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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:1164290..1167385 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04310.1 vs.
Match: EWM28776.1 (membrane protein [Nannochloropsis gaditana]) HSP 1 Score: 658.3 bits (1697), Expect = 1.700e-185 Identity = 335/442 (75.79%), Postives = 359/442 (81.22%), Query Frame = 0
Query: 1 MAPNAELTRRQRPASNHPIKPSVAGMEKSSRSSSSESLSNSNSQQGISHLSQEAAKVKLIRDAIRAEDKRLRAAYPFPLGEHWQSAVGLFIYVAAWAAWGLATHAWWHGSLSMPALMVINALAISLLHEMEHDLIHELYFKRSPWVQHVMFAGIWLIKSNASPWWRKYYHLRHHQYSGQVNDVEERLIGLGLPWYSPKRLLVTLTPAGTLLVANDIARDDPEFSRFNLVLCNSPVIVLSTAAMLVHLVASLGGGEALVRAGLLSEGMFAMLSHRLLPALFLYNATVNFPNVLRQSCLVIISTYCHYYGDIPERDVFFQTQILDHPFLWPLQLFCFNFGATHIIHHFVTRQPFYLRQVVAFGVLPLMKAQGCRHNDMSNNFRGNRWAGGEDAVDHEEETTTLTGIKGRAGKGGNGGMGGASSTDTSPTTSDDEDGAEDHIKGA 443
M PNAEL +RQ P S K + + ++ S S+ S S GISHLSQEA KVK IRDAIRAEDKRLRAAYPFPLGEHWQS VGL IYV +W WG+AT+AWW G LS+P LMV+NALAISLLHEMEHDLIHELYFKR PWVQHVMF GIWLIKSNASPWWRKYYHLRHHQYSGQVNDVEERLIGLGL W+SPKRLLVTLTPAGTLLVANDIARDDPEFSR NLVL NSPVIVLSTAAMLVHL+ + GG ALV+AG+LS + A LS R+LPALFLYNA VNFPNVLRQSCLVIISTYCHYYGDIPERDVFFQTQILDHP LWP QLFCFNFGATHIIHHFVTRQPFYLRQV AF VLP+MKA GCRHNDM NNFRGNRW GGE AVD + E + G + G T T+P TSDDED E+HIKGA
Sbjct: 1 MTPNAELKQRQLPESQKTTKSKLLDPARKGATTVS-SVKRSASPTGISHLSQEAGKVKTIRDAIRAEDKRLRAAYPFPLGEHWQSVVGLAIYVGSWVVWGIATYAWWTGGLSLPVLMVVNALAISLLHEMEHDLIHELYFKRQPWVQHVMFMGIWLIKSNASPWWRKYYHLRHHQYSGQVNDVEERLIGLGLRWWSPKRLLVTLTPAGTLLVANDIARDDPEFSRVNLVLSNSPVIVLSTAAMLVHLICASGGDAALVKAGVLSVPLHAFLSQRILPALFLYNAAVNFPNVLRQSCLVIISTYCHYYGDIPERDVFFQTQILDHPLLWPFQLFCFNFGATHIIHHFVTRQPFYLRQVTAFRVLPIMKALGCRHNDMGNNFRGNRWVGGEKAVDGKGE--MMAGPREE----------GEDWTATTPRTSDDEDSGEEHIKGA 429
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04310.1 ID=NO04G04310.1|Name=NO04G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2718bp
GCGAGAGGGCTTCTGCTCCTTAGTCTTTCTGAATCAGACTTTCCGTGCAC
ATACAATTCGGACACTCCACCAAACCTGCAGTACTCTCTGAGCTACATGT
CCTAGCGTCGCTCGGCCGTACTCGAAACGCTTCCTCGCTTTGGCGATGAG
TTCTTCGTTTCCCAACGGCCTTGGGCACTCGCCAGAGGAAACCACGTCTG
TGCGCCTCGCTCTGCAAAAAGTCGTGTCAAGTGTCCAATGACTACGTTAT
GGCCTGGGCGTGACTGGTTATATTGCATTCGCTGGGCGGATCTCATTCAG
GGGCTGTCATAAGTGTCTTGTGGTCCACGGGCGGGGCTAGTCGGGCATGC
CAATCCCTCGTCTTTTCTTTGCTTTTGCTGTCGTGCACTCGATGATTCAA
AGTCTCCCACCAACTACTGTCACGTACGCACATACGCTTCCTCGTCACTC
ATGCAACTCCGTCTTTCCCACTCGATCCCCATGCACTCTGCACAGGCCTT
CCTGTGTGCCACGATCGCGGGGCCATTTGAACGCAAGGCAGGTCTTGTTC
TTGCTTCGTCTTCGATCTCTCCCCACTGCTGCCTGTGTCCTTGTGGAAGA
GTGAGTGGAACGAAGAAGAGATTTTACACAAGGAGATATGGCGCCCAACG
CAGAGCTTACCCGGCGACAGCGACCAGCGTCGAACCATCCAATCAAGCCC
TCCGTCGCAGGCATGGAAAAGTCCTCGCGCAGCTCCAGCTCCGAGAGCCT
CAGCAACAGTAATAGCCAGCAAGGCATCTCCCATCTCAGCCAAGAGGCCG
CCAAAGTCAAACTGATTCGGGACGCTATCCGTGCCGAAGACAAGCGTCTG
CGGGCCGCCTATCCTTTCCCCTTGGGCGAGCACTGGCAGAGCGCCGTTGG
TCTCTTCATCTATGTAGCGGCATGGGCGGCTTGGGGACTTGCGACGCATG
CTTGGTGGCACGGCTCGTTAAGCATGCCGGCGCTGATGGTAATTAATGCG
CTGGCTATCTCGCTTTTGCATGAGATGGAGCATGATTTGATCCATGAGTT
GTATTTTAAACGAAGCCCGTGGGTGCAGCATGTAATGTTTGCTGGGATTT
GGCTCATCAAGAGCAATGCCTCGCCGTGGTGGAGGAAGTACTACCATCTG
CGGCACCACCAGTACAGTGGGCAGGTGAATGACGTGGAGGAGCGCTTAAT
CGGCCTGGGCCTTCCTTGGTACTCGCCTAAGAGGCTGCTCGTCACTCTGA
CGCCCGCAGGGACTTTGTTGGTGGCTAATGACATTGCAAGGGATGATCCG
GAATTTTCGCGCTTTAATTTGGTTTTATGCAATTCTCCCGTCATTGTCCT
GTCGACGGCAGCGATGCTTGTGCATTTAGTGGCGTCTTTGGGAGGGGGTG
AAGCGCTTGTGAGGGCGGGTCTCCTCAGCGAGGGCATGTTTGCGATGCTG
TCGCACCGGTTGTTGCCGGCCCTGTTTTTGTACAACGCCACGGTGAACTT
CCCGAATGTGTTGCGGCAGAGTTGTCTGGTGATCATCTCGACGTACTGCC
ACTATTATGGGGACATCCCAGAGAGGGACGTTTTCTTCCAAACGCAAATT
TTGGACCATCCGTTTCTGTGGCCGTTGCAGTTGTTCTGTTTTAATTTCGG
AGCGACGCATATCATTCATCACTTTGTGACACGGCAGCCATTTTATTTGC
GGCAGGTAGTGGCGTTTGGGGTGTTGCCGTTGATGAAGGCACAGGGGTGC
CGGCATAACGATATGAGCAACAATTTTAGGGGTAACAGGTGGGCGGGCGG
AGAGGACGCGGTCGACCATGAGGAGGAGACGACGACCTTGACCGGGATCA
AGGGGAGAGCGGGCAAGGGAGGGAATGGGGGAATGGGTGGGGCGTCATCG
ACGGACACGAGCCCGACGACGAGCGATGATGAGGATGGAGCGGAGGACCA
CATAAAGGGGGCGTAACGTGGAGGAGGAAGGAAGGGAGGGAGGGGAGGAG
GAAGTGTTTGACCGTTTTTCAAGCTCTTATTGGATGGTTGAAGGGGAGCC
CGATGACCAGGCAGACAGAGAGAGGGAAAGAGATGGAGAGTGATATACAT
CGTGCCGAAATATTTGGAAATGGTGGGTTCGTTTTACTCTGAGAATTGAT
AGTTAACGGTCGGTCGTCATTATATTTATATCGCTGTCATTATGTTATGT
ACGGAAACGCGCTCGCCTAGAGCAAGCGAAGCATGCAAGGAGTCAGAGCA
ATAGCAACGCGAGTCAAAAAAAAAAGGTGTGAAGTATGGGTTACCAAGAA
CGACGAGATTTGAGAAAAATAGAGCACATGGATTGAGAGCGATGTCGTGT
GTAGTGGAATGGAAATAAGGAGGGAGCAATAAAAACCCTTTAAAAAACCA
AGAAAAAAAATCAGGAGCAGGCCCAGTACTCAGCGATCAAAAACAGAAAG
GTGTGTGTCTGCGTCAATTTGACGAGGAAGGATGTGGCGAGAGGAAATAG
AGTGACGTCGTCAAATAACAGCAACGAAAGTGGGGGCCCCCAAAGCAGTT
ATGAGCCAGCAAACGAACGAGAACAAGGAACACAAACAATGCAACCGTAC
AGAAAGCCACTCCCCAGGAAAAAAGGAGATAGAGATGGAGAAAAAAAGAG
AAAGGAGACATACAAAGAAAAATGGAAGGATCATAAGAAAATTGCATTTT
TATTTTATTTTATTTTCT back to topprotein sequence of NO04G04310.1 >NO04G04310.1-protein ID=NO04G04310.1-protein|Name=NO04G04310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MAPNAELTRRQRPASNHPIKPSVAGMEKSSRSSSSESLSNSNSQQGISHL
SQEAAKVKLIRDAIRAEDKRLRAAYPFPLGEHWQSAVGLFIYVAAWAAWG
LATHAWWHGSLSMPALMVINALAISLLHEMEHDLIHELYFKRSPWVQHVM
FAGIWLIKSNASPWWRKYYHLRHHQYSGQVNDVEERLIGLGLPWYSPKRL
LVTLTPAGTLLVANDIARDDPEFSRFNLVLCNSPVIVLSTAAMLVHLVAS
LGGGEALVRAGLLSEGMFAMLSHRLLPALFLYNATVNFPNVLRQSCLVII
STYCHYYGDIPERDVFFQTQILDHPFLWPLQLFCFNFGATHIIHHFVTRQ
PFYLRQVVAFGVLPLMKAQGCRHNDMSNNFRGNRWAGGEDAVDHEEETTT
LTGIKGRAGKGGNGGMGGASSTDTSPTTSDDEDGAEDHIKGA* back to topmRNA from alignment at chr4:1164290..1167385- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04310.1 ID=NO04G04310.1|Name=NO04G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3096bp|location=Sequence derived from alignment at chr4:1164290..1167385- (Nannochloropsis oceanica)
GCGAGAGGGCTTCTGCTCCTTAGTCTTTCTGAATCAGACTTTCCGTGCAC
ATACAATTCGGACACTCCACCAAACCTGCAGTACTCTCTGAGCTACATGT
CCTAGCGTCGCTCGGCCGTACTCGAAACGCTTCCTCGCTTTGGCGATGAG
TTCTTCGTTTCCCAACGGCCTTGGGCACTCGCCAGAGGAAACCACGTCTG
TGCGCCTCGCTCTGCAAAAAGTCGTGTCAAGTGTCCAATGACTACGTTAT
GGCCTGGGCGTGACTGGTTATATTGCATTCGCTGGGCGGATCTCATTCAG
GGGCTGTCATAAGTGTCTTGTGGTCCACGGGCGGGGCTAGTCGGGCATGC
CAATCCCTCGTCTTTTCTTTGCTTTTGCTGTCGTGCACTCGATGATTCAA
AGTCTCCCACCAACTACTGTCACGTACGCACATACGCTTCCTCGTCACTC
ATGCAACTCCGTCTTTCCCACTCGATCCCCATGCACTCTGCACAGGCCTT
CCTGTGTGCCACGATCGCGGGGCCATTTGAACGCAAGGCAGGTCTTGTTC
TTGCTTCGTCTTCGATCTCTCCCCACTGCTGCCTGTGTCCTTGTGGAAGA
GTGAGTGGAACGAAGAAGAGATTTTACACAAGGAGATATGGCGCCCAACG
CAGAGCTTACCCGGCGACAGCGACCAGCGTCGAACCATCCAATCAAGCCC
TCCGTCGCAGGTGAGAAGTAGTCATGGGACACCAGACGAGTAGGGGGAGT
GAACGGTCGAATGCGATCTCTCGCTCTTGGTGTGTACGCGTGTGCGCGTA
CACGTGTGTGTGTTGTGGATTATCCTGATCTTTCCCTCCGATGGCACTGT
GATGCTTTCCATGAAGGCGATGGGCTGAGACATGCTTGTGTTGTCGCTGC
CTGTGGTCAATTTGACTCAACCCAACCAACCCTTTCTACCTGCCCTCCAC
TTCAGTCAAATGCTCCAAGAACGGACTCAACCGATGGTGTTCTTCCGTCT
CTGGCTCTCTACGAATTTCGCACCCACATCATTCATTTCTTTCCACCTTC
CCTACGTACACATCTCTCCTTCCCCTCCCTTAAATCAGGCATGGAAAAGT
CCTCGCGCAGCTCCAGCTCCGAGAGCCTCAGCAACAGTAATAGCCAGCAA
GGCATCTCCCATCTCAGCCAAGAGGCCGCCAAAGTCAAACTGATTCGGGA
CGCTATCCGTGCCGAAGACAAGCGTCTGCGGGCCGCCTATCCTTTCCCCT
TGGGCGAGCACTGGCAGAGCGCCGTTGGTCTCTTCATCTATGTAGCGGCA
TGGGCGGCTTGGGGACTTGCGACGCATGCTTGGTGGCACGGCTCGTTAAG
CATGCCGGCGCTGATGGTAATTAATGCGCTGGCTATCTCGCTTTTGCATG
AGATGGAGCATGATTTGATCCATGAGTTGTATTTTAAACGAAGCCCGTGG
GTGCAGCATGTAATGTTTGCTGGGATTTGGCTCATCAAGAGCAATGCCTC
GCCGTGGTGGAGGAAGTACTACCATCTGCGGCACCACCAGTACAGTGGGC
AGGTGAATGACGTGGAGGAGCGCTTAATCGGCCTGGGCCTTCCTTGGTAC
TCGCCTAAGAGGCTGCTCGTCACTCTGACGCCCGCAGGGACTTTGTTGGT
GGCTAATGACATTGCAAGGGATGATCCGGAATTTTCGCGCTTTAATTTGG
TTTTATGCAATTCTCCCGTCATTGTCCTGTCGACGGCAGCGATGCTTGTG
CATTTAGTGGCGTCTTTGGGAGGGGGTGAAGCGCTTGTGAGGGCGGGTCT
CCTCAGCGAGGGCATGTTTGCGATGCTGTCGCACCGGTTGTTGCCGGCCC
TGTTTTTGTACAACGCCACGGTGAACTTCCCGAATGTGTTGCGGCAGAGT
TGTCTGGTGATCATCTCGACGTACTGCCACTATTATGGGGACATCCCAGA
GAGGGACGTTTTCTTCCAAACGCAAATTTTGGACCATCCGTTTCTGTGGC
CGTTGCAGTTGTTCTGTTTTAATTTCGGAGCGACGCATATCATTCATCAC
TTTGTGACACGGCAGCCATTTTATTTGCGGCAGGTAGTGGCGTTTGGGGT
GTTGCCGTTGATGAAGGCACAGGGGTGCCGGCATAACGATATGAGCAACA
ATTTTAGGGGTAACAGGTGGGCGGGCGGAGAGGACGCGGTCGACCATGAG
GAGGAGACGACGACCTTGACCGGGATCAAGGGGAGAGCGGGCAAGGGAGG
GAATGGGGGAATGGGTGGGGCGTCATCGACGGACACGAGCCCGACGACGA
GCGATGATGAGGATGGAGCGGAGGACCACATAAAGGGGGCGTAACGTGGA
GGAGGAAGGAAGGGAGGGAGGGGAGGAGGAAGTGTTTGACCGTTTTTCAA
GCTCTTATTGGATGGTTGAAGGGGAGCCCGATGACCAGGCAGACAGAGAG
AGGGAAAGAGATGGAGAGTGATATACATCGTGCCGAAATATTTGGAAATG
GTGGGTTCGTTTTACTCTGAGAATTGATAGTTAACGGTCGGTCGTCATTA
TATTTATATCGCTGTCATTATGTTATGTACGGAAACGCGCTCGCCTAGAG
CAAGCGAAGCATGCAAGGAGTCAGAGCAATAGCAACGCGAGTCAAAAAAA
AAAGGTGTGAAGTATGGGTTACCAAGAACGACGAGATTTGAGAAAAATAG
AGCACATGGATTGAGAGCGATGTCGTGTGTAGTGGAATGGAAATAAGGAG
GGAGCAATAAAAACCCTTTAAAAAACCAAGAAAAAAAATCAGGAGCAGGC
CCAGTACTCAGCGATCAAAAACAGAAAGGTGTGTGTCTGCGTCAATTTGA
CGAGGAAGGATGTGGCGAGAGGAAATAGAGTGACGTCGTCAAATAACAGC
AACGAAAGTGGGGGCCCCCAAAGCAGTTATGAGCCAGCAAACGAACGAGA
ACAAGGAACACAAACAATGCAACCGTACAGAAAGCCACTCCCCAGGAAAA
AAGGAGATAGAGATGGAGAAAAAAAGAGAAAGGAGACATACAAAGAAAAA
TGGAAGGATCATAAGAAAATTGCATTTTTATTTTATTTTATTTTCT back to topCoding sequence (CDS) from alignment at chr4:1164290..1167385- >NO04G04310.1 ID=NO04G04310.1|Name=NO04G04310.1|organism=Nannochloropsis oceanica|type=CDS|length=1329bp|location=Sequence derived from alignment at chr4:1164290..1167385- (Nannochloropsis oceanica)
ATGGCGCCCAACGCAGAGCTTACCCGGCGACAGCGACCAGCGTCGAACCA
TCCAATCAAGCCCTCCGTCGCAGGCATGGAAAAGTCCTCGCGCAGCTCCA
GCTCCGAGAGCCTCAGCAACAGTAATAGCCAGCAAGGCATCTCCCATCTC
AGCCAAGAGGCCGCCAAAGTCAAACTGATTCGGGACGCTATCCGTGCCGA
AGACAAGCGTCTGCGGGCCGCCTATCCTTTCCCCTTGGGCGAGCACTGGC
AGAGCGCCGTTGGTCTCTTCATCTATGTAGCGGCATGGGCGGCTTGGGGA
CTTGCGACGCATGCTTGGTGGCACGGCTCGTTAAGCATGCCGGCGCTGAT
GGTAATTAATGCGCTGGCTATCTCGCTTTTGCATGAGATGGAGCATGATT
TGATCCATGAGTTGTATTTTAAACGAAGCCCGTGGGTGCAGCATGTAATG
TTTGCTGGGATTTGGCTCATCAAGAGCAATGCCTCGCCGTGGTGGAGGAA
GTACTACCATCTGCGGCACCACCAGTACAGTGGGCAGGTGAATGACGTGG
AGGAGCGCTTAATCGGCCTGGGCCTTCCTTGGTACTCGCCTAAGAGGCTG
CTCGTCACTCTGACGCCCGCAGGGACTTTGTTGGTGGCTAATGACATTGC
AAGGGATGATCCGGAATTTTCGCGCTTTAATTTGGTTTTATGCAATTCTC
CCGTCATTGTCCTGTCGACGGCAGCGATGCTTGTGCATTTAGTGGCGTCT
TTGGGAGGGGGTGAAGCGCTTGTGAGGGCGGGTCTCCTCAGCGAGGGCAT
GTTTGCGATGCTGTCGCACCGGTTGTTGCCGGCCCTGTTTTTGTACAACG
CCACGGTGAACTTCCCGAATGTGTTGCGGCAGAGTTGTCTGGTGATCATC
TCGACGTACTGCCACTATTATGGGGACATCCCAGAGAGGGACGTTTTCTT
CCAAACGCAAATTTTGGACCATCCGTTTCTGTGGCCGTTGCAGTTGTTCT
GTTTTAATTTCGGAGCGACGCATATCATTCATCACTTTGTGACACGGCAG
CCATTTTATTTGCGGCAGGTAGTGGCGTTTGGGGTGTTGCCGTTGATGAA
GGCACAGGGGTGCCGGCATAACGATATGAGCAACAATTTTAGGGGTAACA
GGTGGGCGGGCGGAGAGGACGCGGTCGACCATGAGGAGGAGACGACGACC
TTGACCGGGATCAAGGGGAGAGCGGGCAAGGGAGGGAATGGGGGAATGGG
TGGGGCGTCATCGACGGACACGAGCCCGACGACGAGCGATGATGAGGATG
GAGCGGAGGACCACATAAAGGGGGCGTAA back to top
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