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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:907561..910154 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03450.1 vs.
Match: EWM28076.1 (zz-type zinc finger-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 785.8 bits (2028), Expect = 9.100e-224 Identity = 452/592 (76.35%), Postives = 489/592 (82.60%), Query Frame = 0
Query: 1 MVHEITSGAELRQTVSSGRLVVIDFTASWCGPCRMAAPQFESMAGRYPDVVFAKVVEDNSKDIIASEGIRAFPTFRIYLNSQVLEEFRGANMGALEAAVQRHAANVGPASFSGTGSSLGGSGIAAASAEAAAEEARAARLRRLGIDPGA--------KPASKPVAASAATARAAASSPNPMDLASV---SGEDVLARTTADLDKEDAEDEALLASMIMKASVVSAASAASSSSSSGGESLGEGGAAGGAMQMIEPPVDEVLLKSLLEFEFPELRAKKALLATNNGSLDAAIEWITNHQEDADIDAPITLVPQLDMSALPGAGPPKKKLTLEELKARIAARRAEREEMEKKDDVNREKLRRESGKSIIKTNEELQRLSRQREFAAMKKEKEAQKAERERLRLEIAKDKAERASRGGYLPGRLDADGYNPSGLQGAYGASVPGAEETGEGGGRDEGMGTS---------KSAAAKEMPAGSTSMEAAEKAIGLMKRQRIADGGGMALKTLIAYVKNIIETPAEEKFRSINVENKAFKGRVATVVGGTGFLKAVGFVKNDGEGRWFLAPENVDVVFLGEVKAKLEAALMEYVSTI 573
MV EITSGAELR+ V SG LVVIDFTASWCGPCRMAAPQFE+MA RYPDVVFAKVVEDNSKDIIASEGI+AFPTFR+YLNSQ+LEEFRGANMGALEAAVQRH A+ GP SFSG+G SLGG G +SAEAAAEEAR ARLRRLGIDP A KPA+ AA A + A ASSP+PMD ASV +G + RT ADLDKEDAEDEALLASMI K AA SSS G S GEG A GGAMQM+EPPVD+ LL+SLLEFEFPE+RAKKALLA NN S+DAAI+WIT+HQEDADIDAPI LVPQLDMSALPGAGPPKKK+TLEELKARIAARRAER EMEKK++V REKLRRESGKSIIKTNEELQRL RQREFAAM+KEKEAQKAERERLR+EIAKDKAERASRGGYLPGRLDADGYNPSGLQGAYGASV G E+T EGG G GT+ + M G+TSME+ EKAIGLMKRQRIADGGGMALKTLIAYVKNI TP EEKFRSIN+ENKAFK RVA V+GG+ LKA+GF K+D EGRWFLAPE+VDV FLGEVK KLEAAL+EY S I
Sbjct: 1 MVQEITSGAELRRMVGSGSLVVIDFTASWCGPCRMAAPQFEAMARRYPDVVFAKVVEDNSKDIIASEGIQAFPTFRVYLNSQMLEEFRGANMGALEAAVQRHQASAGPVSFSGSGFSLGGGGPGPSSAEAAAEEARIARLRRLGIDPSAPAPTAAASKPAAVAPAAKAPASGAMASSPDPMDTASVGDDTGGEDSGRTAADLDKEDAEDEALLASMIKKV-------AAGSSSGEAG-SGGEGTAEGGAMQMVEPPVDQALLQSLLEFEFPEIRAKKALLAVNNSSVDAAIQWITDHQEDADIDAPIALVPQLDMSALPGAGPPKKKITLEELKARIAARRAERNEMEKKEEVQREKLRRESGKSIIKTNEELQRLQRQREFAAMRKEKEAQKAERERLRMEIAKDKAERASRGGYLPGRLDADGYNPSGLQGAYGASVAGGEDTSEGG---VGTGTTVEKVPRAVGSGKGEEAMAPGTTSMESVEKAIGLMKRQRIADGGGMALKTLIAYVKNIAGTPGEEKFRSINLENKAFKSRVAPVLGGSSLLKAIGFTKDDVEGRWFLAPEHVDVAFLGEVKGKLEAALIEYASEI 581
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03450.1 ID=NO05G03450.1|Name=NO05G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp
GAGTACCTTTTTCTTATGACGCTGAATCCCATCTTTTGATCTGCCTTTCT
CAGTACACAACCACAATTGACGAGTGTACTTACAAAGGCACTAGTCGCCA
GTCGCCCGGCAGGCCGTGGAGACTACGCGGGCTTCCGGGCAGTTACCACA
GCTGCCTCAGGAACGACGTCGAGTTTCCGCTCGCCCACGTGCTTCCGCGA
TGATCAACCACGCGTGCTCTGAACCCATGCACACATCGACCATCATCAAG
CCACAGGCACGCACATCTCAAGCACAAGTAGAGCAAATCCATGGTCCATG
AAATCACTAGCGGGGCCGAGCTGCGCCAGACGGTGAGCAGCGGCCGGCTG
GTCGTGATCGACTTTACCGCCAGCTGGTGTGGGCCTTGTCGCATGGCCGC
GCCCCAATTTGAATCCATGGCTGGCCGGTACCCCGACGTGGTGTTTGCCA
AGGTAGTGGAGGACAACTCCAAGGACATCATCGCCTCGGAAGGCATCCGA
GCATTTCCCACCTTCCGCATCTACCTCAACAGCCAAGTCCTGGAAGAGTT
CAGGGGCGCCAATATGGGTGCACTCGAGGCGGCGGTGCAACGTCATGCTG
CGAATGTAGGGCCTGCCTCTTTCTCGGGGACAGGCAGCAGCCTGGGTGGT
AGCGGCATCGCAGCCGCGAGCGCTGAGGCTGCCGCTGAGGAGGCACGTGC
TGCCCGCTTGCGACGCTTAGGTATCGACCCTGGTGCAAAGCCTGCAAGTA
AGCCTGTTGCTGCTTCTGCGGCTACGGCGAGAGCGGCGGCTTCGTCCCCT
AACCCTATGGACCTGGCATCAGTGAGCGGGGAGGATGTGTTGGCGAGAAC
CACGGCAGACTTGGATAAGGAGGATGCGGAGGACGAGGCGTTGCTCGCGT
CGATGATTATGAAGGCTTCTGTTGTCTCTGCTGCTTCAGCGGCGAGCAGC
AGCAGCAGCAGCGGGGGGGAGAGCTTGGGGGAGGGAGGGGCTGCGGGGGG
GGCGATGCAGATGATCGAACCTCCGGTGGATGAGGTTTTGCTGAAGAGTT
TGTTGGAGTTTGAGTTTCCAGAATTGCGAGCGAAGAAGGCGCTGTTGGCT
ACGAATAATGGGAGTCTGGACGCGGCGATTGAGTGGATTACGAACCATCA
GGAGGATGCTGACATTGACGCGCCCATTACTCTGGTGCCTCAGCTGGACA
TGTCAGCGCTACCTGGCGCGGGGCCCCCTAAGAAGAAGCTCACGTTGGAA
GAGCTCAAGGCCCGAATAGCCGCCCGTCGCGCAGAACGCGAAGAAATGGA
GAAGAAGGATGATGTGAACCGCGAAAAACTTCGGCGGGAGTCCGGAAAGA
GCATCATCAAGACCAATGAGGAACTGCAGCGCTTGTCCCGGCAGAGGGAA
TTCGCGGCGATGAAGAAGGAGAAAGAGGCCCAGAAAGCAGAGAGGGAGCG
GTTGCGGTTGGAGATTGCCAAGGACAAGGCAGAGCGAGCATCGAGGGGTG
GGTATTTGCCGGGACGGCTCGATGCGGATGGCTATAATCCTTCAGGGCTG
CAAGGCGCCTACGGAGCGAGCGTGCCAGGTGCGGAGGAGACGGGAGAGGG
TGGAGGGAGGGATGAGGGAATGGGTACCAGCAAGAGTGCTGCTGCGAAAG
AGATGCCGGCAGGGAGTACGTCGATGGAGGCGGCGGAGAAGGCAATTGGA
TTGATGAAGCGACAACGAATCGCGGATGGGGGGGGGATGGCGCTCAAGAC
ACTCATTGCGTATGTGAAGAACATCATCGAGACCCCTGCGGAAGAGAAAT
TTCGGTCGATAAACGTCGAGAATAAGGCGTTTAAGGGGCGGGTTGCGACG
GTGGTGGGGGGAACGGGTTTTTTGAAGGCGGTGGGATTCGTGAAAAATGA
CGGGGAGGGACGTTGGTTTTTAGCGCCCGAGAATGTGGATGTAGTGTTTT
TGGGTGAAGTGAAGGCGAAGCTTGAGGCGGCGCTGATGGAATACGTCAGT
ACAATTTAGAAGAGTCAGTGAAGTACAGGTGGGGTGTGATGGATCGCGAG
AGAGGCATGAGGAGATTTGGAGAGGAACCATGAGAGAGCCGAGGGAGAAG
GGAAAGGGTGGGGGGGATGGGTAACACATAAAGAAGGGGTAAACAAGTGA
GAGGTAAATCAGCGAGGATATCGATAGAAAGGGAGATGGAAGAGGAGAGA
GAGATGTATCAATGTCACAGAAGGGAGTCAGGTAAAAAAAGGCTCTGCAG
GCTTCACGTGACGGACATAATGAAGGATGGGGAGGGAAGGCCTCCAAATT
TATTTGGAGGCCCATAAAGAAAAGAAGACAGGCATAAACGAGGATAAGAG
AAG back to topprotein sequence of NO05G03450.1 >NO05G03450.1-protein ID=NO05G03450.1-protein|Name=NO05G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MVHEITSGAELRQTVSSGRLVVIDFTASWCGPCRMAAPQFESMAGRYPDV
VFAKVVEDNSKDIIASEGIRAFPTFRIYLNSQVLEEFRGANMGALEAAVQ
RHAANVGPASFSGTGSSLGGSGIAAASAEAAAEEARAARLRRLGIDPGAK
PASKPVAASAATARAAASSPNPMDLASVSGEDVLARTTADLDKEDAEDEA
LLASMIMKASVVSAASAASSSSSSGGESLGEGGAAGGAMQMIEPPVDEVL
LKSLLEFEFPELRAKKALLATNNGSLDAAIEWITNHQEDADIDAPITLVP
QLDMSALPGAGPPKKKLTLEELKARIAARRAEREEMEKKDDVNREKLRRE
SGKSIIKTNEELQRLSRQREFAAMKKEKEAQKAERERLRLEIAKDKAERA
SRGGYLPGRLDADGYNPSGLQGAYGASVPGAEETGEGGGRDEGMGTSKSA
AAKEMPAGSTSMEAAEKAIGLMKRQRIADGGGMALKTLIAYVKNIIETPA
EEKFRSINVENKAFKGRVATVVGGTGFLKAVGFVKNDGEGRWFLAPENVD
VVFLGEVKAKLEAALMEYVSTI* back to topmRNA from alignment at chr5:907561..910154- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03450.1 ID=NO05G03450.1|Name=NO05G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2594bp|location=Sequence derived from alignment at chr5:907561..910154- (Nannochloropsis oceanica)
GAGTACCTTTTTCTTATGACGCTGAATCCCATCTTTTGATCTGCCTTTCT
CAGTACACAACCACAATTGACGAGTGTACTTACAAAGGCACTAGTCGCCA
GTCGCCCGGCAGGCCGTGGAGACTACGCGGGCTTCCGGGCAGTTACCACA
GCTGCCTCAGGAACGACGTCGAGTTTCCGCTCGCCCACGTGCTTCCGCGA
TGATCAACCACGCGTGCTCTGAACCCATGCACACATCGACCATCATCAAG
CCACAGGCACGCACATCTCAAGCACAAGTAGAGCAAATCCATGGTCCATG
AAATCACTAGCGGGGCCGAGCTGCGCCAGACGGTAGGTTCTTATCTTTCT
TACCCCTTCCGAACGCCCACATTAACGCCAAGGAAGGCAGCACCTCACGC
CCTCTCTTCCTCCAACTCTTTTAGGTGAGCAGCGGCCGGCTGGTCGTGAT
CGACTTTACCGCCAGCTGGTGTGGGCCTTGTCGCATGGCCGCGCCCCAAT
TTGAATCCATGGCTGGCCGGTACCCCGACGTGGTGTTTGCCAAGGTAGTG
GAGGACAACTCCAAGGACATCATCGCCTCGGAAGGCATCCGAGCATTTCC
CACCTTCCGCATCTACCTCAACAGCCAAGTCCTGGAAGAGTTCAGGGGCG
CCAATATGGGTGCACTCGAGGCGGCGGTGCAACGTCATGCTGCGAATGTA
GGGCCTGCCTCTTTCTCGGGGACAGGCAGCAGCCTGGGTGGTAGCGGCAT
CGCAGCCGCGAGCGCTGAGGCTGCCGCTGAGGAGGCACGTGCTGCCCGCT
TGCGACGCTTAGGTATCGACCCTGGTGCAAAGCCTGCAAGTAAGCCTGTT
GCTGCTTCTGCGGCTACGGCGAGAGCGGCGGCTTCGTCCCCTAACCCTAT
GGACCTGGCATCAGTGAGCGGGGAGGATGTGTTGGCGAGAACCACGGCAG
ACTTGGATAAGGAGGATGCGGAGGACGAGGCGTTGCTCGCGTCGATGATT
ATGAAGGCTTCTGTTGTCTCTGCTGCTTCAGCGGCGAGCAGCAGCAGCAG
CAGCGGGGGGGAGAGCTTGGGGGAGGGAGGGGCTGCGGGGGGGGCGATGC
AGATGATCGAACCTCCGGTGGATGAGGTTTTGCTGAAGAGTTTGTTGGAG
TTTGAGTTTCCAGAATTGCGAGCGAAGAAGGCGCTGTTGGCTACGAATAA
TGGGAGTCTGGACGCGGCGATTGAGTGGATTACGAACCATCAGGTACGTG
ATGGGAGGAAGGGACATGATTTGGCGGGACGGGTTTGTGGTGGCGCTTTA
TTTGTTTTCCCCTTCCTTTTGGGTGCTGGATTGCAGTGGTTGGCAGCTAT
ACTTATTCATGTAGCCTATTTTGCTTTCTCGTGACTCAACAGGAGGATGC
TGACATTGACGCGCCCATTACTCTGGTGCCTCAGCTGGACATGTCAGCGC
TACCTGGCGCGGGGCCCCCTAAGAAGAAGCTCACGTTGGAAGAGCTCAAG
GCCCGAATAGCCGCCCGTCGCGCAGAACGCGAAGAAATGGAGAAGAAGGA
TGATGTGAACCGCGAAAAACTTCGGCGGGAGTCCGGAAAGAGCATCATCA
AGACCAATGAGGAACTGCAGCGCTTGTCCCGGCAGAGGGAATTCGCGGCG
ATGAAGAAGGAGAAAGAGGCCCAGAAAGCAGAGAGGGAGCGGTTGCGGTT
GGAGATTGCCAAGGACAAGGCAGAGCGAGCATCGAGGGGTGGGTATTTGC
CGGGACGGCTCGATGCGGATGGCTATAATCCTTCAGGGCTGCAAGGCGCC
TACGGAGCGAGCGTGCCAGGTGCGGAGGAGACGGGAGAGGGTGGAGGGAG
GGATGAGGGAATGGGTACCAGCAAGAGTGCTGCTGCGAAAGAGATGCCGG
CAGGGAGTACGTCGATGGAGGCGGCGGAGAAGGCAATTGGATTGATGAAG
CGACAACGAATCGCGGATGGGGGGGGGATGGCGCTCAAGACACTCATTGC
GTATGTGAAGAACATCATCGAGACCCCTGCGGAAGAGAAATTTCGGTCGA
TAAACGTCGAGAATAAGGCGTTTAAGGGGCGGGTTGCGACGGTGGTGGGG
GGAACGGGTTTTTTGAAGGCGGTGGGATTCGTGAAAAATGACGGGGAGGG
ACGTTGGTTTTTAGCGCCCGAGAATGTGGATGTAGTGTTTTTGGGTGAAG
TGAAGGCGAAGCTTGAGGCGGCGCTGATGGAATACGTCAGTACAATTTAG
AAGAGTCAGTGAAGTACAGGTGGGGTGTGATGGATCGCGAGAGAGGCATG
AGGAGATTTGGAGAGGAACCATGAGAGAGCCGAGGGAGAAGGGAAAGGGT
GGGGGGGATGGGTAACACATAAAGAAGGGGTAAACAAGTGAGAGGTAAAT
CAGCGAGGATATCGATAGAAAGGGAGATGGAAGAGGAGAGAGAGATGTAT
CAATGTCACAGAAGGGAGTCAGGTAAAAAAAGGCTCTGCAGGCTTCACGT
GACGGACATAATGAAGGATGGGGAGGGAAGGCCTCCAAATTTATTTGGAG
GCCCATAAAGAAAAGAAGACAGGCATAAACGAGGATAAGAGAAG back to topCoding sequence (CDS) from alignment at chr5:907561..910154- >NO05G03450.1 ID=NO05G03450.1|Name=NO05G03450.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr5:907561..910154- (Nannochloropsis oceanica)
ATGGTCCATGAAATCACTAGCGGGGCCGAGCTGCGCCAGACGGTGAGCAG
CGGCCGGCTGGTCGTGATCGACTTTACCGCCAGCTGGTGTGGGCCTTGTC
GCATGGCCGCGCCCCAATTTGAATCCATGGCTGGCCGGTACCCCGACGTG
GTGTTTGCCAAGGTAGTGGAGGACAACTCCAAGGACATCATCGCCTCGGA
AGGCATCCGAGCATTTCCCACCTTCCGCATCTACCTCAACAGCCAAGTCC
TGGAAGAGTTCAGGGGCGCCAATATGGGTGCACTCGAGGCGGCGGTGCAA
CGTCATGCTGCGAATGTAGGGCCTGCCTCTTTCTCGGGGACAGGCAGCAG
CCTGGGTGGTAGCGGCATCGCAGCCGCGAGCGCTGAGGCTGCCGCTGAGG
AGGCACGTGCTGCCCGCTTGCGACGCTTAGGTATCGACCCTGGTGCAAAG
CCTGCAAGTAAGCCTGTTGCTGCTTCTGCGGCTACGGCGAGAGCGGCGGC
TTCGTCCCCTAACCCTATGGACCTGGCATCAGTGAGCGGGGAGGATGTGT
TGGCGAGAACCACGGCAGACTTGGATAAGGAGGATGCGGAGGACGAGGCG
TTGCTCGCGTCGATGATTATGAAGGCTTCTGTTGTCTCTGCTGCTTCAGC
GGCGAGCAGCAGCAGCAGCAGCGGGGGGGAGAGCTTGGGGGAGGGAGGGG
CTGCGGGGGGGGCGATGCAGATGATCGAACCTCCGGTGGATGAGGTTTTG
CTGAAGAGTTTGTTGGAGTTTGAGTTTCCAGAATTGCGAGCGAAGAAGGC
GCTGTTGGCTACGAATAATGGGAGTCTGGACGCGGCGATTGAGTGGATTA
CGAACCATCAGGAGGATGCTGACATTGACGCGCCCATTACTCTGGTGCCT
CAGCTGGACATGTCAGCGCTACCTGGCGCGGGGCCCCCTAAGAAGAAGCT
CACGTTGGAAGAGCTCAAGGCCCGAATAGCCGCCCGTCGCGCAGAACGCG
AAGAAATGGAGAAGAAGGATGATGTGAACCGCGAAAAACTTCGGCGGGAG
TCCGGAAAGAGCATCATCAAGACCAATGAGGAACTGCAGCGCTTGTCCCG
GCAGAGGGAATTCGCGGCGATGAAGAAGGAGAAAGAGGCCCAGAAAGCAG
AGAGGGAGCGGTTGCGGTTGGAGATTGCCAAGGACAAGGCAGAGCGAGCA
TCGAGGGGTGGGTATTTGCCGGGACGGCTCGATGCGGATGGCTATAATCC
TTCAGGGCTGCAAGGCGCCTACGGAGCGAGCGTGCCAGGTGCGGAGGAGA
CGGGAGAGGGTGGAGGGAGGGATGAGGGAATGGGTACCAGCAAGAGTGCT
GCTGCGAAAGAGATGCCGGCAGGGAGTACGTCGATGGAGGCGGCGGAGAA
GGCAATTGGATTGATGAAGCGACAACGAATCGCGGATGGGGGGGGGATGG
CGCTCAAGACACTCATTGCGTATGTGAAGAACATCATCGAGACCCCTGCG
GAAGAGAAATTTCGGTCGATAAACGTCGAGAATAAGGCGTTTAAGGGGCG
GGTTGCGACGGTGGTGGGGGGAACGGGTTTTTTGAAGGCGGTGGGATTCG
TGAAAAATGACGGGGAGGGACGTTGGTTTTTAGCGCCCGAGAATGTGGAT
GTAGTGTTTTTGGGTGAAGTGAAGGCGAAGCTTGAGGCGGCGCTGATGGA
ATACGTCAGTACAATTTAG back to top
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