NO05G05120.1, NO05G05120.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G05120.1
Unique Name	NO05G05120.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3735
Alignment location	chr5:1338009..1341864 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1338009..1341864 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G05120.1 vs.
Match: EWM21359.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 105.1 bits (261), Expect = 4.800e-19
Identity = 61/141 (43.26%), Postives = 87/141 (61.70%), Query Frame = 0

Query:  129 GITAAFLAAYHDHRSLLALLLAHGADPNKQHKDGLSPLGVAIYRGHLQLVREVLLPHPRLDIDARDDAGGRTALFQAAYWGRTEALQLLLRDTREGGGGADPTVLTKMATCAVQVARIKGHKGCVMLLEEWERTFLLHKLR 270
            G TA ++AA   H + + LLL+ GA+P+ +   G +PLG+A Y GH ++V+ +LL H   D+D RDD  G T L+QAA  GRT+AL+LLL        GADP++  +    A+ VAR K    C+ LLE  ER ++L K+R
Sbjct:   69 GRTALYMAAGRGHVTFVELLLSRGANPSLRRTGGRTPLGIAAYNGHNEVVK-LLLSHEGCDVDGRDDQ-GCTPLWQAARNGRTQALRLLL------AAGADPSIPGEQGWQAIDVAREKDRAECISLLEGEERAYVLSKIR 201

The following BLAST results are available for this feature:

BLAST of NO05G05120.1 vs.

BLAST of NO05G05120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21359.1	4.800e-19	43.26	ankyrin unc44 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G05120	NO05G05120	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G05120.1	NO05G05120.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G05120.1.cds1	NO05G05120.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05120.1.cds2	NO05G05120.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1338009..1341864-
coding sequence from alignment at chr5:1338009..1341864-

mRNA sequence

>NO05G05120.1 ID=NO05G05120.1|Name=NO05G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=3735bp
ATGGTTGGCGCGAACGTATCCCTGCGAGTGGGGGTGTCGGAAGGGGAGGG
AGCGAGAGGAATGAGTGAGGAGGTCGATGATAAGTATCATGCGAAGCTTT
ACGGTGTATGCGCATTCTCCAAGCAGCATCAAGATCGAAATGTCCCTGTG
GATAGCTCGTAAGTCCATATTTAAGCTTGTAAGCATTGAAAAAGGTCGTA
TGAGGCGATGAGCAAGCGGTGCGTCGCAGGAGAGGGAACAAAGAAAGACG
TCGACCTAGGGTGGAGGAGTGGTGGGGATACTATTGATATTACTTCACGA
TGAGACTCTGTCGTTGGATTACAACAGAAACCCCTCGTCCTGCGCAAGCA
ATGCCGTCGCCTCCACCACACGCGTTGCCATCGCATGGGAAAACGAGAAG
TACAGACGGCAAGCTCGCATGTCCTTCTCTGTCCAGATGCTGCTTCTCGT
ACCCGCGCAGCTACGGCCCGCAGAATTACTATATGTGCCGACACTTCATG
CACGACCACGTTGCGTGCCTGCGTCTAGATCGTCCAATCAGTAAGGCTCA
CACAACCTACAACCTAGGGCAAAAAATGGATGTTTTCTTGCCTCCTCCAT
TTATGTACCACCACCACTCTTAAGTAGGGAAAAGTTGGGCTCTCCAGGTG
TCAAGAGTCGCCAACAGCACATACCCCGTATGTGATTTGTTCTTTCTTCT
TTCATTGATTGGGCAGAAGAAAGAATAGTTTGAGGACTCAAGCGAGAACA
ATTTACTCGTATGGGGTATGCTGTGCCGCATGCGGCAGGTCCGCCGTAAA
TTGTAGTCGGACGCTCACGTCTGAATCACCCCCTCTCAAACGATGCGTTA
CTACTGGTATTTCTCGCTCTGCCATTGCGCCGTCACTTTCTGCAGAATTA
AAAAATGTTGTAGCTTTCGCTAACGGTGTGTGTAGCAGGCGCACCTCTAG
GAGTACTCCTTTGCTCCGTATGGCTGAAATGAAATATCTTTCCATACATT
TCCACTTCTGGTCCCTGGCACGCGCGTTAGAAAACAAACGACGCCGGTAA
CGCTGGGTGGTCCCTCAAAAGGCGGCCCACCTGCTGGCTCAGTATCATCT
TCACCCTCCTCCTCAATCCACGCCGCGCAGCCCCCCATTCTCCCATCACG
TGCGCACTCCAATGCATGGTGCGATCGGGATCCCTAATATGATCTCATAT
CTCAGCCGTCCCCATTGGCTTACAACATCAGTTATTTCTGGGCATCCCTG
ACGTAGTCATCCAACCACCCCCAACGGTAGGTGTCGCCGGGAGCGCCAGA
CCCGCTGCCACTGTGTTCAAAGCATATGCCCAACCGGACCATTCGCAGAT
GGACTTCTGCCCATCCATTTACCTGCTAGAAAGCCCGTAGTCTTGGGTCA
GTAACCGAGCCTCACAGCTGCTTACAAATCGGCTGCCACAAAATGTCATT
ACGAGGGATGACATGCGCCTTGCGGCTTAGCAAGTCAAAGGCTCCCAGTT
TGGCCCACTGATACTATCCGTCGATCAAGCCTGTTTTCGGGAATCAAGAA
TGTTAGCACGTTTACCAGTAATGTAGAGGGGAGATCTTTGAGAAGGCAGA
GGGGTGGACGAGTCGCGTTCGTTTGCACAGGGGAAAGGTGAGAATGTGCC
GTCGCAGCAGAGGATGCAAACCAGGATCCGAGGCATGCGTGCAGTAATTC
TATTGCTGGTGGAACAAGATACTATCATGGCCGCTGCTGGCACCGGGAAT
GGCAGACAATGACGTTGATGCCGCTGGTGGCGGTGGGTGTATCTCCCACA
AATTATTGTCTTAAGACATGGATTGGAAAAGCACTGCGACTCCCTTGCTC
GGGGTTGTCCATGCTGTTTAATGTGAAAGGTATATGAATAGCCCAAGATG
CCTCATCATAGTAAGTAGACAAGCGTGTGACAGAGCTGGGTCGTGCTGGC
GCGGATCGAAGCGATGTCCTGTTGCTACTGCTCCATCGAGGTGTTGATTA
GGGACAACACCTGTACAAACGTAGTGGTGGACACGCCGGGATTGATCATT
CTATCTGTAGATAGTGGTGTATGTGTGTATGGTGGTAGGAAGAGATGGTG
TCCAAGCCGGTTTTCCGAGCCTGCGTGAAGAACTTGAAGCGAGCTGCAAC
CTCCTCCTCACGACATCCGAGTCACTAAACCGCATTAAATCCACACGTTT
TATGCACCTTCCCTACATTTACATCCCCAAAGGTAAAATATCTGTTGATA
AGATCAGGAGTCTGTCGAGCCATCGTAGCTGTGCTCTCCAAAACAGTCGA
CGTCTTTCACATCCTCCTCCCTCCAGCACGCAGGCATGCACCTCGGCAAA
GGCATTATGCGAGCCCTTTTCATCCACAGACCGTCTCCACCACCGACACT
CTCCGATGCAGACCATGATCGCCTAGTTCAGGCGGCTTACAAGGGAGATT
TGCCGCAGCTACGGCATCTGGCTCAAGAGAAGCCGAGCTTTGCGCATGCC
ATGTATAGTGCCATCGTCCACGAGGACGGCTGGAATGTCTTGATGCTTTC
GACGCTCTTTTGCCACATGGAGGTGATTAAATGGCTGATAACCGGATGTG
CAAGCAAGGAGAATGATGAAGAGACAGAGGAAGCGGCTGGAAATGAGGCA
GAGGAAGCTAGCACTGACGTCGCCGTAGCACATCAGATCTCGCAAATGAT
CAACCAACAAGATCGAGAAGGCATCACAGCCGCTTTCTTGGCGGCTTATC
ACGACCATCGGTCCCTCCTAGCCTTACTTCTGGCTCATGGCGCGGACCCC
AATAAGCAGCACAAGGACGGGCTTTCCCCTTTGGGCGTGGCTATCTATCG
TGGGCACTTACAGCTGGTCCGTGAGGTCTTGCTACCGCATCCAAGACTTG
ATATCGATGCCCGGGACGACGCCGGCGGACGCACAGCATTGTTTCAAGCG
GCGTACTGGGGGAGAACTGAGGCGTTGCAGTTGTTACTTCGGGACACGAG
AGAGGGTGGTGGAGGGGCTGACCCGACGGTTTTGACGAAAATGGCCACTT
GCGCTGTGCAGGTAGCGCGGATCAAGGGACATAAGGGGTGTGTGATGTTG
CTCGAGGAATGGGAGAGAACCTTCTTGTTGCACAAGCTACGCGGTATTCA
TGACGCCGCCTTGGCGAGGGAAGTGTCAACAGCTGCCTACTCCTCATTTT
CGGCGTTGGCAACAATAGCGGGATCATTGCCGTCGCCATCGTTTACACTT
AGTGGAACAGCAAGTGGAAATGCTTCAGAAGGAGCCATCCCCCGGCTGCA
GATGCACATGGTTGGGGACGAGACCAAAGGCCTGCTGGAGGTGAAGAGAG
ACACAAATACGGGCATGAATTATGCTTTCACGGCCCTCGTATTGGGGATG
GTGGTAGCGGAGCTCAAAGGCGATCTATTCGGAGAATTGCAGGAGTACAT
GGGCCGCACATGCGGTTGGATTGAGGAGTGAATAAGTTAGGTGGATCGTC
CTGAGGCAGGGAAAGAGTTGTACAGAATGAATCCGTTGGCTTCTGTCTTA
TCCTTTTTGCTTGAATTTGTGGGCTGTATGACAACCACAAGGAATGGAAA
TAATAAAGTTTGAGAAGAGGTATAGCACTGTTTGGTGCTTCTCTGAGGGG
GGAGGATTTTTCTCTTTACTGACCTTGCTAGAAATTAACTTCTTACCGAA
AGTCAGATTGTTAAAGCAAAATGGCGTACATTCAC

protein sequence of NO05G05120.1

>NO05G05120.1-protein ID=NO05G05120.1-protein|Name=NO05G05120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MHLGKGIMRALFIHRPSPPPTLSDADHDRLVQAAYKGDLPQLRHLAQEKP
SFAHAMYSAIVHEDGWNVLMLSTLFCHMEVIKWLITGCASKENDEETEEA
AGNEAEEASTDVAVAHQISQMINQQDREGITAAFLAAYHDHRSLLALLLA
HGADPNKQHKDGLSPLGVAIYRGHLQLVREVLLPHPRLDIDARDDAGGRT
ALFQAAYWGRTEALQLLLRDTREGGGGADPTVLTKMATCAVQVARIKGHK
GCVMLLEEWERTFLLHKLRGIHDAALAREVSTAAYSSFSALATIAGSLPS
PSFTLSGTASGNASEGAIPRLQMHMVGDETKGLLEVKRDTNTGMNYAFTA
LVLGMVVAELKGDLFGELQEYMGRTCGWIEE*

mRNA from alignment at chr5:1338009..1341864-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G05120.1 ID=NO05G05120.1|Name=NO05G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=3856bp|location=Sequence derived from alignment at chr5:1338009..1341864- (Nannochloropsis oceanica)
ATGGTTGGCGCGAACGTATCCCTGCGAGTGGGGGTGTCGGAAGGGGAGGG
AGCGAGAGGAATGAGTGAGGAGGTCGATGATAAGTATCATGCGAAGCTTT
ACGGTGTATGCGCATTCTCCAAGCAGCATCAAGATCGAAATGTCCCTGTG
GATAGCTCGTAAGTCCATATTTAAGCTTGTAAGCATTGAAAAAGGTCGTA
TGAGGCGATGAGCAAGCGGTGCGTCGCAGGAGAGGGAACAAAGAAAGACG
TCGACCTAGGGTGGAGGAGTGGTGGGGATACTATTGATATTACTTCACGA
TGAGACTCTGTCGTTGGATTACAACAGAAACCCCTCGTCCTGCGCAAGCA
ATGCCGTCGCCTCCACCACACGCGTTGCCATCGCATGGGAAAACGAGAAG
TACAGACGGCAAGCTCGCATGTCCTTCTCTGTCCAGATGCTGCTTCTCGT
ACCCGCGCAGCTACGGCCCGCAGAATTACTATATGTGCCGACACTTCATG
CACGACCACGTTGCGTGCCTGCGTCTAGATCGTCCAATCAGTAAGGCTCA
CACAACCTACAACCTAGGGCAAAAAATGGATGTTTTCTTGCCTCCTCCAT
TTATGTACCACCACCACTCTTAAGTAGGGAAAAGTTGGGCTCTCCAGGTG
TCAAGAGTCGCCAACAGCACATACCCCGTATGTGATTTGTTCTTTCTTCT
TTCATTGATTGGGCAGAAGAAAGAATAGTTTGAGGACTCAAGCGAGAACA
ATTTACTCGTATGGGGTATGCTGTGCCGCATGCGGCAGGTCCGCCGTAAA
TTGTAGTCGGACGCTCACGTCTGAATCACCCCCTCTCAAACGATGCGTTA
CTACTGGTATTTCTCGCTCTGCCATTGCGCCGTCACTTTCTGCAGAATTA
AAAAATGTTGTAGCTTTCGCTAACGGTGTGTGTAGCAGGCGCACCTCTAG
GAGTACTCCTTTGCTCCGTATGGCTGAAATGAAATATCTTTCCATACATT
TCCACTTCTGGTCCCTGGCACGCGCGTTAGAAAACAAACGACGCCGGTAA
CGCTGGGTGGTCCCTCAAAAGGCGGCCCACCTGCTGGCTCAGTATCATCT
TCACCCTCCTCCTCAATCCACGCCGCGCAGCCCCCCATTCTCCCATCACG
TGCGCACTCCAATGCATGGTGCGATCGGGATCCCTAATATGATCTCATAT
CTCAGCCGTCCCCATTGGCTTACAACATCAGTTATTTCTGGGCATCCCTG
ACGTAGTCATCCAACCACCCCCAACGGTAGGTGTCGCCGGGAGCGCCAGA
CCCGCTGCCACTGTGTTCAAAGCATATGCCCAACCGGACCATTCGCAGAT
GGACTTCTGCCCATCCATTTACCTGCTAGAAAGCCCGTAGTCTTGGGTCA
GTAACCGAGCCTCACAGCTGCTTACAAATCGGCTGCCACAAAATGTCATT
ACGAGGGATGACATGCGCCTTGCGGCTTAGCAAGTCAAAGGCTCCCAGTT
TGGCCCACTGATACTATCCGTCGATCAAGCCTGTTTTCGGGAATCAAGAA
TGTTAGCACGTTTACCAGTAATGTAGAGGGGAGATCTTTGAGAAGGCAGA
GGGGTGGACGAGTCGCGTTCGTTTGCACAGGGGAAAGGTGAGAATGTGCC
GTCGCAGCAGAGGATGCAAACCAGGATCCGAGGCATGCGTGCAGTAATTC
TATTGCTGGTGGAACAAGATACTATCATGGCCGCTGCTGGCACCGGGAAT
GGCAGACAATGACGTTGATGCCGCTGGTGGCGGTGGGTGTATCTCCCACA
AATTATTGTCTTAAGACATGGATTGGAAAAGCACTGCGACTCCCTTGCTC
GGGGTTGTCCATGCTGTTTAATGTGAAAGGTATATGAATAGCCCAAGATG
CCTCATCATAGTAAGTAGACAAGCGTGTGACAGAGCTGGGTCGTGCTGGC
GCGGATCGAAGCGATGTCCTGTTGCTACTGCTCCATCGAGGTGTTGATTA
GGGACAACACCTGTACAAACGTAGTGGTGGACACGCCGGGATTGATCATT
CTATCTGTAGATAGTGGTGTATGTGTGTATGGTGGTAGGAAGAGATGGTG
TCCAAGCCGGTTTTCCGAGCCTGCGTGAAGAACTTGAAGCGAGCTGCAAC
CTCCTCCTCACGACATCCGAGTCACTAAACCGCATTAAATCCACACGTTT
TATGCACCTTCCCTACATTTACATCCCCAAAGGTAAAATATCTGTTGATA
AGATCAGGAGTCTGTCGAGCCATCGTAGCTGTGCTCTCCAAAACAGTCGA
CGTCTTTCACATCCTCCTCCCTCCAGCACGCAGGCATGCACCTCGGCAAA
GGCATTATGCGAGCCCTTTTCATCCACAGACCGTCTCCACCACCGACACT
CTCCGATGCAGACCATGATCGCCTAGTTCAGGCGGCTTACAAGGGAGATT
TGCCGCAGCTACGGCATCTGGCTCAAGAGAAGCCGAGCTTTGCGCATGCC
ATGTATAGTGCCATCGTCCACGAGGACGGCTGGAATGTCTTGATGCTTTC
GACGCTCTTTTGCCACATGGAGGTGATTAAATGGCTGATAACCGGATGTG
CAAGCAAGGAGAATGATGAAGAGACAGAGGAAGCGGCTGGAAATGAGGCA
GAGGAAGCTAGCACTGACGTCGCCGTAGCACATCAGATCTCGCAAATGAT
CAACCAACAAGATCGAGAAGGCATCACAGCCGCTTTCTTGGCGGCTTATC
ACGACCATCGGTCCCTCCTAGCCTTACTTCTGGCTCATGGCGCGGACCCC
AATAAGCAGCACAAGGACGGGCTTTCCCCTTTGGGCGTGGCTATCTATCG
TGGGCACTTACAGCTGGTCCGTGAGGTCTTGCTACCGCATCCAAGACTTG
ATATCGATGCCCGGGACGACGCCGGCGGACGCACAGCATTGTTTCAAGCG
GCGTACTGGGGGAGAACTGAGGCGTTGCAGTTGTTACTTCGGGACACGAG
AGAGGGTGGTGGAGGGGCTGACCCGACGGTTTTGACGAAAATGGCCACTT
GCGCTGTGCAGGTAGCGCGGATCAAGGGACATAAGGGGTGTGTGATGTTG
CTCGAGGTAAGACGACAAGAAAAATACTGAGGAAGGAGGATAGGATGGTG
AACAATGACGGCAGATAACGAGGGAGGGGGGGCGACGTGAATTCTGACCC
AACGGCGTTTCCCCTTCGAACATACAGGAATGGGAGAGAACCTTCTTGTT
GCACAAGCTACGCGGTATTCATGACGCCGCCTTGGCGAGGGAAGTGTCAA
CAGCTGCCTACTCCTCATTTTCGGCGTTGGCAACAATAGCGGGATCATTG
CCGTCGCCATCGTTTACACTTAGTGGAACAGCAAGTGGAAATGCTTCAGA
AGGAGCCATCCCCCGGCTGCAGATGCACATGGTTGGGGACGAGACCAAAG
GCCTGCTGGAGGTGAAGAGAGACACAAATACGGGCATGAATTATGCTTTC
ACGGCCCTCGTATTGGGGATGGTGGTAGCGGAGCTCAAAGGCGATCTATT
CGGAGAATTGCAGGAGTACATGGGCCGCACATGCGGTTGGATTGAGGAGT
GAATAAGTTAGGTGGATCGTCCTGAGGCAGGGAAAGAGTTGTACAGAATG
AATCCGTTGGCTTCTGTCTTATCCTTTTTGCTTGAATTTGTGGGCTGTAT
GACAACCACAAGGAATGGAAATAATAAAGTTTGAGAAGAGGTATAGCACT
GTTTGGTGCTTCTCTGAGGGGGGAGGATTTTTCTCTTTACTGACCTTGCT
AGAAATTAACTTCTTACCGAAAGTCAGATTGTTAAAGCAAAATGGCGTAC
ATTCAC

Coding sequence (CDS) from alignment at chr5:1338009..1341864-

>NO05G05120.1 ID=NO05G05120.1|Name=NO05G05120.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr5:1338009..1341864- (Nannochloropsis oceanica)
ATGCACCTCGGCAAAGGCATTATGCGAGCCCTTTTCATCCACAGACCGTC
TCCACCACCGACACTCTCCGATGCAGACCATGATCGCCTAGTTCAGGCGG
CTTACAAGGGAGATTTGCCGCAGCTACGGCATCTGGCTCAAGAGAAGCCG
AGCTTTGCGCATGCCATGTATAGTGCCATCGTCCACGAGGACGGCTGGAA
TGTCTTGATGCTTTCGACGCTCTTTTGCCACATGGAGGTGATTAAATGGC
TGATAACCGGATGTGCAAGCAAGGAGAATGATGAAGAGACAGAGGAAGCG
GCTGGAAATGAGGCAGAGGAAGCTAGCACTGACGTCGCCGTAGCACATCA
GATCTCGCAAATGATCAACCAACAAGATCGAGAAGGCATCACAGCCGCTT
TCTTGGCGGCTTATCACGACCATCGGTCCCTCCTAGCCTTACTTCTGGCT
CATGGCGCGGACCCCAATAAGCAGCACAAGGACGGGCTTTCCCCTTTGGG
CGTGGCTATCTATCGTGGGCACTTACAGCTGGTCCGTGAGGTCTTGCTAC
CGCATCCAAGACTTGATATCGATGCCCGGGACGACGCCGGCGGACGCACA
GCATTGTTTCAAGCGGCGTACTGGGGGAGAACTGAGGCGTTGCAGTTGTT
ACTTCGGGACACGAGAGAGGGTGGTGGAGGGGCTGACCCGACGGTTTTGA
CGAAAATGGCCACTTGCGCTGTGCAGGTAGCGCGGATCAAGGGACATAAG
GGGTGTGTGATGTTGCTCGAGGAATGGGAGAGAACCTTCTTGTTGCACAA
GCTACGCGGTATTCATGACGCCGCCTTGGCGAGGGAAGTGTCAACAGCTG
CCTACTCCTCATTTTCGGCGTTGGCAACAATAGCGGGATCATTGCCGTCG
CCATCGTTTACACTTAGTGGAACAGCAAGTGGAAATGCTTCAGAAGGAGC
CATCCCCCGGCTGCAGATGCACATGGTTGGGGACGAGACCAAAGGCCTGC
TGGAGGTGAAGAGAGACACAAATACGGGCATGAATTATGCTTTCACGGCC
CTCGTATTGGGGATGGTGGTAGCGGAGCTCAAAGGCGATCTATTCGGAGA
ATTGCAGGAGTACATGGGCCGCACATGCGGTTGGATTGAGGAGTGA

Synonyms

Publications