|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:269678..272110 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00870.1 vs.
Match: EWM28239.1 (endothelial monocyte-activating polypeptide ii precursor pro-emap ii family protein [Nannochloropsis gaditana]) HSP 1 Score: 464.2 bits (1193), Expect = 3.800e-127 Identity = 252/366 (68.85%), Postives = 290/366 (79.23%), Query Frame = 0
Query: 1 MKWLVLACVVIMLLRSVSGFTTRTLTPSTRKMTPMASR----TAHGFSRSSSRGRAKNGGIVRVPFLNQGLAKAAHTRLFSTTEDANPAPAAAAAADDAELQTL---WLDDRKTALRLSW---PPSSIPASSFSYRVSYTRDGIPNQVTAGGGSEDVVLRGLEGGSVYEVAVVRVEGESLKETMVGKTKVETAKAPEAPKGELTELSRLEIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPVKSGMKGSIS 357
MK +VL C ++MLLRS S FTTR L T+K A + T HG S + R ++ GI RVPFLNQGLA+AAHTRLFSTTED AP+ +A+ + EL L W D KT+LR+SW P S+ P S +YR+ Y+RDG+PN++T GG S + ++RGL GS Y+VAVVRVE E L E +VG+ ++ET K EAPKGELTELSRLEIRTGKI+E+SRHPEADGLYVEKIDLGE G RTIVSGLVKYQTEE+LLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVV PLSPP GVA+GELITFEGH AAPEPPGNRAGKAFDRVA++L AGEDM+ATYKGIPFMTSKGPV +GM GSIS
Sbjct: 1 MKRIVLMCALVMLLRSASAFTTRALVSGTQKSRMTARKALSVTRHGSSLTRKR---RHQGIDRVPFLNQGLAQAAHTRLFSTTED-TAAPSTTSASTEEELPQLLLHWSDSAKTSLRVSWTDTPSSTTP--SHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00870.1 ID=NO05G00870.1|Name=NO05G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp AACAGGGCGACGGCAACGAAGAAGACAAAGAGAAGCTTGAGATGAAGTGG CTGGTGTTGGCGTGCGTCGTAATCATGTTGCTGCGTAGTGTTTCGGGCTT TACCACGCGGACACTCACGCCCAGCACTCGCAAAATGACTCCCATGGCCT CCAGGACTGCCCATGGCTTCTCCCGCTCAAGCAGCAGGGGAAGGGCCAAG AACGGTGGGATTGTGCGCGTACCGTTCTTGAATCAAGGTCTGGCCAAGGC GGCGCACACTAGGTTGTTCAGCACCACGGAGGACGCTAATCCTGCTCCGG CTGCTGCAGCCGCGGCGGACGATGCTGAGCTGCAAACCCTCTGGCTCGAT GACAGGAAGACAGCATTACGCCTGTCGTGGCCCCCCTCCTCCATCCCTGC CTCGTCGTTCTCGTACCGCGTCAGCTACACGCGCGATGGGATACCAAATC AAGTGACTGCAGGAGGGGGTTCGGAAGATGTAGTGTTGCGAGGGCTGGAG GGAGGGAGCGTTTATGAAGTAGCGGTAGTGCGGGTGGAAGGAGAGTCATT GAAGGAGACGATGGTGGGAAAGACCAAGGTGGAGACGGCTAAGGCACCTG AGGCCCCCAAAGGGGAATTAACCGAGCTCTCTCGCCTCGAGATCCGCACG GGCAAGATCGTGGAGGTTAGCCGACACCCCGAAGCGGATGGTTTGTACGT GGAGAAGATTGATCTGGGAGAACCCTCCGGAGCCCGCACCATTGTCTCCG GCCTGGTGAAATATCAAACAGAAGAGCAATTGCTCGGACGGGAGGTCGTC GTCCTGGCCAACCTCAAGCCCCGTGCTCTGAAAGGCATCACATCCCACGG CATGCTGCTGTGCGCTAGCAACGAAGATCACACCGTCGTCATGCCTCTCT CGCCCCCTGCTGGCGTGGCAGTGGGGGAGCTGATTACCTTCGAAGGCCAC GTGGCGGCACCAGAGCCCCCAGGAAATAGAGCGGGAAAGGCCTTTGATCG CGTAGCGGACGATCTTTCTGCGGGGGAGGACATGGTTGCCACTTACAAGG GCATTCCCTTTATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAGGGC AGCATCTCCTAACCGATGAGAAGGGACGAGTGGGATGAAGGGCAGCATCT CCTAACTGATGAGAAGGGACGAGTGGGATG back to topprotein sequence of NO05G00870.1 >NO05G00870.1-protein ID=NO05G00870.1-protein|Name=NO05G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp MKWLVLACVVIMLLRSVSGFTTRTLTPSTRKMTPMASRTAHGFSRSSSRG RAKNGGIVRVPFLNQGLAKAAHTRLFSTTEDANPAPAAAAAADDAELQTL WLDDRKTALRLSWPPSSIPASSFSYRVSYTRDGIPNQVTAGGGSEDVVLR GLEGGSVYEVAVVRVEGESLKETMVGKTKVETAKAPEAPKGELTELSRLE IRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGR EVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITF EGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPVKSG MKGSIS* back to topmRNA from alignment at chr5:269678..272110+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00870.1 ID=NO05G00870.1|Name=NO05G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at chr5:269678..272110+ (Nannochloropsis oceanica) AACAGGGCGACGGCAACGAAGAAGACAAAGAGAAGCTTGAGATGAAGTGG
CTGGTGTTGGCGTGCGTCGTAATCATGTTGCTGCGTAGTGTTTCGGGTAA
GTGCAATTCGTGTGCTGCTTGTGATGATCAGGATCGAGGAAGGGATGACT
CATTGCCGTATTATGCGCCGCTGCCGCTACCACTGATTCTGCAGCCGCGG
TTGCAGAGTTTGTCTGTTACCATACTACGAAGAGGTCGACTTGTTCACAC
TCCTCTGCGTTGTTATCTCGTCCTCTGACGAGCATCGTCATGATGACTCG
ATCGATCATTCCACTAAGTGCAAATCACCCCCTTTCCCTAATTCCATCCT
GTCCTTTCCTGTCAAGGCTTTACCACGCGGACACTCACGCCCAGCACTCG
CAAAATGACTCCCATGGCCTCCAGGACTGCCCATGGCTTCTCCCGCTCAA
GCAGCAGGGGAAGGGCCAAGAACGGTGGGATTGTGCGCGTACCGTTCTTG
AATCAAGGTCTGGCCAAGGCGGCGCACACTAGGTTGTTCAGCACCACGGA
GGACGCTAATCCTGCTCCGGCTGCTGCAGCCGCGGCGGACGATGCTGAGG
TAGGTTGATGAGAGGGAGGGAAGTGTGTGTATGCCTCTGTTTGTATATAT
ATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGTG
ATGTACGAGGGTGTATGGTACGTTCTTTTTCGCCTGTGGTAGTTCCATAT
TCGGTCGCTCCTATCGTACGTCCTCCAACAAAGCCCGCTCCTCCTCCTCC
TTCTCCTCCTCCTTCTCCTCCTCCTTCTCCTCCTCTTCCCGCCTATAGCT
GCAAACCCTCTGGCTCGATGACAGGAAGACAGCATTACGCCTGTCGTGGC
CCCCCTCCTCCATCCCTGCCTCGTCGTTCTCGTACCGCGTCAGCTACACG
CGCGATGGGATACCAAATCAAGTGACTGCAGGAGGGGGTTCGGAAGATGT
AGTGTTGCGAGGGCTGGAGGGAGGGAGCGTTTATGAAGTAGCGGTAGTGC
GGGTGGAAGGAGAGTCATTGAAGGAGACGATGGTGGGAAAGACCAAGGTG
GAGACGGCTAAGGTACATAGATTGATTGCCTGCATGCCAGGGAGTATTAA
GAGCGAGGAGAGGAAGATGCGGGAGTCAATGTGGGCAAAATGCTCTCGCT
TCTGGTTGCCTTTTGTATGTCTCTCTCATTATGTATTTATGGCTTTGGAT
ACATCCCTGTTTATTTTCTGTCATCCGTTTTTCATGCCTTTCGGAAGCTC
GCGAAGTGTGACTCGATGAATATCACTAAGCCACCAATCATCCACTCTTT
GGAACCCCTCCAACAGGCACCTGAGGCCCCCAAAGGGGAATTAACCGAGC
TCTCTCGCCTCGAGATCCGCACGGGCAAGATCGTGGAGGTTAGCCGACAC
CCCGAAGCGGATGGTTTGTACGTGGAGAAGATTGATCTGGGGTGAGTTTA
TTTGGTCATTGATTTTAAGCACTTTGTAATTTTAATGTTTTGATGCTGGC
GTTATCATAAGTTGGTGGATTTGTCACGATTAACACAGCCCTCCCTCCCT
CCCTCCCAACCTCCTCCCCCCCCCCCCCAGAGAACCCTCCGGAGCCCGCA
CCATTGTCTCCGGCCTGGTGAAATATCAAACAGAAGAGCAATTGCTCGGA
CGGGAGGTCGTCGTCCTGGCCAACCTCAAGCCCCGTGCTCTGAAAGGTAC
GTGTCACCCCTTCCCTCCCTCCCCACCTTCCGGCCCTCTGGGCATTAACC
CTCTTTGTTCCCTCCCTCCCTCCCTTCCTCGCTCGTTCCTCCTTCCCAGG
CATCACATCCCACGGCATGCTGCTGTGCGCTAGCAACGAAGATCACACCG
TCGTCATGCCTCTCTCGCCCCCTGCTGGCGTGGCAGTGGGGGAGCTGATT
ACCTTCGAAGGCCACGTGGCGGCACCAGAGCCCCCAGGAAATAGAGCGGG
AAAGGCCTTTGATCGCGTAGCGGACGATCTTTCTGCGGGGGAGGTGCGTC
TTCCGTTTCTTTTGATTTGATTTTTAAAAAAATTGTCTGGGCTTCTCATG
TATAAATGTAAATTGCCTTTTTCAGATAGTTTCATTCTTCGTCTCGCTTT
AATCGATCTACCTCCCTCGCTGCCCTAGGGTATGGTTGACTCTTACCGTC
TTATTGGTGATGAGCTTTCCATTCTTCTTTTCTATTCTCACCCGCCCTCT
CTCCCTCTCTTCCTCCCTCCTTCCTTCCTAGGACATGGTTGCCACTTACA
AGGGCATTCCCTTTATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAG
GGCAGCATCTCCTAACCGATGAGAAGGGACGAGTGGGATGAAGGGCAGCA
TCTCCTAACTGATGAGAAGGGACGAGTGGGATG back to topCoding sequence (CDS) from alignment at chr5:269678..272110+ >NO05G00870.1 ID=NO05G00870.1|Name=NO05G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr5:269678..272110+ (Nannochloropsis oceanica) ATGAAGTGGCTGGTGTTGGCGTGCGTCGTAATCATGTTGCTGCGTAGTGT TTCGGGCTTTACCACGCGGACACTCACGCCCAGCACTCGCAAAATGACTC CCATGGCCTCCAGGACTGCCCATGGCTTCTCCCGCTCAAGCAGCAGGGGA AGGGCCAAGAACGGTGGGATTGTGCGCGTACCGTTCTTGAATCAAGGTCT GGCCAAGGCGGCGCACACTAGGTTGTTCAGCACCACGGAGGACGCTAATC CTGCTCCGGCTGCTGCAGCCGCGGCGGACGATGCTGAGCTGCAAACCCTC TGGCTCGATGACAGGAAGACAGCATTACGCCTGTCGTGGCCCCCCTCCTC CATCCCTGCCTCGTCGTTCTCGTACCGCGTCAGCTACACGCGCGATGGGA TACCAAATCAAGTGACTGCAGGAGGGGGTTCGGAAGATGTAGTGTTGCGA GGGCTGGAGGGAGGGAGCGTTTATGAAGTAGCGGTAGTGCGGGTGGAAGG AGAGTCATTGAAGGAGACGATGGTGGGAAAGACCAAGGTGGAGACGGCTA AGGCACCTGAGGCCCCCAAAGGGGAATTAACCGAGCTCTCTCGCCTCGAG ATCCGCACGGGCAAGATCGTGGAGGTTAGCCGACACCCCGAAGCGGATGG TTTGTACGTGGAGAAGATTGATCTGGGAGAACCCTCCGGAGCCCGCACCA TTGTCTCCGGCCTGGTGAAATATCAAACAGAAGAGCAATTGCTCGGACGG GAGGTCGTCGTCCTGGCCAACCTCAAGCCCCGTGCTCTGAAAGGCATCAC ATCCCACGGCATGCTGCTGTGCGCTAGCAACGAAGATCACACCGTCGTCA TGCCTCTCTCGCCCCCTGCTGGCGTGGCAGTGGGGGAGCTGATTACCTTC GAAGGCCACGTGGCGGCACCAGAGCCCCCAGGAAATAGAGCGGGAAAGGC CTTTGATCGCGTAGCGGACGATCTTTCTGCGGGGGAGGACATGGTTGCCA CTTACAAGGGCATTCCCTTTATGACGAGCAAGGGACCGGTGAAGAGTGGG ATGAAGGGCAGCATCTCCTAA back to top
|