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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:982337..985528 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03760.1 vs.
Match: EWM27954.1 (glycosyl group 1 [Nannochloropsis gaditana]) HSP 1 Score: 792.3 bits (2045), Expect = 1.000e-225 Identity = 392/516 (75.97%), Postives = 438/516 (84.88%), Query Frame = 0
Query: 1 MPCGDHAPRLPNEDLEEAAGHYSEESYDARRDKHHHYLTQYQLQQQLPQQGSTSSRTSSVSSCSTALLADTDHICLEAEASEEEGSSGGDRFESGAAPRVVIFTAAYYVCDGVSLTIRKLRGHLQSKGIASRVVSCGPAGWSEPDVFTVPSIPLPIINADDNFGYSLGLKLTERCKAQIKSFKPSVIHFTVPDFLALDALRWAKAEHIPVMGTWHSNYSDYLKFYHLNIIRLPVERYIRSFYVNMPIYVPTPFIRKRLLDSGFPTERVGIWGRGVDFNMFKPSNRSMAFRRERGIEDDEVVILWVGRLVKEKSPDIWAEVIRRLEREGLRFRALVVGSGSWEENMKKLPRTEHLGWLSGEALARVYASVDVFLFPSEVETFGNVTLEALASGVPCVASAGCSGHLVSHGINGFVVGKADVEEYYMLTRRLVVDKGLRERFAAKARGSIKELEHDRVMDMMVTNYEGVMHAYHQVGGDGCASRSNGWGDVWIAMIFHFFSFLLWLGTPLMKGYVAVA 517
MP GD PRLP+EDLEEA YSEE+YDA R KH ++ Q+ Q G +SS TSSV+ CST + DTD EEGS G +G APRVVIFTAAYYVCDGVSLTIRKLR HLQS+GIASRVVSCGPAGWSE DVFTVPSIPLPIINADDNFGYSLG++LT CKAQIK+F PSVIHFTVPDFLALDALRWAKAE IPVMGTWHSNY+DYL+FYHL++IRLPVER+IRSFYVNMPIYVPTPF+RKRL+DSGFP RV +WGRGVD MF P+ RSMAFRR RGI DDEVVILWVGRLVKEKSPDIWAEVIRRL++EGL+FRALVVGSGS+EE+MK+LPRTEHLGW+SG ALA VYASVD+FLFPSEVETFGNVTLEALASGVPC+ASAGCSGHLV HG+NGFV+ +ADV+EY+ LTR LVV+ LR RFA KARGSI LEHDRVMDMMV NYEGV+ AYH+ GG+GC SR GWGDV+I +++HFFSFL+ LGTPLMK YVA+A
Sbjct: 1 MPSGDQVPRLPHEDLEEAVVQYSEEAYDANRHKHENFDVQHP---QWYPPGPSSSSTSSVT-CSTTPVLDTD----------EEGSGG--TLGTGGAPRVVIFTAAYYVCDGVSLTIRKLRAHLQSRGIASRVVSCGPAGWSETDVFTVPSIPLPIINADDNFGYSLGIRLTPECKAQIKAFNPSVIHFTVPDFLALDALRWAKAERIPVMGTWHSNYADYLQFYHLSVIRLPVERFIRSFYVNMPIYVPTPFVRKRLVDSGFPENRVSLWGRGVDLKMFNPNFRSMAFRRGRGIADDEVVILWVGRLVKEKSPDIWAEVIRRLDQEGLKFRALVVGSGSYEEHMKQLPRTEHLGWMSGAALAEVYASVDLFLFPSEVETFGNVTLEALASGVPCIASAGCSGHLVHHGVNGFVISRADVDEYHSLTRELVVNGPLRARFAEKARGSIVSLEHDRVMDMMVANYEGVVQAYHRPGGEGCNSRRGGWGDVYIMLVYHFFSFLMMLGTPLMKAYVAIA 500
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03760.1 ID=NO05G03760.1|Name=NO05G03760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2879bp
CCTCTGTGTCTGTTTCGACTTCTCTACTCCTCTTCTTCTTCTTTTCTGGT
GGCCCTCGAGACATCACAACTACTTACCTTACAGGGAATTTCTTCGCTCA
CGAATATTATGAAGGAGGATTGCTTCGTCTACGAAAAAAATATCTCAATA
CGCTCTAATTAGCAGAGTCACACCAAGAGCCAGGGCTTGTGGAAACTCGG
TATGTGTACCTACCTGCCTATCTGTACTGAGGAGTGGCCCATGAAACCAA
ATACTGGCCGTAATATGAAGAGGCCATCGAGTGCCTCGTACAGCCAATGG
AAGTATGGTATTATTCAAAATTATAAATTTTCTTATGACTAGTGTTGAGT
GAAGGAGGGGATGACCTTACTTGGCCACATATCGAGTGATTTCACGCTCT
TGCAGAGAAAGAAGGAAAAGGAGAGTCAGTCGTGCCGTTGAGAGTGAGTT
CCGCCGGGGCGCGAGCGAGTCAGGGAACGAATTTCAGCTTCTGCTGACAT
CCCCAAAAAAAATCGCATCACACAAGGCTGGTACGTAAGGATTGCCAGGC
TTGTGTGAAATACTTGGTGTGAAAGATGGACGATAAGCGCTTTGTTTGGG
GACGGCATCCGTCCCGATGATCCTCGCTCGCATCTTCCGATGTTCCAAGT
GGGCAGCAACGTTGTAACTTTGGATCATCATTTATTTTTCTTTGTCGGAA
GATGCTGGTCCCCCAGGCCACCACGCGCTCTGAGCCTCCGTCCATTTGTC
ACTACACTTACGCACACAGGAAGCTTCGGGTTCTGACGGCCAGAGGAACT
GGGTCATGGCGGCAAAGACAAGCCAATAGCGGTAGCAAGGAAGACGGGAC
TCGGACAAGCAAGCACACGTAGGCGTCGTGAATAGCTTGGGCACGCCGCG
CACACCACTCGAGCCCTTAAGGAAAGCAGGAATATTATACTCAGCAGCAA
CAGCAAGCCGGGAGCGGGCCGCAGGGAAAGGAAGAATTTGCTATAGGGTA
GAAAGGCGGATAGATCGGGAACTGGAAATCATGCCATGCGGCGACCATGC
CCCACGACTGCCGAATGAGGACCTAGAGGAGGCAGCCGGTCACTACTCGG
AGGAATCTTACGACGCCCGTCGGGACAAGCACCATCACTACCTTACCCAA
TACCAGCTACAACAACAACTGCCCCAACAAGGGTCCACTAGCAGCCGTAC
CAGCAGTGTTAGCAGCTGCTCCACAGCGCTTCTCGCCGACACGGACCACA
TCTGTCTTGAAGCAGAAGCAAGCGAGGAGGAAGGATCCAGCGGTGGGGAC
AGGTTTGAGAGCGGAGCGGCACCGCGGGTGGTGATTTTTACCGCTGCTTA
TTACGTGTGTGATGGCGTGAGTCTCACAATACGGAAACTCCGGGGGCACC
TTCAATCGAAAGGGATCGCATCTCGCGTCGTATCGTGTGGGCCTGCGGGC
TGGAGCGAACCAGATGTATTTACGGTCCCTTCAATTCCGTTGCCGATTAT
TAATGCAGATGATAACTTTGGGTATTCTCTAGGGCTCAAACTGACGGAAC
GTTGCAAGGCGCAGATCAAGAGTTTTAAGCCTTCGGTCATTCACTTCACT
GTGCCGGATTTTTTGGCTTTGGATGCCCTGAGGTGGGCGAAGGCGGAGCA
TATCCCAGTGATGGGCACATGGCACAGCAATTATTCCGATTATCTGAAGT
TTTATCATTTGAATATAATTCGATTGCCCGTGGAGAGGTACATTAGGTCG
TTTTACGTTAACATGCCCATCTACGTTCCCACGCCGTTTATTCGCAAGCG
GTTGTTGGATAGTGGGTTTCCGACAGAACGAGTGGGGATATGGGGGAGGG
GGGTCGATTTCAATATGTTCAAGCCGTCGAATCGATCGATGGCATTCAGG
CGGGAGAGGGGGATTGAGGATGATGAGGTCGTCATATTGTGGGTGGGGCG
TCTGGTTAAGGAAAAGAGTCCTGATATATGGGCGGAGGTAATACGGAGAT
TGGAAAGAGAGGGGTTAAGATTTCGAGCTCTGGTGGTGGGGAGCGGGAGT
TGGGAGGAGAATATGAAAAAATTGCCAAGGACAGAGCATTTGGGGTGGTT
GAGTGGGGAGGCGTTGGCGCGGGTGTATGCGAGTGTGGACGTGTTTTTAT
TCCCGAGCGAGGTGGAGACGTTTGGTAATGTCACGTTGGAGGCCTTGGCA
AGCGGCGTGCCGTGTGTGGCGTCAGCGGGATGCAGTGGACATCTGGTAAG
TCATGGGATCAATGGTTTTGTGGTGGGAAAGGCGGATGTGGAGGAGTATT
ATATGTTGACGAGGCGTTTGGTGGTGGACAAGGGATTGAGGGAGCGATTT
GCGGCGAAAGCAAGGGGCAGCATCAAGGAACTGGAGCATGATAGAGTGAT
GGATATGATGGTCACGAATTATGAGGGGGTAATGCATGCTTATCATCAGG
TTGGGGGGGACGGCTGCGCGAGTCGGAGTAATGGCTGGGGGGATGTCTGG
ATAGCGATGATATTTCACTTTTTTTCGTTTTTACTTTGGTTGGGGACACC
GTTGATGAAGGGATATGTGGCTGTCGCGAGTGGGGTGGGGGCATGCTGGA
GGCGGCCGTTTTGGGGGGGATTGCCGGATCGGATGCTGATGGGCTTTGCA
CGGTGTTTTTCTTGTTTGATACGACGGCAGCAGCTGCAGCTGCCTCGAGT
AGGGGGGGGAAGGGGAGGTGGAGAAAGGGAAGGAGGGAGGCCGGTATTTC
GAGAGCGGGTGAAGATGTTGGCGATCTGTGTGTGGTTGTCTGCAATTGTG
ATAGTATATCACACGTATACGAGCATGGACTGGAAAGCAACGGTTGGAGG
TTGGGGAGGGGAGGAGAGGTAGGAGGAGG back to topprotein sequence of NO05G03760.1 >NO05G03760.1-protein ID=NO05G03760.1-protein|Name=NO05G03760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp
MPCGDHAPRLPNEDLEEAAGHYSEESYDARRDKHHHYLTQYQLQQQLPQQ
GSTSSRTSSVSSCSTALLADTDHICLEAEASEEEGSSGGDRFESGAAPRV
VIFTAAYYVCDGVSLTIRKLRGHLQSKGIASRVVSCGPAGWSEPDVFTVP
SIPLPIINADDNFGYSLGLKLTERCKAQIKSFKPSVIHFTVPDFLALDAL
RWAKAEHIPVMGTWHSNYSDYLKFYHLNIIRLPVERYIRSFYVNMPIYVP
TPFIRKRLLDSGFPTERVGIWGRGVDFNMFKPSNRSMAFRRERGIEDDEV
VILWVGRLVKEKSPDIWAEVIRRLEREGLRFRALVVGSGSWEENMKKLPR
TEHLGWLSGEALARVYASVDVFLFPSEVETFGNVTLEALASGVPCVASAG
CSGHLVSHGINGFVVGKADVEEYYMLTRRLVVDKGLRERFAAKARGSIKE
LEHDRVMDMMVTNYEGVMHAYHQVGGDGCASRSNGWGDVWIAMIFHFFSF
LLWLGTPLMKGYVAVASGVGACWRRPFWGGLPDRMLMGFARCFSCLIRRQ
QLQLPRVGGGRGGGEREGGRPVFRERVKMLAICVWLSAIVIVYHTYTSMD
WKATVGGWGGEER* back to topmRNA from alignment at chr5:982337..985528+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03760.1 ID=NO05G03760.1|Name=NO05G03760.1|organism=Nannochloropsis oceanica|type=mRNA|length=3192bp|location=Sequence derived from alignment at chr5:982337..985528+ (Nannochloropsis oceanica)
CCTCTGTGTCTGTTTCGACTTCTCTACTCCTCTTCTTCTTCTTTTCTGGT
GGCCCTCGAGACATCACAACTACTTACCTTACAGGGAATTTCTTCGCTCA
CGAATATTATGAAGGAGGATTGCTTCGTCTACGAAAAAAATATCTCAATA
CGCTCTAATTAGCAGAGTCACACCAAGAGCCAGGGCTTGTGGAAACTCGG
TATGTGTACCTACCTGCCTATCTGTACTGAGGAGTGGCCCATGAAACCAA
ATACTGGCCGTAATATGAAGAGGCCATCGAGTGCCTCGTACAGCCAATGG
AAGTATGGTATTATTCAAAATTATAAATTTTCTTATGACTAGTGTTGAGT
GAAGGAGGGGATGACCTTACTTGGCCACATATCGAGTGATTTCACGCTCT
TGCAGAGAAAGAAGGAAAAGGAGAGTCAGTCGTGCCGTTGAGAGTGAGTT
CCGCCGGGGCGCGAGCGAGTCAGGGAACGAATTTCAGCTTCTGCTGACAT
CCCCAAAAAAAATCGCATCACACAAGGCTGGTACGTAAGGATTGCCAGGC
TTGTGTGAAATACTTGGTGTGAAAGATGGACGATAAGCGCTTTGTTTGGG
GACGGCATCCGTCCCGATGATCCTCGCTCGCATCTTCCGATGTTCCAAGT
GGGCAGCAACGTTGTAACTTTGGATCATCATTTATTTTTCTTTGTCGGAA
GATGCTGGTCCCCCAGGCCACCACGCGCTCTGAGCCTCCGTCCATTTGTC
ACTACACTTACGCACACAGGAAGCTTCGGGTTCTGACGGCCAGAGGAACT
GGGTCATGGCGGCAAAGACAAGCCAATAGCGGTAGCAAGGAAGACGGGAC
TCGGACAAGCAAGCACACGTAGGCGTCGTGAATAGCTTGGGCACGCCGCG
CACACCACTCGAGCCCTTAAGGAAAGCAGGAATATTATACTCAGCAGCAA
CAGCAAGCCGGGAGCGGGCCGCAGGGAAAGGAAGAATTTGCTATAGGGTA
GAAAGGCGGATAGATCGGGAACTGGAAATCATGCCATGCGGCGACCATGC
CCCACGACTGCCGAATGAGGTAAGCGAAGCAAATTGGTGGAGATATGGCA
AGATTGGGCAGTGTTTTTTGGTCCATATGTATGTGAGGATGAAGGGGGGA
GAGAAACATGATCGCATCTGCCGACCGAAACTGGAGTCTGAGGCGTGGTC
ATCGGGACCTGAGGAACGGGGCTGTACGGAGCCCTCAAAAGCAGCCCAGC
CCGGCATTGCGGTCACACGTGCAAATATTGATGCCCTCGCAACTGGCTCG
CGAATCTCTTTGTCGTGCGACTCGTCCACTCACTTGCCTATCTTCCCGTT
CCTACCTCCCCCCTCCCTCTCCCCTCCAAAAGGACCTAGAGGAGGCAGCC
GGTCACTACTCGGAGGAATCTTACGACGCCCGTCGGGACAAGCACCATCA
CTACCTTACCCAATACCAGCTACAACAACAACTGCCCCAACAAGGGTCCA
CTAGCAGCCGTACCAGCAGTGTTAGCAGCTGCTCCACAGCGCTTCTCGCC
GACACGGACCACATCTGTCTTGAAGCAGAAGCAAGCGAGGAGGAAGGATC
CAGCGGTGGGGACAGGTTTGAGAGCGGAGCGGCACCGCGGGTGGTGATTT
TTACCGCTGCTTATTACGTGTGTGATGGCGTGAGTCTCACAATACGGAAA
CTCCGGGGGCACCTTCAATCGAAAGGGATCGCATCTCGCGTCGTATCGTG
TGGGCCTGCGGGCTGGAGCGAACCAGATGTATTTACGGTCCCTTCAATTC
CGTTGCCGATTATTAATGCAGATGATAACTTTGGGTATTCTCTAGGGCTC
AAACTGACGGAACGTTGCAAGGCGCAGATCAAGAGTTTTAAGCCTTCGGT
CATTCACTTCACTGTGCCGGATTTTTTGGCTTTGGATGCCCTGAGGTGGG
CGAAGGCGGAGCATATCCCAGTGATGGGCACATGGCACAGCAATTATTCC
GATTATCTGAAGTTTTATCATTTGAATATAATTCGATTGCCCGTGGAGAG
GTACATTAGGTCGTTTTACGTTAACATGCCCATCTACGTTCCCACGCCGT
TTATTCGCAAGCGGTTGTTGGATAGTGGGTTTCCGACAGAACGAGTGGGG
ATATGGGGGAGGGGGGTCGATTTCAATATGTTCAAGCCGTCGAATCGATC
GATGGCATTCAGGCGGGAGAGGGGGATTGAGGATGATGAGGTCGTCATAT
TGTGGGTGGGGCGTCTGGTTAAGGAAAAGAGTCCTGATATATGGGCGGAG
GTAATACGGAGATTGGAAAGAGAGGGGTTAAGATTTCGAGCTCTGGTGGT
GGGGAGCGGGAGTTGGGAGGAGAATATGAAAAAATTGCCAAGGACAGAGC
ATTTGGGGTGGTTGAGTGGGGAGGCGTTGGCGCGGGTGTATGCGAGTGTG
GACGTGTTTTTATTCCCGAGCGAGGTGGAGACGTTTGGTAATGTCACGTT
GGAGGCCTTGGCAAGCGGCGTGCCGTGTGTGGCGTCAGCGGGATGCAGTG
GACATCTGGTAAGTCATGGGATCAATGGTTTTGTGGTGGGAAAGGCGGAT
GTGGAGGAGTATTATATGTTGACGAGGCGTTTGGTGGTGGACAAGGGATT
GAGGGAGCGATTTGCGGCGAAAGCAAGGGGCAGCATCAAGGAACTGGAGC
ATGATAGAGTGATGGATATGATGGTCACGAATTATGAGGGGGTAATGCAT
GCTTATCATCAGGTTGGGGGGGACGGCTGCGCGAGTCGGAGTAATGGCTG
GGGGGATGTCTGGATAGCGATGATATTTCACTTTTTTTCGTTTTTACTTT
GGTTGGGGACACCGTTGATGAAGGGATATGTGGCTGTCGCGAGTGGGGTG
GGGGCATGCTGGAGGCGGCCGTTTTGGGGGGGATTGCCGGATCGGATGCT
GATGGGCTTTGCACGGTGTTTTTCTTGTTTGATACGACGGCAGCAGCTGC
AGCTGCCTCGAGTAGGGGGGGGAAGGGGAGGTGGAGAAAGGGAAGGAGGG
AGGCCGGTATTTCGAGAGCGGGTGAAGATGTTGGCGATCTGTGTGTGGTT
GTCTGCAATTGTGATAGTATATCACACGTATACGAGCATGGACTGGAAAG
CAACGGTTGGAGGTTGGGGAGGGGAGGAGAGGTAGGAGGAGG back to topCoding sequence (CDS) from alignment at chr5:982337..985528+ >NO05G03760.1 ID=NO05G03760.1|Name=NO05G03760.1|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at chr5:982337..985528+ (Nannochloropsis oceanica)
ATGCCATGCGGCGACCATGCCCCACGACTGCCGAATGAGGACCTAGAGGA
GGCAGCCGGTCACTACTCGGAGGAATCTTACGACGCCCGTCGGGACAAGC
ACCATCACTACCTTACCCAATACCAGCTACAACAACAACTGCCCCAACAA
GGGTCCACTAGCAGCCGTACCAGCAGTGTTAGCAGCTGCTCCACAGCGCT
TCTCGCCGACACGGACCACATCTGTCTTGAAGCAGAAGCAAGCGAGGAGG
AAGGATCCAGCGGTGGGGACAGGTTTGAGAGCGGAGCGGCACCGCGGGTG
GTGATTTTTACCGCTGCTTATTACGTGTGTGATGGCGTGAGTCTCACAAT
ACGGAAACTCCGGGGGCACCTTCAATCGAAAGGGATCGCATCTCGCGTCG
TATCGTGTGGGCCTGCGGGCTGGAGCGAACCAGATGTATTTACGGTCCCT
TCAATTCCGTTGCCGATTATTAATGCAGATGATAACTTTGGGTATTCTCT
AGGGCTCAAACTGACGGAACGTTGCAAGGCGCAGATCAAGAGTTTTAAGC
CTTCGGTCATTCACTTCACTGTGCCGGATTTTTTGGCTTTGGATGCCCTG
AGGTGGGCGAAGGCGGAGCATATCCCAGTGATGGGCACATGGCACAGCAA
TTATTCCGATTATCTGAAGTTTTATCATTTGAATATAATTCGATTGCCCG
TGGAGAGGTACATTAGGTCGTTTTACGTTAACATGCCCATCTACGTTCCC
ACGCCGTTTATTCGCAAGCGGTTGTTGGATAGTGGGTTTCCGACAGAACG
AGTGGGGATATGGGGGAGGGGGGTCGATTTCAATATGTTCAAGCCGTCGA
ATCGATCGATGGCATTCAGGCGGGAGAGGGGGATTGAGGATGATGAGGTC
GTCATATTGTGGGTGGGGCGTCTGGTTAAGGAAAAGAGTCCTGATATATG
GGCGGAGGTAATACGGAGATTGGAAAGAGAGGGGTTAAGATTTCGAGCTC
TGGTGGTGGGGAGCGGGAGTTGGGAGGAGAATATGAAAAAATTGCCAAGG
ACAGAGCATTTGGGGTGGTTGAGTGGGGAGGCGTTGGCGCGGGTGTATGC
GAGTGTGGACGTGTTTTTATTCCCGAGCGAGGTGGAGACGTTTGGTAATG
TCACGTTGGAGGCCTTGGCAAGCGGCGTGCCGTGTGTGGCGTCAGCGGGA
TGCAGTGGACATCTGGTAAGTCATGGGATCAATGGTTTTGTGGTGGGAAA
GGCGGATGTGGAGGAGTATTATATGTTGACGAGGCGTTTGGTGGTGGACA
AGGGATTGAGGGAGCGATTTGCGGCGAAAGCAAGGGGCAGCATCAAGGAA
CTGGAGCATGATAGAGTGATGGATATGATGGTCACGAATTATGAGGGGGT
AATGCATGCTTATCATCAGGTTGGGGGGGACGGCTGCGCGAGTCGGAGTA
ATGGCTGGGGGGATGTCTGGATAGCGATGATATTTCACTTTTTTTCGTTT
TTACTTTGGTTGGGGACACCGTTGATGAAGGGATATGTGGCTGTCGCGAG
TGGGGTGGGGGCATGCTGGAGGCGGCCGTTTTGGGGGGGATTGCCGGATC
GGATGCTGATGGGCTTTGCACGGTGTTTTTCTTGTTTGATACGACGGCAG
CAGCTGCAGCTGCCTCGAGTAGGGGGGGGAAGGGGAGGTGGAGAAAGGGA
AGGAGGGAGGCCGGTATTTCGAGAGCGGGTGAAGATGTTGGCGATCTGTG
TGTGGTTGTCTGCAATTGTGATAGTATATCACACGTATACGAGCATGGAC
TGGAAAGCAACGGTTGGAGGTTGGGGAGGGGAGGAGAGGTAG back to top
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