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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1495019..1498485 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05280.1 vs.
Match: CBN76648.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 99.0 bits (245), Expect = 4.700e-17 Identity = 74/186 (39.78%), Postives = 116/186 (62.37%), Query Frame = 0
Query: 106 VIRKGYPIKTTDLLDDRIRSKISVVDVECSPDLKSARVEVSIFGETVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAEEREALEREGGGEEWEEEWDEDDGEGGGSSEEEEEEEGLLKREEGYWSDDEGDSEASDGEVVWEDEDEEDEEDDKDIEWDEDDIE 292
++R G+ IKT D +DD +R +I+VVDV+ SPDL+SA+V +S++G+ +EKREAY W V N KAIR AL E+K + P+LFFK D+ A D+ +L+D+++ G E+ E DDGE EE E EG+ + ++ + D + D A+D ++D+D++DE+ D++ +E D E
Sbjct: 102 ILRLGHGIKTKDKIDDDVRCRIAVVDVDMSPDLRSAKVFISVYGDVLEKREAYAWCVKNTKAIRMALCAELKGMKRVPELFFKDTDISAAVDLMALIDRVS----------GDEDGNEAALRDDGE-----EEIEGFEGVTE-DDFFTFDFDEDGNAAD----FDDDDDDDEDVGFDLDEEERDGE 267
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G05280.1 ID=NO04G05280.1|Name=NO04G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1667bp ACCACAGGTCAAGCTTATCCTACAGTGACGGCAGGCCTTGCAGGAGCTCT CACCTGAGCAGTCGACCAGCCATGAGCGCACCAGCGGACCGCCTCCTATC GCCCGCCTTCTCTTGCAAGCGGCAAAGGAAGCGGATAGCATCAAGAGCCT ACACCACCGTCGCTCCCGCGACCGCTCTTCTTGCTCTCCTCGCAGTCATT CTCGTCCTCCAACCCGTCCAAATGCTAGTGTGGGCCTTCCTTCCCCCCGT CACAATCCCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCT CCTCCTCCATCAGCCGCTCCCCCCACCCTCGCCTCTGTTCCTCCCGTCCT CCCGTTTGTCTACCTTACATCTTGGCCCGCTCCGACGTAATTCGCAAGGG CTACCCCATCAAAACCACGGACCTGCTCGACGATCGGATCCGCAGCAAAA TTTCAGTGGTAGATGTCGAGTGTTCTCCGGACCTGAAGAGCGCACGCGTG GAGGTGTCCATCTTCGGCGAGACGGTGGAAAAACGCGAGGCCTACATCTG GTTAGTCAACAACGCCAAGGCCATCCGCTTTGCCCTGGCCCAGGAGATGA AGGACTTCAGACACACACCTCAGCTCTTTTTCAAGCAGGGTGACCTCGGC GCAGGCTCGGACATGTTCAGCCTCCTAGACAAGCTGGCGGAGGAGCGAGA GGCCCTCGAGAGGGAGGGCGGGGGGGAGGAATGGGAGGAGGAGTGGGACG AAGACGACGGGGAAGGAGGCGGCAGCAGTGAGGAAGAGGAGGAGGAGGAG GGGCTGCTGAAGCGCGAGGAAGGATATTGGAGCGACGACGAAGGGGACTC GGAGGCCAGCGACGGGGAAGTCGTGTGGGAGGATGAGGACGAAGAGGACG AGGAAGACGATAAAGACATCGAGTGGGACGAGGACGACATTGAATGGGAG GACGAAAAGGAAGAGAAGCAAGCCCCTCTCACTGCCGATGAACGGCGCAA ACAAATTAAGAAAGATCGCGAGGATGCCGAGGCCTTGATCGGTCTTTTGG AGCGGATGACCAGTCAGGCCATCGCCGAGGGGCCGCAGGGCAAGGAGGAA GAGAAGGGCGAGATCGTTGTTCCCCTCGTCCAGCGCAAGCAAAAGAAGAG GAAAACCGGTGCCTTCTCCTCCATTCCCTCCCGAGTCGATGTGGGAGGGG GAGGGCTGGGCGACAGGCCGGCCGGCTGGACGGCCTCGCAGCCCTACGTG CCCGGCGCCTTGGAGGCAGAGCTCGAGGCTGAGATTGAGGCCCTTCGTCT GGCTGGCGAGGAGGAGGAGAAGGGGGCGGGCATGGACGGGGAGGCCTGGG GGGAGGAGGACGACGATGATGAGGACGACGATGAGGACGACGAGGACTAT GAGGAGGAGGCCGGGTTGGGGGAGGAGGAGGAGGAGGAAGGGGAGGAGGG GGGGCTGATTGACTGGCCGGTGGAGGGGGAGGGCGAGGAGGAGGACTGGG GGGCCTTGACGGCGGACGGGTGGATAGACATGGACGCCATCTTGGACGAA GCGGAGGGCCAAGATGACATTGATGCCCTGCTCAAGAAGCTGGAGGGTAT GCCGGCCAGCGGGGAGGATGGCGACGAGGAGGATGACGGCGACAACGAGT TAGGGAGGAAGGGATAG back to topprotein sequence of NO04G05280.1 >NO04G05280.1-protein ID=NO04G05280.1-protein|Name=NO04G05280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp MSAPADRLLSPAFSCKRQRKRIASRAYTTVAPATALLALLAVILVLQPVQ MLVWAFLPPVTIPSSSSSSSSSSFSSSSSISRSPHPRLCSSRPPVCLPYI LARSDVIRKGYPIKTTDLLDDRIRSKISVVDVECSPDLKSARVEVSIFGE TVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFS LLDKLAEEREALEREGGGEEWEEEWDEDDGEGGGSSEEEEEEEGLLKREE GYWSDDEGDSEASDGEVVWEDEDEEDEEDDKDIEWDEDDIEWEDEKEEKQ APLTADERRKQIKKDREDAEALIGLLERMTSQAIAEGPQGKEEEKGEIVV PLVQRKQKKRKTGAFSSIPSRVDVGGGGLGDRPAGWTASQPYVPGALEAE LEAEIEALRLAGEEEEKGAGMDGEAWGEEDDDDEDDDEDDEDYEEEAGLG EEEEEEGEEGGLIDWPVEGEGEEEDWGALTADGWIDMDAILDEAEGQDDI DALLKKLEGMPASGEDGDEEDDGDNELGRKG* back to topmRNA from alignment at chr4:1495019..1498485- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G05280.1 ID=NO04G05280.1|Name=NO04G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3467bp|location=Sequence derived from alignment at chr4:1495019..1498485- (Nannochloropsis oceanica) ACCACAGGTCAAGCTTATCCTACAGTGACGGCAGGCCTTGCAGGAGCTCT
CACCTGAGCAGTCGACCAGCCATGAGCGCACCAGCGGACCGCCTCCTATC
GCCCGCCTTCTCTTGCAAGCGGCAAAGGAAGCGGATAGCATCAAGAGCCT
ACACCACCGTCGCTCCCGCGACCGCTCTTCTTGCTCTCCTCGCAGTCATT
CTCGTCCTCCAACCCGTCCAAATGCTAGTGTGGGCCTTCCTTCCCCCCGT
CACAATCCCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCT
CCTCCTCCATCAGCCGCTCCCCCCACCCTCGCCTCTGTTCCTCCCGTCCT
CCCGTTTGTCTACCTTACATCTTGGCCCGCTGTACGGTGGCAGGGATGAT
GAGAAGGCCTTTAGAAAGGTACAGCAAAGCAAGCGGCAGCTAAGGGTGGG
CCGTTTGTTGCAGTCCACGGTAGCCGACGTAATTCGCAAGGTATACATCG
AAGAGCGAGCGAGAGGGGAAGAGGGAGGGAGAGGAAAGATGGGAGGGAGC
AAGTCTTCTGATTGTCTGTTAAGACGTCTTCTGAATTGCAGCAGAAGAAA
TTGTCAAATTCGTCAACGCTAGTAATTCTTTCCTCCCTCCCTCCCACCCT
CCCTCCCTCCCTCCCTTCTTCCTCCTTTCACCCTCCTTTCATCTAGGGCT
ACCCCATCAAAACCACGGACCTGCTCGACGATCGGATCCGCAGCAAAATT
TCAGTGGTAGATGTCGAGTGTTCTCCGGACCTGAAGAGCGCACGCGTGGA
GGTGGGGCGGGAGGGAAAGAGATAGGGAGAGAGGGAGGGAGGGAGCGTGG
GTGAAGAGGCAAGAAAGGATGATGTCATCGAATGCCTCACGTGTGTCCCT
TCCTCATTCCCTGCTTCTCTCCCTCTCTCCGTAGGTGTCCATCTTCGGCG
AGACGGTGGAAAAACGCGAGGCCTACATCTGGTTAGTCAACAACGCCAAG
GTACAGAAGCCTTTTCCCTCCCCTCCCCCCTCCTTCCTTCCATGCCCCCT
TCCTTTCCTTCTCCACAGCAGGTTCTCACCTCCCCCCCGACCCTCCTCTC
TGTCTCTCTCTCCAGGCCATCCGCTTTGCCCTGGCCCAGGAGATGAAGGA
CTTCAGACACACACCTCAGCTCTTTTTCAAGCAGGGTGACCTCGGTACGT
CCCTCCCTGGCCCCCTCCCGCTAAGCCATCTCTCCGGCTCCTACGTCCTC
CCCTTCCCTCTTCCTCCTATTTCGTTTCTCGGTTACCTCTCCTCTCCTCG
GCCGTCGTCGCACTCACCTATGCCCATCTCCGCTCCCGCCCTCCCCCCGC
TCTCCCCCCTCCCTCCCCCCTCTTCCTCAGGCGCAGGCTCGGACATGTTC
AGCCTCCTAGACAAGCTGGCGGAGGAGCGAGAGGCCCTCGAGAGGGAGGG
CGGGGGGGAGGAATGGGAGGAGGAGTGGGACGAAGACGACGGTAAGGGAG
GGAGGGAGTGAGGGAGGGGGGGCGGAAGGAAGCGCGGGTGTATCTGCCTC
TTGGACGGAATCGAAGACTGTTGACGTTATCGCTGAATGTCGCTGTGTCT
GCCTCCTCCCTCTCTTATGTCGTCGTTGCTAGCTGTGTTTACCTCCTCCC
TCTTTTATCGTACCCGGCAGGGGAAGGAGGCGGCAGCAGTGAGGAAGAGG
AGGAGGAGGAGGGGCTGCTGAAGCGCGAGGAAGGATATTGGAGCGACGAC
GAAGGGGACTCGGAGGCCAGCGACGGGGAAGTCGTGTGGGAGGATGAGGA
CGAAGAGGACGAGGAAGACGATAAAGGTGCGTGCGTCCCTGTCGGTGGTC
CTGCGGGAGAGTTGGCTGCTTGTCCAGCAGGCCCGCCTTTCGTCCGCATC
CTGACCTCCCCTCTCTTCTTCCCTCTCTCCATTCCCTCCTCCCGGCAGAC
ATCGAGTGGGACGAGGACGACATTGAATGGGAGGACGAAAAGGAAGAGAA
GCAAGCCCCTCTCACTGCCGATGAACGGTCCGTCCCTCCCTCCCCCCCCC
CCTCCCTTCCTCCCTCCCTGGACTTATTTCCTTCCATTCCTGCTTCTCTC
CCCTCCTTCCTTCCTGCCTCCCTGCCTCCTCCAGGCGCAAACAAATTAAG
AAAGATCGCGAGGATGCCGAGGCCTTGATCGGTCTTTTGGAGCGGATGAC
CAGTCAGGCCATCGCCGAGGGGCCGCAGGGCAAGGAGGAAGAGAAGGGCG
AGGTATGTGGCTTCTGTGGTCCCTTTGTTGTTTGTATTTCATTCATTTTT
CCCTGTCCACCCCTTGTCTCTCTTCCTTCCCCTCTCTTCCTTCCTCCCGC
TTGTTTTCTTGGTCAAAGTACTCCCACCAGTCAACGCCTCGTCTCTCTCT
CCCTTCTCTCTCCCTCCCTTCCTCACTGCAGATCGTTGTTCCCCTCGTCC
AGCGCAAGCAAAAGAAGAGGAAAACCGGTGCCTTCTCCTCCATTCCCTCC
CGAGTCGATGTGGGAGGGGGAGGGCTGGGCGACAGGCCGGCCGGCTGGAC
GGCCTCGCAGCCCTACGTGCCCGGTGGGAAGAGAGGGAGAGGGAGGGAGG
GAGGGAAGGCAGGCGCAATGGCCTGATGATGTTGCTTTTGCTGTCTGTGG
CTTGTTCTCTGATCTTGTCTCCCTTCTTTCCCTTTCTCTCCCGCTTCGTC
CTCCTTCCCCCTCCCTCTCCCTCTAGGCGCCTTGGAGGCAGAGCTCGAGG
CTGAGATTGAGGCCCTTCGTCTGGCTGGCGAGGAGGAGGAGAAGGGGGCG
GGCATGGACGGGGAGGCCTGGGGGGAGGAGGACGACGATGATGAGGACGA
CGATGAGGACGACGAGGACTATGAGGAGGAGGCCGGGTTGGGGGAGGAGG
AGGAGGAGGAAGGGGAGGAGGGGGGGCTGATTGACTGGCCGGTGGAGGGG
GAGGGCGAGGAGGAGGACTGGGGGGCCTTGACGGCGGACGGGTGGATAGA
CATGGACGCCATCTTGGTACGAACGTGCGAGATAGACGAGAGTGGTGACA
CCTCGGCCCCTCCTTCCCTTACTATCTCCCTCCCTTCCTCCCCACCGTGT
TTACCTGCATGCTCGAACGAGGACAGGAGTGCCTTCTTCCCTTTCCTCCT
CCCTCTCTCCTCCGTTCTTTCGTCCGCTCTCCCTATTTGTTTCTTCTCCC
TCGCGTTTTCGTCTCTTTCAGGCTTCCTCGCTCCTTTTGTCGGCCCCGAC
TTATGCAGTGATCACGCCCCGTTCCCCAACCGCTCTCATCTCTTCCTCCC
TCCCTCCCTCCCTCCCTCCCTTCATCCTCCATGTCGTCGCCTAGGACGAA
GCGGAGGGCCAAGATGACATTGATGCCCTGCTCAAGAAGCTGGAGGGTAT
GCCGGCCAGCGGGGAGGATGGCGACGAGGAGGATGACGGCGACAACGAGT
TAGGGAGGAAGGGATAG back to topCoding sequence (CDS) from alignment at chr4:1495019..1498485- >NO04G05280.1 ID=NO04G05280.1|Name=NO04G05280.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr4:1495019..1498485- (Nannochloropsis oceanica) ATGAGCGCACCAGCGGACCGCCTCCTATCGCCCGCCTTCTCTTGCAAGCG GCAAAGGAAGCGGATAGCATCAAGAGCCTACACCACCGTCGCTCCCGCGA CCGCTCTTCTTGCTCTCCTCGCAGTCATTCTCGTCCTCCAACCCGTCCAA ATGCTAGTGTGGGCCTTCCTTCCCCCCGTCACAATCCCATCCTCCTCCTC CTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCATCAGCCGCTCCC CCCACCCTCGCCTCTGTTCCTCCCGTCCTCCCGTTTGTCTACCTTACATC TTGGCCCGCTCCGACGTAATTCGCAAGGGCTACCCCATCAAAACCACGGA CCTGCTCGACGATCGGATCCGCAGCAAAATTTCAGTGGTAGATGTCGAGT GTTCTCCGGACCTGAAGAGCGCACGCGTGGAGGTGTCCATCTTCGGCGAG ACGGTGGAAAAACGCGAGGCCTACATCTGGTTAGTCAACAACGCCAAGGC CATCCGCTTTGCCCTGGCCCAGGAGATGAAGGACTTCAGACACACACCTC AGCTCTTTTTCAAGCAGGGTGACCTCGGCGCAGGCTCGGACATGTTCAGC CTCCTAGACAAGCTGGCGGAGGAGCGAGAGGCCCTCGAGAGGGAGGGCGG GGGGGAGGAATGGGAGGAGGAGTGGGACGAAGACGACGGGGAAGGAGGCG GCAGCAGTGAGGAAGAGGAGGAGGAGGAGGGGCTGCTGAAGCGCGAGGAA GGATATTGGAGCGACGACGAAGGGGACTCGGAGGCCAGCGACGGGGAAGT CGTGTGGGAGGATGAGGACGAAGAGGACGAGGAAGACGATAAAGACATCG AGTGGGACGAGGACGACATTGAATGGGAGGACGAAAAGGAAGAGAAGCAA GCCCCTCTCACTGCCGATGAACGGCGCAAACAAATTAAGAAAGATCGCGA GGATGCCGAGGCCTTGATCGGTCTTTTGGAGCGGATGACCAGTCAGGCCA TCGCCGAGGGGCCGCAGGGCAAGGAGGAAGAGAAGGGCGAGATCGTTGTT CCCCTCGTCCAGCGCAAGCAAAAGAAGAGGAAAACCGGTGCCTTCTCCTC CATTCCCTCCCGAGTCGATGTGGGAGGGGGAGGGCTGGGCGACAGGCCGG CCGGCTGGACGGCCTCGCAGCCCTACGTGCCCGGCGCCTTGGAGGCAGAG CTCGAGGCTGAGATTGAGGCCCTTCGTCTGGCTGGCGAGGAGGAGGAGAA GGGGGCGGGCATGGACGGGGAGGCCTGGGGGGAGGAGGACGACGATGATG AGGACGACGATGAGGACGACGAGGACTATGAGGAGGAGGCCGGGTTGGGG GAGGAGGAGGAGGAGGAAGGGGAGGAGGGGGGGCTGATTGACTGGCCGGT GGAGGGGGAGGGCGAGGAGGAGGACTGGGGGGCCTTGACGGCGGACGGGT GGATAGACATGGACGCCATCTTGGACGAAGCGGAGGGCCAAGATGACATT GATGCCCTGCTCAAGAAGCTGGAGGGTATGCCGGCCAGCGGGGAGGATGG CGACGAGGAGGATGACGGCGACAACGAGTTAGGGAGGAAGGGATAG back to top
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