NO05G01260.1, NO05G01260.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G01260.1
Unique Name	NO05G01260.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2006
Alignment location	chr5:358718..361293 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:358718..361293 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G01260.1 vs.
Match: EWM28191.1 (gtp cyclohydrolase i [Nannochloropsis gaditana])

HSP 1 Score: 389.8 bits (1000), Expect = 1.000e-104
Identity = 232/343 (67.64%), Postives = 261/343 (76.09%), Query Frame = 0

Query:   66 SVVNGNGITY-SCNGALSSRSKNISYDKLPPRSAAASAE-AAAAAAAAAAGAAAVARL------SPSIIKNSTNDGMMNGGGHYNHRHSGVCCHGPEEEDEDEDEVHSHQPNSSSGSSGTIPRGAEIRSTASDQRKGEKKEEDAFGQGPEGERLRRMSAAVRTLLECVGEDPDREGLRSTPMRMAKALLYCTKGYEQTVQGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFMGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSVTITSSVTGAFKSNAATRNEFFSLIKSGSSGFGR 401
            +V +GNGI   + N + S + +N+     P            AAAAAAAA AAAVARL      S S++ N ++     G    ++RH+G+CC G    DEDEDE  S     S   +G++  G E + TA  +     + ++  G   E ERLRRMSAAVRTLLECVGEDPDREGLR+TPMRMAKALLYCTKGY+QTV GVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPF+GKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGS TITSSVTGAFKSNAATR+EFFSLIKSG+ G+GR
Sbjct:    8 TVSHGNGILKKTSNNSTSRKDENVPCHATPATCGNGRFPFQTAAAAAAAAAAAAVARLPLSEAGSDSLLLNKSSGETARGQQQEHYRHNGICCRG---HDEDEDEEESVAEGGSGQRNGSVVHG-ENKLTAHGKHAQRAEGDEDSGGSSEEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLIKSGNGGYGR 346

The following BLAST results are available for this feature:

BLAST of NO05G01260.1 vs.

BLAST of NO05G01260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28191.1	1.000e-104	67.64	gtp cyclohydrolase i [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G01260	NO05G01260	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G01260.1	NO05G01260.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G01260.1.cds1	NO05G01260.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G01260.1.cds2	NO05G01260.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G01260.1.cds3	NO05G01260.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:358718..361293-
coding sequence from alignment at chr5:358718..361293-

mRNA sequence

>NO05G01260.1 ID=NO05G01260.1|Name=NO05G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2006bp
ACAGGCCCTTACGCGTTGTACGAAGCACTTCTAGGTTTTAAGGACTGCTT
TCTAGTCATCGACGTCAGCTTAATTGCGTCGCTCCCCCACCGCATCAACA
GATACTTTCGTTCCCACCACTCAATCGACGCCCCCCGGCCACTTGCACGC
CTGGATACCATGGCCTTGCCAATCTACGATGCGGATCAGCCAATGCCCAT
GACGGAATCTTCCTCTTCCTCTTCCTCCTCCTCGACCGGCTCTGAATCTC
TTGATGGCCCCTACGACGACGACGTGGTCGATATGCCACTCGCCCAAAAA
TGTGCTCTCGGTCATCCCATTGCCACCACGAACGCCAACGGCATTACCAG
CAGCAGCGTCGTGAATGGCAATGGCATCACATATTCCTGTAATGGAGCTC
TAAGCAGCAGAAGCAAGAACATCAGTTACGACAAGCTTCCCCCCCGCAGC
GCAGCAGCATCGGCAGAAGCAGCAGCAGCCGCCGCCGCCGCAGCAGCAGG
AGCTGCGGCTGTCGCGCGCTTATCACCATCAATTATAAAGAACAGTACCA
ACGATGGGATGATGAATGGCGGTGGACATTATAATCATAGACATAGCGGC
GTTTGTTGCCATGGACCCGAGGAGGAGGATGAGGACGAAGACGAGGTGCA
CTCACACCAACCAAATAGTAGCAGCGGCAGCAGCGGTACCATTCCACGGG
GAGCAGAGATCCGATCCACAGCGTCTGATCAACGAAAAGGAGAGAAGAAG
GAAGAGGACGCGTTTGGTCAAGGGCCGGAGGGGGAGAGATTGAGGCGGAT
GTCAGCTGCTGTAAGGACGTTGTTGGAGTGTGTCGGGGAAGACCCAGACA
GGGAGGGATTGCGGTCGACACCGATGAGGATGGCGAAGGCATTGTTATAT
TGTACGAAGGGATATGAGCAGACGGTTCAGGGAGTGGTGGGAGGAGCAGT
GTTCGAAGAAGACCACTCGGAGATGGTGGTTGTGAAGGACATTAACGTCT
TCTCTATGTGCGAGCACCACATGGTGCCTTTCATGGGCAAAGTCCACATA
GGCTACATCCCTCGGTCAAAGGTGTTGGGCTTGTCAAAACTGGCAAGAAT
TGCGGAAATGTACGCCAGGAGGCTTCAGATCCAGGAGAGATTGACCAAGC
AGATTGCTCAGGCGATTAATGAGGCGATCCAGCCACTGGGGGTCGCGGTG
GTCATTGAAGCCACGCACATGTGCATGGTCATGCGTGGCGTGGAGAAACC
TGGCTCGGTCACAATCACTTCTTCTGTGACGGGTGCCTTCAAGAGCAACG
CTGCTACGCGCAATGAGTTCTTCTCGCTGATAAAGTCAGGTAGCAGCGGG
TTTGGCCGATAGGTGAGGGAGGGAGGGAAGGTAACGGGAATGTGCAGGAC
GTGATTTAGCAGTGTATCACAGTGAATTTCTCTTCTTTGACATGCTTTTC
ATTGAGGTTTGGAGAGTCACTATTTCTTCGCGAAGAAGAGAGATTGGAAC
AGTGAGTCATCAGTAGTAGCACTTCCTCTTTTGAGTGGGCGTGTTTTTTG
CGGGGCAATAGTAGAAGCAGCAGCAACAGCAGGAGGAGTAGTGACAACCG
AGAGGGACGTGACAGAGTAAGAGTTCTTAATGAGTATGTAGTGGATGGAT
GGGTGTGAGGGTGAGTCGAACGCAAGATGGCAGAGGGGAGGAGTGAAAGT
CTCTAGCAACGTTGCCATGTCTGCACAACACCATAATCATGACGGGCAAG
CGCGCATTAAAAAATCTTGTCGGATGTACACTGTGTCCCGAGAAGGAATG
GGAAATAAAAGCGGATTCATGGGTGAAACAAACAAACAAACAGCGTTACA
GCGCGAGGAGCCTTGCAGGAAAAAGGCGCAAGCGCAACAAAGGAAATCTG
TGACACCCAAACGGAAAGAAGTCCGGTCACTAGGAAAAAATAAGGATGAC
TGACGTGCCAAAATCAGATGAAAACGTGCCGTCATTGCTGCTATTGCTTC
GTGTTG

protein sequence of NO05G01260.1

>NO05G01260.1-protein ID=NO05G01260.1-protein|Name=NO05G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MALPIYDADQPMPMTESSSSSSSSSTGSESLDGPYDDDVVDMPLAQKCAL
GHPIATTNANGITSSSVVNGNGITYSCNGALSSRSKNISYDKLPPRSAAA
SAEAAAAAAAAAAGAAAVARLSPSIIKNSTNDGMMNGGGHYNHRHSGVCC
HGPEEEDEDEDEVHSHQPNSSSGSSGTIPRGAEIRSTASDQRKGEKKEED
AFGQGPEGERLRRMSAAVRTLLECVGEDPDREGLRSTPMRMAKALLYCTK
GYEQTVQGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFMGKVHIGYI
PRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIE
ATHMCMVMRGVEKPGSVTITSSVTGAFKSNAATRNEFFSLIKSGSSGFGR
*

mRNA from alignment at chr5:358718..361293-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G01260.1 ID=NO05G01260.1|Name=NO05G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp|location=Sequence derived from alignment at chr5:358718..361293- (Nannochloropsis oceanica)
ACAGGCCCTTACGCGTTGTACGAAGCACTTCTAGGTTTTAAGGACTGCTT
TCTAGTCATCGACGTCAGCTTAATTGCGTCGCTCCCCCACCGCATCAACA
GATACTTTCGTTCCCACCACTCAATCGACGCCCCCCGGCCACTTGCACGC
CTGGATACCATGGCCTTGCCAATCTACGATGCGGATCAGCCAATGCCCAT
GACGGTACGTTTATTTCTAGGTTTCTAGCAAGCGTGTGGTGCGGATAAGC
AGATGTCGAAAGTGCAGGGCAATGAGCTTGCGGCGATCTCATTGGTCCTC
ATTTATGCCCCTGGGCGATGCGCAACACCGTGTCTATCTCATCCAAGCCT
TGTCATGGCATCACCACATTCACTGCTTGTATGAGACAATTGGTATGTGG
TCCGTGTTTTGGTTCGTCTTAAATCGGTCAACAAGAGAGATCCAGTCCAA
CCCTAGGACACAAACCCCCAGCACGTTTGATCCGCCATTTTTACTCATCT
ACGCCCCTATCACATGTATACACTCCCAGGAATCTTCCTCTTCCTCTTCC
TCCTCCTCGACCGGCTCTGAATCTCTTGATGGCCCCTACGACGACGACGT
GGTCGATATGCCACTCGCCCAAAAATGTGCTCTCGGTCATCCCATTGCCA
CCACGAACGCCAACGGCATTACCAGCAGCAGCGTCGTGAATGGCAATGGC
ATCACATATTCCTGTAATGGAGCTCTAAGCAGCAGAAGCAAGAACATCAG
TTACGACAAGCTTCCCCCCCGCAGCGCAGCAGCATCGGCAGAAGCAGCAG
CAGCCGCCGCCGCCGCAGCAGCAGGAGCTGCGGCTGTCGCGCGCTTATCA
CCATCAATTATAAAGAACAGTACCAACGATGGGATGATGAATGGCGGTGG
ACATTATAATCATAGACATAGCGGCGTTTGTTGCCATGGACCCGAGGAGG
AGGATGAGGACGAAGACGAGGTGCACTCACACCAACCAAATAGTAGCAGC
GGCAGCAGCGGTACCATTCCACGGGGAGCAGAGATCCGATCCACAGCGTC
TGATCAACGAAAAGGAGAGAAGAAGGAAGAGGACGCGTTTGGTCAAGGGC
CGGAGGGGGAGAGATTGAGGCGGATGTCAGCTGCTGTAAGGACGTTGTTG
GAGTGTGTCGGGGAAGACCCAGACAGGGAGGGATTGCGGTCGACACCGAT
GAGGATGGCGAAGGCATTGTTATATTGTACGAAGGGATATGAGCAGACGG
TTCAGGGAGTGGTGGGAGGAGCAGTGTTCGAAGAAGACCACTCGGAGATG
GTGGTTGTGAAGGACATTAACGTCTTCTCTATGTGCGAGCACCACATGGT
GCCTTTCATGGGCAAAGTCCACATAGGCTACATCCCTCGGTCAAAGGTGT
TGGGCTTGTCAAAACTGGCAAGAATTGCGGAAATGTACGCCAGGAGGCTT
CAGATCCAGGAGAGATTGACCAAGCAGATTGCTCAGGCGATTAATGAGGC
GATCCAGCCACTGGGGGTCGCGGTGGTCATTGAAGCCACGTAAGTGATAC
GAGCGAGGGGATGCGAAGGAAAGGGTGTAGCATTTTCGTATCCGAGCGTT
GGTTTCCAGTGTAAATGAAGGCCATCCTTTATCCTTGATTTGTCTCTTAC
TTGACCGTCTCTTCCCCCCCCTCCCCCCCCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTTCCACCTCATTCCCTCTCTCCAGGCACATGTGCATGGTC
ATGCGTGGCGTGGAGAAACCTGGCTCGGTCACAATCACTTCTTCTGTGAC
GGGTGCCTTCAAGAGCAACGCTGCTACGCGCAATGAGTTCTTCTCGCTGA
TAAAGTCAGGTAGCAGCGGGTTTGGCCGATAGGTGAGGGAGGGAGGGAAG
GTAACGGGAATGTGCAGGACGTGATTTAGCAGTGTATCACAGTGAATTTC
TCTTCTTTGACATGCTTTTCATTGAGGTTTGGAGAGTCACTATTTCTTCG
CGAAGAAGAGAGATTGGAACAGTGAGTCATCAGTAGTAGCACTTCCTCTT
TTGAGTGGGCGTGTTTTTTGCGGGGCAATAGTAGAAGCAGCAGCAACAGC
AGGAGGAGTAGTGACAACCGAGAGGGACGTGACAGAGTAAGAGTTCTTAA
TGAGTATGTAGTGGATGGATGGGTGTGAGGGTGAGTCGAACGCAAGATGG
CAGAGGGGAGGAGTGAAAGTCTCTAGCAACGTTGCCATGTCTGCACAACA
CCATAATCATGACGGGCAAGCGCGCATTAAAAAATCTTGTCGGATGTACA
CTGTGTCCCGAGAAGGAATGGGAAATAAAAGCGGATTCATGGGTGAAACA
AACAAACAAACAGCGTTACAGCGCGAGGAGCCTTGCAGGAAAAAGGCGCA
AGCGCAACAAAGGAAATCTGTGACACCCAAACGGAAAGAAGTCCGGTCAC
TAGGAAAAAATAAGGATGACTGACGTGCCAAAATCAGATGAAAACGTGCC
GTCATTGCTGCTATTGCTTCGTGTTG

Coding sequence (CDS) from alignment at chr5:358718..361293-

>NO05G01260.1 ID=NO05G01260.1|Name=NO05G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr5:358718..361293- (Nannochloropsis oceanica)
ATGGCCTTGCCAATCTACGATGCGGATCAGCCAATGCCCATGACGGAATC
TTCCTCTTCCTCTTCCTCCTCCTCGACCGGCTCTGAATCTCTTGATGGCC
CCTACGACGACGACGTGGTCGATATGCCACTCGCCCAAAAATGTGCTCTC
GGTCATCCCATTGCCACCACGAACGCCAACGGCATTACCAGCAGCAGCGT
CGTGAATGGCAATGGCATCACATATTCCTGTAATGGAGCTCTAAGCAGCA
GAAGCAAGAACATCAGTTACGACAAGCTTCCCCCCCGCAGCGCAGCAGCA
TCGGCAGAAGCAGCAGCAGCCGCCGCCGCCGCAGCAGCAGGAGCTGCGGC
TGTCGCGCGCTTATCACCATCAATTATAAAGAACAGTACCAACGATGGGA
TGATGAATGGCGGTGGACATTATAATCATAGACATAGCGGCGTTTGTTGC
CATGGACCCGAGGAGGAGGATGAGGACGAAGACGAGGTGCACTCACACCA
ACCAAATAGTAGCAGCGGCAGCAGCGGTACCATTCCACGGGGAGCAGAGA
TCCGATCCACAGCGTCTGATCAACGAAAAGGAGAGAAGAAGGAAGAGGAC
GCGTTTGGTCAAGGGCCGGAGGGGGAGAGATTGAGGCGGATGTCAGCTGC
TGTAAGGACGTTGTTGGAGTGTGTCGGGGAAGACCCAGACAGGGAGGGAT
TGCGGTCGACACCGATGAGGATGGCGAAGGCATTGTTATATTGTACGAAG
GGATATGAGCAGACGGTTCAGGGAGTGGTGGGAGGAGCAGTGTTCGAAGA
AGACCACTCGGAGATGGTGGTTGTGAAGGACATTAACGTCTTCTCTATGT
GCGAGCACCACATGGTGCCTTTCATGGGCAAAGTCCACATAGGCTACATC
CCTCGGTCAAAGGTGTTGGGCTTGTCAAAACTGGCAAGAATTGCGGAAAT
GTACGCCAGGAGGCTTCAGATCCAGGAGAGATTGACCAAGCAGATTGCTC
AGGCGATTAATGAGGCGATCCAGCCACTGGGGGTCGCGGTGGTCATTGAA
GCCACGCACATGTGCATGGTCATGCGTGGCGTGGAGAAACCTGGCTCGGT
CACAATCACTTCTTCTGTGACGGGTGCCTTCAAGAGCAACGCTGCTACGC
GCAATGAGTTCTTCTCGCTGATAAAGTCAGGTAGCAGCGGGTTTGGCCGA
TAG

Synonyms

Publications