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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:912078..913658 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03470.1 vs.
Match: EWM28047.1 (tata-box binding protein [Nannochloropsis gaditana]) HSP 1 Score: 370.5 bits (950), Expect = 4.600e-99 Identity = 201/256 (78.52%), Postives = 216/256 (84.38%), Query Frame = 0
Query: 1 MASQMTSGGGFGEISPLVRGSSGAAGGGAGGESSIGPGSAAGGPSIETVRFVNSIKLTNVVATVNLDCKPELKSIALGARNAEYNPRRFPAVIMHIKDPKSAALIFSSGKMVVTGTRSEEDSLRAAQKYTSIMRRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTKRDMDAALEKLHPILLEYRKLPMAPSMVVVGSGE----EGGREGEGE 253
MAS + GGG +SP++R ++G G G GGPS ET+RFV SIKLTNVVATVNLDCKP+LKSIALGARNAEYNPRRFPAVIMHIK+PKSAALIFSSGKMVVTGTRSE DSL+AA KYT+IM+RLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKT+RDMDAALEKLHPILLEYRK+P APS V V G GGR G G+
Sbjct: 1 MASPLMGGGG--GLSPIMRSNAGPPAGHMEG--------GTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRKMPAAPSSVPVKEGAMSAGGGGRGGVGK 246
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03470.1 ID=NO05G03470.1|Name=NO05G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp GGGAGGTCAGACGGTAAGAGGAGCCAACTTTGTTTCCCCAAAAATCAGAC AGGATAAGGCAAGCAAACACATAACTCGTGCATCAGTCTTCACGGCAAAG TTTTCAGCGGGGCACGATGAAACGAGTAGGCAAAGCACAGAAACAAGCGG TAGCTTCTTCTTCTCCGCTTTCGGACGAGTACGGCAGCCTTGCCCCCTCC TTCCCATTTCGTAAACCTGACCTATCCCACTTCCTGCCTCTCACTATTGT CCAACACCACCACTAGCACAGACGCGTCCTCCCTCTTTTCGTCGTGCACG TCCATCAGGAGGCCGAGCCGCCGCGTTCGCGTTTTAAGTGCAACGCCTTG TTTGAGCGTCCGCATCACCATCGATATCTCAAGCACACGTCTGCACATAA ACGACACACCACCAGAGCCGCACCAGCACATCAATGGCAAGCCAAATGAC GAGCGGCGGCGGCTTCGGTGAGATCAGTCCGTTGGTGCGCGGTAGTTCAG GCGCGGCCGGGGGCGGTGCCGGAGGAGAGAGTAGCATAGGACCCGGCAGC GCCGCAGGTGGCCCGAGCATAGAGACAGTCCGCTTCGTAAACTCCATTAA GCTCACCAACGTCGTGGCCACCGTGAACCTAGACTGCAAACCCGAGCTGA AGAGCATTGCTCTGGGCGCTCGAAATGCGGAGTACAACCCTCGGCGGTTT CCCGCTGTGATAATGCATATCAAGGATCCTAAGTCAGCGGCCCTTATCTT CTCCTCTGGCAAAATGGTCGTGACAGGGACCCGTTCCGAAGAGGACTCAT TGCGAGCCGCGCAGAAGTACACAAGTATCATGAGACGACTCAAGTGTGCG GCTAATTGTACGGAATTCCGCGTGCAGAATATGACGGCTTCGTGTGATAT TGGTTTCCCCATCCGCTTGGAGGGGTTAGTGATGGACCAGCCTCGTTTCT GTTCCTATGAGCCAGAGCTCTTCCCTGGGCTGGTCTACCGTATGTATAAT CCTAAAATCGTTCTGTTGATATTTGTATCTGGGAGGATTATCATCACAGG GGCTAAGACGAAGAGGGACATGGATGCAGCGCTGGAGAAGTTGCATCCGA TTTTATTGGAGTACAGGAAGCTCCCTATGGCGCCTTCAATGGTGGTGGTG GGGAGTGGAGAGGAAGGAGGAAGAGAAGGAGAAGGAGAAGGAGGGGGGGC ATTGGTGGAGGAAGGGGGGGAAAGAGGAAACGGTGAGGAGGAAATTGAGA AGACTGTTGTTGACTGTTTGTGGGTGGGATTTGTTGAGAGTATGTAGATT AGAAACTCTCTGATTGTCGAATAGCATATTAATTGGCGTGGATGGTGGCT GTAGGTAGGTAAAAGTCAAAAGACAACAAAAGTAGGAGCTACTGTAGGAG GAGGAGTTGCATTAAGCATGGGGTGGTGATGGTATGTGAAAATGTGGAGA CAAAGTGTTCTTTTCACCCAAACGCACTGTGTAGAGGAAAAAGCAGGAAC AAACCAGAATACAATTACAACCACAACATACAAATAATTCACCACTTTAA AGAAACCGAACAGAGAACAGACAATGGAGGA back to topprotein sequence of NO05G03470.1 >NO05G03470.1-protein ID=NO05G03470.1-protein|Name=NO05G03470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp MASQMTSGGGFGEISPLVRGSSGAAGGGAGGESSIGPGSAAGGPSIETVR FVNSIKLTNVVATVNLDCKPELKSIALGARNAEYNPRRFPAVIMHIKDPK SAALIFSSGKMVVTGTRSEEDSLRAAQKYTSIMRRLKCAANCTEFRVQNM TASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSG RIIITGAKTKRDMDAALEKLHPILLEYRKLPMAPSMVVVGSGEEGGREGE GEGGGALVEEGGERGNGEEEIEKTVVDCLWVGFVESM* back to topmRNA from alignment at chr5:912078..913658+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03470.1 ID=NO05G03470.1|Name=NO05G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp|location=Sequence derived from alignment at chr5:912078..913658+ (Nannochloropsis oceanica) GGGAGGTCAGACGGTAAGAGGAGCCAACTTTGTTTCCCCAAAAATCAGAC
AGGATAAGGCAAGCAAACACATAACTCGTGCATCAGTCTTCACGGCAAAG
TTTTCAGCGGGGCACGATGAAACGAGTAGGCAAAGCACAGAAACAAGCGG
TAGCTTCTTCTTCTCCGCTTTCGGACGAGTACGGCAGCCTTGCCCCCTCC
TTCCCATTTCGTAAACCTGACCTATCCCACTTCCTGCCTCTCACTATTGT
CCAACACCACCACTAGCACAGACGCGTCCTCCCTCTTTTCGTCGTGCACG
TCCATCAGGAGGCCGAGCCGCCGCGTTCGCGTTTTAAGTGCAACGCCTTG
TTTGAGCGTCCGCATCACCATCGATATCTCAAGCACACGTCTGCACATAA
ACGACACACCACCAGAGCCGCACCAGCACATCAATGGCAAGCCAAATGAC
GAGCGGCGGCGGCTTCGGTGAGATCAGTCCGTTGGTGCGCGGTAGTTCAG
GCGCGGCCGGGGGCGGTGCCGGAGGAGAGAGTAGCATAGGACCCGGCAGC
GCCGCAGGTGGCCCGAGCATAGAGACAGTCCGCTTCGTAAACTCCATTAA
GCTCACCAACGTCGTGGCCACCGTGAACCTAGACTGCAAACCCGAGCTGA
AGAGCATTGCTCTGGGCGCTCGAAATGCGGAGTACAACCCTCGGCGGTTT
CCCGCTGTGATAATGCATATCAAGGATCCTAAGTCAGCGGCCCTTATCTT
CTCCTCTGGCAAAATGGTCGTGACAGGGACCCGTTCCGAAGAGGACTCAT
TGCGAGCCGCGCAGAAGTACACAAGTATCATGAGACGACTCAAGTGTGCG
GCTAATTGTACGGAATTCCGCGTGCAGAATATGACGGCTTCGTGTGATAT
TGGTTTCCCCATCCGCTTGGAGGGGTTAGTGATGGACCAGCCTCGTTTCT
GTTCCTATGAGCCAGAGCTCTTCCCTGGGCTGGTCTACCGTATGTATAAT
CCTAAAATCGTTCTGTTGATATTTGTATCTGGGAGGATTATCATCACAGG
GGCTAAGACGAAGAGGGACATGGATGCAGCGCTGGAGAAGTTGCATCCGA
TTTTATTGGAGTACAGGAAGCTCCCTATGGCGCCTTCAATGGTGGTGGTG
GGGAGTGGAGAGGAAGGAGGAAGAGAAGGAGAAGGAGAAGGAGGGGGGGC
ATTGGTGGAGGAAGGGGGGGAAAGAGGAAACGGTGAGGAGGAAATTGAGA
AGACTGTTGTTGACTGTTTGTGGGTGGGATTTGTTGAGAGTATGTAGATT
AGAAACTCTCTGATTGTCGAATAGCATATTAATTGGCGTGGATGGTGGCT
GTAGGTAGGTAAAAGTCAAAAGACAACAAAAGTAGGAGCTACTGTAGGAG
GAGGAGTTGCATTAAGCATGGGGTGGTGATGGTATGTGAAAATGTGGAGA
CAAAGTGTTCTTTTCACCCAAACGCACTGTGTAGAGGAAAAAGCAGGAAC
AAACCAGAATACAATTACAACCACAACATACAAATAATTCACCACTTTAA
AGAAACCGAACAGAGAACAGACAATGGAGGA back to topCoding sequence (CDS) from alignment at chr5:912078..913658+ >NO05G03470.1 ID=NO05G03470.1|Name=NO05G03470.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr5:912078..913658+ (Nannochloropsis oceanica) ATGGCAAGCCAAATGACGAGCGGCGGCGGCTTCGGTGAGATCAGTCCGTT GGTGCGCGGTAGTTCAGGCGCGGCCGGGGGCGGTGCCGGAGGAGAGAGTA GCATAGGACCCGGCAGCGCCGCAGGTGGCCCGAGCATAGAGACAGTCCGC TTCGTAAACTCCATTAAGCTCACCAACGTCGTGGCCACCGTGAACCTAGA CTGCAAACCCGAGCTGAAGAGCATTGCTCTGGGCGCTCGAAATGCGGAGT ACAACCCTCGGCGGTTTCCCGCTGTGATAATGCATATCAAGGATCCTAAG TCAGCGGCCCTTATCTTCTCCTCTGGCAAAATGGTCGTGACAGGGACCCG TTCCGAAGAGGACTCATTGCGAGCCGCGCAGAAGTACACAAGTATCATGA GACGACTCAAGTGTGCGGCTAATTGTACGGAATTCCGCGTGCAGAATATG ACGGCTTCGTGTGATATTGGTTTCCCCATCCGCTTGGAGGGGTTAGTGAT GGACCAGCCTCGTTTCTGTTCCTATGAGCCAGAGCTCTTCCCTGGGCTGG TCTACCGTATGTATAATCCTAAAATCGTTCTGTTGATATTTGTATCTGGG AGGATTATCATCACAGGGGCTAAGACGAAGAGGGACATGGATGCAGCGCT GGAGAAGTTGCATCCGATTTTATTGGAGTACAGGAAGCTCCCTATGGCGC CTTCAATGGTGGTGGTGGGGAGTGGAGAGGAAGGAGGAAGAGAAGGAGAA GGAGAAGGAGGGGGGGCATTGGTGGAGGAAGGGGGGGAAAGAGGAAACGG TGAGGAGGAAATTGAGAAGACTGTTGTTGACTGTTTGTGGGTGGGATTTG TTGAGAGTATGTAG back to top
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