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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:237541..239100 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00730.1 vs.
Match: EWM28318.1 (Ribosomal protein S7, conserved site [Nannochloropsis gaditana]) HSP 1 Score: 386.0 bits (990), Expect = 1.000e-103 Identity = 201/211 (95.26%), Postives = 204/211 (96.68%), Query Frame = 0
Query: 66 EAEAAVPFE-TDMAVGFEDNTADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLMANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 276
E + VP+E DMAV FEDN+ADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKL ANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR
Sbjct: 5 EIDETVPYEPADMAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00730.1 ID=NO05G00730.1|Name=NO05G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp ATGTCTGTGGTGCTGAATGATTTTGGATGCCTTGTGGTGGACAAGCGTGG CTGCCATTCGTCTGAGCATCAGGAGGGGGAGGAGGCCTCATCGCCTAATC GACTCCTGCCTTTGGCCATCCACCAGCAGCCAACAGCGCCCACGTACCAA GACGAGACAGTAGTCACTATGGCTGACGAGATTGTTCCTTTCGACGAGGC CGAGGCCGCCGTGCCCTTCGAAACCGACATGGCTGTGGGGTTCGAGGACA ACACGGCCGACATCAAGCTCTTCGGCAAATGGAGCCTGTCCGACGTCGAG ATCAAGGACTTGTCCCTGGAGGACTACATTGGCGTGAATGGCAAGTGCGC CACCTACCTCCCTCACACGGCGGGCCGCTACCAAAAGAAGCGCTTTCGCA AGGCGCAGTGCCCCGTGGTGGAACGGTTGGCGAACTCGCTTATGCGCAAG GGCCGCAACAGCGGGAAAAAGCTCATGGCTAACCGGATCGTGAAGCACAC CCTCGAGATTATTCACCTCCTGACGGATCAGAACCCGGTGCAGGTGGTGG TGGACAGCATTATCAATGCCGGTCCTCGGGAGGACTCGACCCGGGTGGGT TCTGCCGGTGTGGTGCGACGACAAGCCGTTGATATGTCTCCCTTCCGCCG TGTTAACCAGGCCATCTACCTGATCACCACGGGCGCGCGCGAGTCGAGCT TTAGGAACATTAAGACGATTGCCGAGACGTTGGCGGATGAGATCATTAAC GCCGCTAAGGGGAGCTCCAACAGTTATGCCATTAAGAAGAAGGACGAGGT GGAGCGTGTCGCCAAGGCGAACAGATAAACAATCAGTGGGAGGAAGGGAG AGGGAGGAAGGGTACATGGACGGGAAGAAGGAAGGGGTGTGATGCGCAGG CTGTTGATTCGAGGAAGAGCAGCAGACTGGAGGGATGGAGGAAAGGAGGG AGAGAGAGAGAGAGGGAGCAGGTGTGAAAGGAGAAGATGGTTTATCTACG ATTTCTTTCGTATTTCGGTTCGTCTCTTAATGGTTCTCCTCCATCTCCTT TCATGGGGGAGGGAGGAAGGGAGGGAAGGAGGGGGAGAGGGAAGATGGAG GAATCATAGGCATCGAACCTGGACGCAACTCTCTTGTGGGGGTGATGAGG GAGGGAGGGAGAGAGGGAGGGAGAGAGGGAGGGAG back to topprotein sequence of NO05G00730.1 >NO05G00730.1-protein ID=NO05G00730.1-protein|Name=NO05G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp MSVVLNDFGCLVVDKRGCHSSEHQEGEEASSPNRLLPLAIHQQPTAPTYQ DETVVTMADEIVPFDEAEAAVPFETDMAVGFEDNTADIKLFGKWSLSDVE IKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRK GRNSGKKLMANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVG SAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIIN AAKGSSNSYAIKKKDEVERVAKANR* back to topmRNA from alignment at chr5:237541..239100+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00730.1 ID=NO05G00730.1|Name=NO05G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp|location=Sequence derived from alignment at chr5:237541..239100+ (Nannochloropsis oceanica) ATGTCTGTGGTGCTGAATGATTTTGGATGCCTTGTGGTGGACAAGCGTGG
CTGCCATTCGTCTGAGCATCAGGAGGGGGAGGAGGCCTCATCGCCTAATC
GACTCCTGCCTTTGGCCATCCACCAGCAGCCAACAGCGCCCACGTACCAA
GACGAGACGTACGCTTACGCATGGATTATGTTGCCTGCAGTGGGATAGCG
GCTGGTGGAAAAAGAGGATGCCGGGGTTGAGAGCTGAGGCAACTTGCGCA
GCGCTAGACCCAAAAGAAGGACATGGGGGGTGTTGGACACTCACAAAAAC
TCTCCCCACATAATCCCCACAACGACCACAGAGTAGTCACTATGGCTGAC
GAGATTGTTCCTTTCGACGAGGCCGAGGCCGCCGTGCCCTTCGAAACCGA
CATGGCTGTGGGGTTCGAGGACAACACGGCCGACATCAAGCTCTTCGGCA
AATGGTACGTGGATGACGATTAAGCTTTCCCGCAGCGCCCAATCCTTCTT
GCATCCTCCCGTGTTCCATCTATGTAACAAGCCTTTGAGCATGTGGCCGT
ATTGTACTCGAGCTAGCTGGTTGCGCCGCAGCCAAAGCTTTCGCTTCTAT
TGCTTGTAATTCCGCCTCGTTCTCATCCCAATCCATGCCCATTCCTCCCT
CTGCAGGAGCCTGTCCGACGTCGAGATCAAGGACTTGTCCCTGGAGGACT
ACATTGGCGTGAATGGCAAGTGCGCCACCTACCTCCCTCACACGGCGGGC
CGCTACCAAAAGAAGCGCTTTCGCAAGGCGCAGTGCCCCGTGGTGGAACG
GTTGGCGAACTCGCTTATGCGCAAGGGCCGCAACAGCGGGAAAAAGCTCA
TGGCTAACCGGATCGTGAAGCACACCCTCGAGATTATTCACCTCCTGACG
GATCAGAACCCGGTGCAGGTGGTGGTGGACAGCATTATCAATGCCGGTCC
TCGGGAGGACTCGACCCGGGTGGGTTCTGCCGGTGTGGTGCGACGACAAG
CCGTTGATATGTCTCCCTTCCGCCGTGTTAACCAGGCCATCTACCTGATC
ACCACGGGCGCGCGCGAGTCGAGCTTTAGGAACATTAAGACGATTGCCGA
GACGTTGGCGGATGAGATCATTAACGCCGCTAAGGGGAGCTCCAACAGTT
ATGCCATTAAGAAGAAGGACGAGGTGGAGCGTGTCGCCAAGGCGAACAGA
TAAACAATCAGTGGGAGGAAGGGAGAGGGAGGAAGGGTACATGGACGGGA
AGAAGGAAGGGGTGTGATGCGCAGGCTGTTGATTCGAGGAAGAGCAGCAG
ACTGGAGGGATGGAGGAAAGGAGGGAGAGAGAGAGAGAGGGAGCAGGTGT
GAAAGGAGAAGATGGTTTATCTACGATTTCTTTCGTATTTCGGTTCGTCT
CTTAATGGTTCTCCTCCATCTCCTTTCATGGGGGAGGGAGGAAGGGAGGG
AAGGAGGGGGAGAGGGAAGATGGAGGAATCATAGGCATCGAACCTGGACG
CAACTCTCTTGTGGGGGTGATGAGGGAGGGAGGGAGAGAGGGAGGGAGAG
AGGGAGGGAG back to topCoding sequence (CDS) from alignment at chr5:237541..239100+ >NO05G00730.1 ID=NO05G00730.1|Name=NO05G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr5:237541..239100+ (Nannochloropsis oceanica) ATGTCTGTGGTGCTGAATGATTTTGGATGCCTTGTGGTGGACAAGCGTGG CTGCCATTCGTCTGAGCATCAGGAGGGGGAGGAGGCCTCATCGCCTAATC GACTCCTGCCTTTGGCCATCCACCAGCAGCCAACAGCGCCCACGTACCAA GACGAGACAGTAGTCACTATGGCTGACGAGATTGTTCCTTTCGACGAGGC CGAGGCCGCCGTGCCCTTCGAAACCGACATGGCTGTGGGGTTCGAGGACA ACACGGCCGACATCAAGCTCTTCGGCAAATGGAGCCTGTCCGACGTCGAG ATCAAGGACTTGTCCCTGGAGGACTACATTGGCGTGAATGGCAAGTGCGC CACCTACCTCCCTCACACGGCGGGCCGCTACCAAAAGAAGCGCTTTCGCA AGGCGCAGTGCCCCGTGGTGGAACGGTTGGCGAACTCGCTTATGCGCAAG GGCCGCAACAGCGGGAAAAAGCTCATGGCTAACCGGATCGTGAAGCACAC CCTCGAGATTATTCACCTCCTGACGGATCAGAACCCGGTGCAGGTGGTGG TGGACAGCATTATCAATGCCGGTCCTCGGGAGGACTCGACCCGGGTGGGT TCTGCCGGTGTGGTGCGACGACAAGCCGTTGATATGTCTCCCTTCCGCCG TGTTAACCAGGCCATCTACCTGATCACCACGGGCGCGCGCGAGTCGAGCT TTAGGAACATTAAGACGATTGCCGAGACGTTGGCGGATGAGATCATTAAC GCCGCTAAGGGGAGCTCCAACAGTTATGCCATTAAGAAGAAGGACGAGGT GGAGCGTGTCGCCAAGGCGAACAGATAA back to top
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