/cryptochrome [Emiliania huxleyi CCMP1516]; EOD24687.1 Deoxyribodipyrimidine photolyase/cryptochrome [Emiliania huxleyi CCMP1516])

HSP 1 Score: 178.7 bits (452), Expect = 3.300e-41
Identity = 112/283 (39.58%), Postives = 161/283 (56.89%), Query Frame = 0 
Query:    1 MRLELFFKTASELQTLIALVQGANIGAVNLVNKSKTDPLLQYVRTLKSAFPASSSSSSSSSSSSSSSPLDIVPHFSMKYQHVGRDTEGAYAHIKSFCTDAASEGVREVLLVSGSGPKRKLDPAACLERLSKDKQARGSFLSSLRFGVAFNPYLPEME---EEESRFRAKIATGLVSSVWLQLGSDTAALRKGLDFVRIETEGRSPPIRVIGSVVIPSRKFLAMMKFRPWSGVRLSETYLSSVEEANKATKAILNVYKAYGVEPIVESAVKNEADLEQVKNLLG 281
            MR E+F K    L T   L+       +N+ NK+        V       PA++  S +++ S++     + PH+S+K+ +  RD        ++FC +AAS  VRE+LLVSGSG  R  D  ACL+ L+   + R +       GVAFNP+ P+      E +R R K+ TG VS++WLQ+GSD   LR+ L F+  E  G  P +R+ GSV +PSRK LA +KFRPW+GV LS  YLSSVE A+  T  +L+ Y  +GVEP++ESAV++ A+    +  LG
Sbjct:    1 MRAEVFAKDTQSLVTASRLLLSVGARGINVPNKAT-------VAQNPELAPAAALHSLAAALSTTEMK-GVCPHYSLKFNNDARDPASTLRRFEAFCEEAASLHVREILLVSGSG-SRSFDSLACLKALTLPAERRPAI------GVAFNPFFPDRAARMRERARLRQKLNTGAVSAIWLQIGSDVLLLREALAFLA-ELRGVHPALRLYGSVFLPSRKLLAQLKFRPWNGVFLSAEYLSSVEVASTITCRVLDAYATHGVEPLLESAVRSRAEWRAAREQLG 267
The following BLAST results are available for this feature:
BLAST of NO06G00140.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005777116.13.300e-4139.58Deoxyribodipyrimidine photolyase/cryptochrome [Emi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00140NO06G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00140.2NO06G00140.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00140.2.cds1NO06G00140.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.2.cds2NO06G00140.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.2.cds3NO06G00140.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.2.cds4NO06G00140.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.2.cds5NO06G00140.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.2.cds6NO06G00140.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.2.cds7NO06G00140.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.2.cds8NO06G00140.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.2.cds9NO06G00140.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00140.2 ID=NO06G00140.2|Name=NO06G00140.2|organism=Nannochloropsis oceanica|type=mRNA|length=1813bp
CGCTGATGTGGTGTGGAGTGCTTCAATCGCTGATGACTCCCAGCGTGGCG
TGCCGGTATGCTCCGTGCTTGTCCAAGCAAATCCCGCCTCTTAGACACAC
GCGCGAGCACATGGGGTCTAAGACAAGGCGGTGAAGAAGACGCTCGACGT
ATTTGGTTACGGCTGTGTGCGGGCGAATATACCCTTTAAGAACCTCCTCA
CCCCCGCCCTCCCTCTCCCTCCCCTCCTTCCTTCCTTCCCATTTAAGCAA
CAGCCCTGCCCAGCAGCACAGATGCGTCTCGAACTCTTCTTCAAAACAGC
CTCGGAGCTGCAAACTCTTATTGCCCTGGTCCAAGGCGCAAACATCGGTG
CTGTCAATCTTGTCAACAAGAGCAAGACAGACCCGTTACTGCAATACGTG
CGGACACTCAAGAGCGCCTTCCCCGCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCGCCCTTGGACATCGTTCCGCATTTCTCTA
TGAAATATCAACACGTCGGTAGAGACACCGAGGGGGCCTACGCACACATC
AAGTCGTTCTGTACCGATGCCGCCTCCGAGGGAGTGAGGGAAGTCCTCCT
TGTCTCTGGGAGTGGACCCAAAAGAAAACTCGACCCGGCGGCGTGCCTGG
AGCGCCTGTCCAAGGACAAGCAAGCCCGGGGCTCCTTCCTCTCCTCCCTT
CGCTTTGGAGTGGCCTTCAACCCGTACCTACCTGAGATGGAAGAGGAGGA
GAGCCGTTTTCGAGCCAAAATAGCCACGGGCCTGGTGTCTTCAGTGTGGC
TGCAGCTCGGGAGCGACACCGCCGCCCTCAGGAAAGGCCTGGATTTTGTG
CGGATCGAAACGGAGGGGAGGAGTCCGCCCATCCGTGTCATCGGCTCCGT
CGTCATCCCCTCCAGAAAGTTCCTGGCCATGATGAAATTTCGACCCTGGA
GCGGTGTGCGTTTAAGTGAGACGTATCTCTCGTCAGTGGAGGAAGCGAAT
AAAGCCACCAAAGCCATTCTCAATGTCTACAAGGCATACGGAGTGGAGCC
TATCGTAGAGAGTGCCGTTAAAAACGAGGCGGATCTCGAGCAAGTGAAGA
ATCTGCTCGGCGACTTGTACGGCTCCTCTCCAACAAGCAGCAGCAGCAGC
AGTAAATCCGTAGGGGTCAGAAGAGGAGTAGGGGCAGCGGCACTCGGAGC
AGCAATAGCAGGAGGAGGGAGGGAGGGAGGGAGAGAGAGAGGGATGGAGG
GAGGGAGGGCAACGCGTACTCTTCACTCCGCCTTTCCTGCTACACCGACG
ACAGAGGCCGGTCAAAAAAGGGCGCGAAACGTTTCAGGAGGGGGGGAGGG
AGGAAGGGAGGGAGGGAGGGGGAAGGAAAGATAGGGCTGGTATGTGTGCT
GTGTTGAGAGGAACCGACGGAAGGAGGGAGGGAGGGAGGGAAGAAGGGAG
CGAGGAGAGGACGGAGGAAGGGCGCGAGGAAAGGAAGGAGAGAGGCGACA
AAGGTTAAAAATCGCATTAAATATTTCTTACTTTGGCTGTGTGCTGTTGT
AGCCTCTTTTTGATCTCACTCCGTCCTTCCTTCCCTACCTCACTCCTTCC
CCTCCCTTACTCCTTCCCCTCCCTCCCTCCTTCCTTAATCCTCTCCTTCC
TAACCACCTTCTCTCTCTCGTCTCCTCGTTGTGCTCCCTCCCTCTCTTCC
TTTCCCTTCCTTCCCTTCCTCTTCTCCTTGACATGCAGCAGAGACTTCCC
GCGCCTGCTGCACAACGACCTCCCTGTGCATCACACTGCCCCTCCCTCCC
TCCCTCCCTCCCT
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protein sequence of NO06G00140.2

>NO06G00140.2-protein ID=NO06G00140.2-protein|Name=NO06G00140.2|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MRLELFFKTASELQTLIALVQGANIGAVNLVNKSKTDPLLQYVRTLKSAF
PASSSSSSSSSSSSSSSPLDIVPHFSMKYQHVGRDTEGAYAHIKSFCTDA
ASEGVREVLLVSGSGPKRKLDPAACLERLSKDKQARGSFLSSLRFGVAFN
PYLPEMEEEESRFRAKIATGLVSSVWLQLGSDTAALRKGLDFVRIETEGR
SPPIRVIGSVVIPSRKFLAMMKFRPWSGVRLSETYLSSVEEANKATKAIL
NVYKAYGVEPIVESAVKNEADLEQVKNLLGDLYGSSPTSSSSSSKSVGVR
RGVGAAALGAAIAGGGREGGRERGMEGGRATRTLHSAFPATPTTEAGQKR
ARNVSGGGEGGREGGRGKER*
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mRNA from alignment at chr6:61344..64368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00140.2 ID=NO06G00140.2|Name=NO06G00140.2|organism=Nannochloropsis oceanica|type=mRNA|length=3025bp|location=Sequence derived from alignment at chr6:61344..64368+ (Nannochloropsis oceanica)
CGCTGATGTGGTGTGGAGTGCTTCAATCGCTGATGACTCCCAGCGTGGCG
TGCCGGTATGCTCCGTGCTTGTCCAAGCAAATCCCGCCTCTTAGACACAC
GCGCGAGCACATGGGGTCTAAGACAAGGCGGTGAAGAAGACGCTCGACGT
ATTTGGTTACGGCTGTGTGCGGGCGAATATACCCTTTAAGAACCTCCTCA
CCCCCGCCCTCCCTCTCCCTCCCCTCCTTCCTTCCTTCCCATTTAAGCAA
CAGCCCTGCCCAGCAGCACAGATGCGTCTCGAACTCTTCTTCAAAACAGC
CTCGGAGCTGCAAACTCTTATTGCCCTGGTCCAAGGCGCAAACATCGGTG
CTGTCAATCTTGTCAACAAGAGCAAGACAGACCCGTTACTGCAATACGTG
CGGACACTCAAGGTGAGAAGGTCCGGGTGTAATGAAAGGAAGCAAAGGAT
ACGAGGGGATAAGGAGGGAAGATAGGAGTATGGAGTGCCTGGGCATGCAT
CCTCACGCGCACCTAACTCGCTTAATGTCTCACCTTTCGTCGCCTGCAAC
AACAGAGCGCCTTCCCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCGCCCTTGGACATCGTTCCGCATTTCTCTATGAAATA
TCAACACGTCGGTAGAGACACCGAGGGGGCCTACGCACACATCAAGGTGC
GTTTGGCCCGCGTTTCCTCCCTGGAGTGTTTCTCTCATCCCTGCTCCATA
TCCCCGAATCAGCTCCAAATTACTCATCCTCCCTCCCTCCCTCCTTCCCT
CCGAATCTCCCTCATCTCCCTAGTCGTTCTGTACCGATGCCGCCTCCGAG
GGAGTGAGGGAAGTCCTCCTTGTCTCTGGGAGTGGACCCAAAAGAAAACT
CGACCCGGCGGCGTGCCTGGAGCGGTACGTGCCCTTCCTTCCCTCCCTCC
CTTCCTCCCTCCCTCGTCCTCCCTTCCCCCCTTCCATCCTCCCTAGCCCC
TCGTCCATGTCACTTGTCATCCACACTCGCCATTGGCCTTCCTTCCCTCC
CTTCTGCCTGCCCTCCCTCCCTCCCTCCCTGCATAGCCTGTCCAAGGACA
AGCAAGCCCGGGGCTCCTTCCTCTCCTCCCTTCGCTTTGGAGTGGCCTTC
AACCCGTACCTACCTGAGATGGAAGAGGAGGAGAGCCGTTTTCGAGGTAG
GTAGGGAGGGAGGGAGGGAAAGAGGGAGGGAGGAAAGGGGATCACAGTCG
ATGCATCACCTGAGCCTGAAAACACCTCCCTCCCTCCCCCCACCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCCAAA
ATAGCCACGGGCCTGGTGTCTTCAGTGTGGCTGCAGCTCGGGAGCGACAC
CGCCGCCCTCAGGAAAGGCCTGGATTTTGTGCGGATCGAAACGGAGGGGA
GGAGGTGAGAGAGGGAGGGAGGGAGGGAGGGAGGGTAGTGAGGCTCATGA
CATATATTAGCGGTCTTGCTACACGTATCGTTTTTCCAACTCTCCCTCCC
TTCCTCCCTCCCTCCTTCTTCCCCTCCCTCTCTCATTCCCTCCCTCAGTC
CGCCCATCCGTGTCATCGGCTCCGTCGTCATCCCCTCCAGAAAGTTCCTG
GCCATGGTGCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTC
CTCCTTCCCTCTCTCCTCCCTTTTTCCCTTCCCTCCATCCCTCCCTGTTT
CCCTCACCTCCCCTCCTCCCTCCTTCCCTCCCATCCTCCCTCCCTCACCT
CCTCCCTTCATCAGATGAAATTTCGACCCTGGAGCGGTGTGCGTTTAAGT
GAGACGTATCTCTCGTCAGTGGAGGAAGCGAATAAAGCCACCAAAGCCAT
TCTCAATGTCTACAAGGCATACGGAGGTCCGTCCCCGCCCTTCCTTCCTC
CCTCCCTCCCTCCCTCCCCCTCTCACTCCTTCCCTCCCTCCGGTCAATTT
TTTATTGCATCTGACATCTGCCTGCCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCAGTGGAGCCTATCGTAGAGAGTGCCG
TTAAAAACGAGGCGGATCTCGAGCAAGTGAAGAATCTGCTCGGCGACTTG
TACGGGTGAGGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGATATGGAGGCAGGCAGGCAGGGAGGGATATGGAGGGAGGGAGGGAG
GGAGGGAGGTATAATCAGGGAGGGAGGGAGGTATAATCGGAAACCGACTC
GCTTGTTATGCTCTTACCTCTCGTTCCTTTCCAGCTCCTCTCCAACAAGC
AGCAGCAGCAGCAGTAAATCCGTAGGGGTCAGAAGAGGAGTAGGGGCAGC
GGCACTCGGAGCAGCAATAGCAGGAGGAGGGAGGGAGGGAGGGAGAGAGA
GAGGGATGGAGGGAGGGAGGGCAACGCGTACTCTTCACTCCGCCTTTCCT
GCTACACCGACGACAGAGGCCGGTCAAAAAAGGGCGCGAAACGTTTCAGG
AGGGGGGGAGGGAGGAAGGGAGGGAGGGAGGGGGAAGGAAAGATAGGGCT
GGTATGTGTGCTGTGTTGAGAGGAACCGACGGAAGGAGGGAGGGAGGGAG
GGAAGAAGGGAGCGAGGAGAGGACGGAGGAAGGGCGCGAGGAAAGGAAGG
AGAGAGGCGACAAAGGTTAAAAATCGCATTAAATATTTCTTACTTTGGCT
GTGTGCTGTTGTAGCCTCTTTTTGATCTCACTCCGTCCTTCCTTCCCTAC
CTCACTCCTTCCCCTCCCTTACTCCTTCCCCTCCCTCCCTCCTTCCTTAA
TCCTCTCCTTCCTAACCACCTTCTCTCTCTCGTCTCCTCGTTGTGCTCCC
TCCCTCTCTTCCTTTCCCTTCCTTCCCTTCCTCTTCTCCTTGACATGCAG
CAGAGACTTCCCGCGCCTGCTGCACAACGACCTCCCTGTGCATCACACTG
CCCCTCCCTCCCTCCCTCCCTCCCT
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Coding sequence (CDS) from alignment at chr6:61344..64368+

>NO06G00140.2 ID=NO06G00140.2|Name=NO06G00140.2|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr6:61344..64368+ (Nannochloropsis oceanica)
ATGCGTCTCGAACTCTTCTTCAAAACAGCCTCGGAGCTGCAAACTCTTAT
TGCCCTGGTCCAAGGCGCAAACATCGGTGCTGTCAATCTTGTCAACAAGA
GCAAGACAGACCCGTTACTGCAATACGTGCGGACACTCAAGAGCGCCTTC
CCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
GCCCTTGGACATCGTTCCGCATTTCTCTATGAAATATCAACACGTCGGTA
GAGACACCGAGGGGGCCTACGCACACATCAAGTCGTTCTGTACCGATGCC
GCCTCCGAGGGAGTGAGGGAAGTCCTCCTTGTCTCTGGGAGTGGACCCAA
AAGAAAACTCGACCCGGCGGCGTGCCTGGAGCGCCTGTCCAAGGACAAGC
AAGCCCGGGGCTCCTTCCTCTCCTCCCTTCGCTTTGGAGTGGCCTTCAAC
CCGTACCTACCTGAGATGGAAGAGGAGGAGAGCCGTTTTCGAGCCAAAAT
AGCCACGGGCCTGGTGTCTTCAGTGTGGCTGCAGCTCGGGAGCGACACCG
CCGCCCTCAGGAAAGGCCTGGATTTTGTGCGGATCGAAACGGAGGGGAGG
AGTCCGCCCATCCGTGTCATCGGCTCCGTCGTCATCCCCTCCAGAAAGTT
CCTGGCCATGATGAAATTTCGACCCTGGAGCGGTGTGCGTTTAAGTGAGA
CGTATCTCTCGTCAGTGGAGGAAGCGAATAAAGCCACCAAAGCCATTCTC
AATGTCTACAAGGCATACGGAGTGGAGCCTATCGTAGAGAGTGCCGTTAA
AAACGAGGCGGATCTCGAGCAAGTGAAGAATCTGCTCGGCGACTTGTACG
GCTCCTCTCCAACAAGCAGCAGCAGCAGCAGTAAATCCGTAGGGGTCAGA
AGAGGAGTAGGGGCAGCGGCACTCGGAGCAGCAATAGCAGGAGGAGGGAG
GGAGGGAGGGAGAGAGAGAGGGATGGAGGGAGGGAGGGCAACGCGTACTC
TTCACTCCGCCTTTCCTGCTACACCGACGACAGAGGCCGGTCAAAAAAGG
GCGCGAAACGTTTCAGGAGGGGGGGAGGGAGGAAGGGAGGGAGGGAGGGG
GAAGGAAAGATAG
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Synonyms
Publications