NO05G01330.1, NO05G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01330.1
Unique NameNO05G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr5:384805..385758 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:384805..385758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01330.1 vs.
Match: EWM28149.1 (glutamine cyclotransferase [Nannochloropsis gaditana])

HSP 1 Score: 430.6 bits (1106), Expect = 4.100e-117
Identity = 212/303 (69.97%), Postives = 251/303 (82.84%), Query Frame = 0 
Query:    1 MPRFTRAWAMSLLVVAPTLAVAFAAGHSASSPSTSRSSSSSGSSSSSSTTQDRPVKMHRGLQKRTSFVILEEFAHDPEAFTQGLVYEDDGTLLEGTGLYGKSKLRRVNAKTGEVMASEEIDKRYFGEGIVAVDDKIIQITWKERKALVYGRQNLTLLYDFIYDTSNHEGWGITTDGDRLIVSDGSSNLHFWDKTTYQEIPNSRLRVEDGFGKAVNHLNELEYAYGYVWANIWLADDIVQIDPSTGKVVAFYDFSVLYPHTQRMSVDQVLNGIAYDSTEDVFYLTGKWWPKYYKVKMCIEENAV 304
            MP + R WA +LLVVAPTL +AFAAG+  SS  ++ S +S+ +   +S      +KMHRGLQ RTS+VI+EEFAHDP AFTQGLVYE+DGT LEGTGLYGKSKLRRV+A TGEV+ S ++    FGEGIVAVDDKIIQ+TWKERKALVYGRQNLTLL DF Y+T   EGWGITTDG RLIVSDGS+NL FWDK TY+EIP SRL V+DG G AV HLNELE+A+GYVWAN+WL DDIVQIDP++GKVVAF+DFS L+PH  R+S+DQVLNGIA+D+  D+FYLTGKW+PKY+KVK+C+ E AV
Sbjct:    1 MPGYLRKWAGTLLVVAPTLTMAFAAGNPPSS--SAHSGNSANNKCETSMPGPAGLKMHRGLQTRTSYVIVEEFAHDPSAFTQGLVYEEDGTFLEGTGLYGKSKLRRVDASTGEVLVSHDLSADSFGEGIVAVDDKIIQLTWKERKALVYGRQNLTLLNDFKYETVTGEGWGITTDGARLIVSDGSANLFFWDKDTYKEIPESRLLVQDGHGNAVKHLNELEWAHGYVWANVWLTDDIVQIDPASGKVVAFHDFSALFPHHLRVSLDQVLNGIAFDAENDIFYLTGKWFPKYFKVKICLPEAAV 301
The following BLAST results are available for this feature:
BLAST of NO05G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28149.14.100e-11769.97glutamine cyclotransferase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01330NO05G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01330.1NO05G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01330.1.cds1NO05G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01330.1 ID=NO05G01330.1|Name=NO05G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATGCCTCGATTCACGAGGGCCTGGGCGATGTCCCTCCTCGTCGTTGCTCC
CACGCTGGCCGTGGCCTTTGCTGCAGGTCACTCTGCATCATCGCCCTCGA
CTTCGCGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGTACCACA
CAGGACCGTCCCGTCAAGATGCACAGGGGCCTGCAAAAGCGGACGAGTTT
CGTGATCCTTGAAGAGTTCGCACACGACCCTGAGGCGTTCACACAAGGGC
TGGTCTACGAGGATGACGGTACCCTCCTAGAAGGCACTGGGCTGTACGGC
AAGTCCAAATTGCGGCGAGTAAATGCTAAGACGGGCGAGGTGATGGCGTC
GGAAGAGATCGACAAGCGGTACTTTGGGGAGGGTATCGTGGCGGTGGACG
ACAAGATCATTCAGATCACCTGGAAAGAACGCAAAGCTCTGGTGTATGGT
CGCCAAAACCTGACGTTGCTCTACGACTTTATCTACGACACGAGCAACCA
TGAAGGATGGGGTATCACTACGGATGGAGATCGTCTGATTGTGTCCGACG
GCTCGTCGAATTTGCATTTCTGGGACAAAACCACTTACCAAGAAATTCCC
AATTCGCGCTTGCGTGTCGAAGACGGCTTTGGAAAAGCCGTGAATCACTT
GAATGAGTTGGAATATGCCTATGGTTATGTGTGGGCGAACATCTGGTTGG
CAGATGATATAGTTCAGATTGACCCGAGCACGGGCAAGGTGGTGGCGTTT
TACGATTTTTCTGTGCTGTATCCTCACACTCAACGGATGAGTGTCGACCA
GGTCCTTAACGGGATTGCATACGATTCGACCGAGGATGTTTTTTATTTGA
CGGGAAAGTGGTGGCCGAAATACTACAAAGTCAAGATGTGCATTGAGGAA
AACGCGGTGTGTGCGGCTGATGTAGGAGATGGGGAAACGTCGCCCCCGAA
GTAG
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protein sequence of NO05G01330.1

>NO05G01330.1-protein ID=NO05G01330.1-protein|Name=NO05G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MPRFTRAWAMSLLVVAPTLAVAFAAGHSASSPSTSRSSSSSGSSSSSSTT
QDRPVKMHRGLQKRTSFVILEEFAHDPEAFTQGLVYEDDGTLLEGTGLYG
KSKLRRVNAKTGEVMASEEIDKRYFGEGIVAVDDKIIQITWKERKALVYG
RQNLTLLYDFIYDTSNHEGWGITTDGDRLIVSDGSSNLHFWDKTTYQEIP
NSRLRVEDGFGKAVNHLNELEYAYGYVWANIWLADDIVQIDPSTGKVVAF
YDFSVLYPHTQRMSVDQVLNGIAYDSTEDVFYLTGKWWPKYYKVKMCIEE
NAVCAADVGDGETSPPK*
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mRNA from alignment at chr5:384805..385758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01330.1 ID=NO05G01330.1|Name=NO05G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at chr5:384805..385758+ (Nannochloropsis oceanica)
ATGCCTCGATTCACGAGGGCCTGGGCGATGTCCCTCCTCGTCGTTGCTCC
CACGCTGGCCGTGGCCTTTGCTGCAGGTCACTCTGCATCATCGCCCTCGA
CTTCGCGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGTACCACA
CAGGACCGTCCCGTCAAGATGCACAGGGGCCTGCAAAAGCGGACGAGTTT
CGTGATCCTTGAAGAGTTCGCACACGACCCTGAGGCGTTCACACAAGGGC
TGGTCTACGAGGATGACGGTACCCTCCTAGAAGGCACTGGGCTGTACGGC
AAGTCCAAATTGCGGCGAGTAAATGCTAAGACGGGCGAGGTGATGGCGTC
GGAAGAGATCGACAAGCGGTACTTTGGGGAGGGTATCGTGGCGGTGGACG
ACAAGATCATTCAGATCACCTGGAAAGAACGCAAAGCTCTGGTGTATGGT
CGCCAAAACCTGACGTTGCTCTACGACTTTATCTACGACACGAGCAACCA
TGAAGGATGGGGTATCACTACGGATGGAGATCGTCTGATTGTGTCCGACG
GCTCGTCGAATTTGCATTTCTGGGACAAAACCACTTACCAAGAAATTCCC
AATTCGCGCTTGCGTGTCGAAGACGGCTTTGGAAAAGCCGTGAATCACTT
GAATGAGTTGGAATATGCCTATGGTTATGTGTGGGCGAACATCTGGTTGG
CAGATGATATAGTTCAGATTGACCCGAGCACGGGCAAGGTGGTGGCGTTT
TACGATTTTTCTGTGCTGTATCCTCACACTCAACGGATGAGTGTCGACCA
GGTCCTTAACGGGATTGCATACGATTCGACCGAGGATGTTTTTTATTTGA
CGGGAAAGTGGTGGCCGAAATACTACAAAGTCAAGATGTGCATTGAGGAA
AACGCGGTGTGTGCGGCTGATGTAGGAGATGGGGAAACGTCGCCCCCGAA
GTAG
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Coding sequence (CDS) from alignment at chr5:384805..385758+

>NO05G01330.1 ID=NO05G01330.1|Name=NO05G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr5:384805..385758+ (Nannochloropsis oceanica)
ATGCCTCGATTCACGAGGGCCTGGGCGATGTCCCTCCTCGTCGTTGCTCC
CACGCTGGCCGTGGCCTTTGCTGCAGGTCACTCTGCATCATCGCCCTCGA
CTTCGCGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGTACCACA
CAGGACCGTCCCGTCAAGATGCACAGGGGCCTGCAAAAGCGGACGAGTTT
CGTGATCCTTGAAGAGTTCGCACACGACCCTGAGGCGTTCACACAAGGGC
TGGTCTACGAGGATGACGGTACCCTCCTAGAAGGCACTGGGCTGTACGGC
AAGTCCAAATTGCGGCGAGTAAATGCTAAGACGGGCGAGGTGATGGCGTC
GGAAGAGATCGACAAGCGGTACTTTGGGGAGGGTATCGTGGCGGTGGACG
ACAAGATCATTCAGATCACCTGGAAAGAACGCAAAGCTCTGGTGTATGGT
CGCCAAAACCTGACGTTGCTCTACGACTTTATCTACGACACGAGCAACCA
TGAAGGATGGGGTATCACTACGGATGGAGATCGTCTGATTGTGTCCGACG
GCTCGTCGAATTTGCATTTCTGGGACAAAACCACTTACCAAGAAATTCCC
AATTCGCGCTTGCGTGTCGAAGACGGCTTTGGAAAAGCCGTGAATCACTT
GAATGAGTTGGAATATGCCTATGGTTATGTGTGGGCGAACATCTGGTTGG
CAGATGATATAGTTCAGATTGACCCGAGCACGGGCAAGGTGGTGGCGTTT
TACGATTTTTCTGTGCTGTATCCTCACACTCAACGGATGAGTGTCGACCA
GGTCCTTAACGGGATTGCATACGATTCGACCGAGGATGTTTTTTATTTGA
CGGGAAAGTGGTGGCCGAAATACTACAAAGTCAAGATGTGCATTGAGGAA
AACGCGGTGTGTGCGGCTGATGTAGGAGATGGGGAAACGTCGCCCCCGAA
GTAG
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Synonyms
Publications