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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:513829..515596 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01740.1 vs.
Match: EWM28578.1 (rna recognition motif-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 106.7 bits (265), Expect = 2.300e-19 Identity = 246/603 (40.80%), Postives = 279/603 (46.27%), Query Frame = 0
Query: 1 MPPTPGMVLLPAQQLFQQQQQLLQQQQLLLQGQQ--APYSF-----LPGGGGEGGREGGRVGYENDRKRGRDRERGEGRGGGDGWEGGDWEVGPNKRRSFRGEGKYGPAGGMGAGGYSEDDGRRNGEGGRGGETPYRSRGRSRSPPSRE--RRGG-------SSRGGGGYVG-----GSRRSPERDLSRYGRGGGGGGGGGGGGGRY--RRDDDFH-PPRGPAPPQLLPAV--YVPQQQQQLLPQSTMAFGPPIVSYPHHHHHQQQQQQQQQQQPPPPQRPPPPSWVPQGQTYPAPAMAPAPAYLPAPPPPQ-------QQQQREPV--YQQQQGYL----QQQQPQQMLQQQPPP-------PSPFPHQQQTV---QSAQVPRPMSMGAKKLLPPGAK--------QLQPPQQPQQLQQQHQPPPPQQQQ----QQQQQPPQPLPPYYAVSVGQPYLPPQNGHHQQQQQQQQQQQQPQYYSQQPQQAPMPPPGYAHPQHAYAPPPQQPQQHHQQQHPLPAYEDGATDGGGGAGGGDGGGGGRGGGGGNRDRPRGRPRGGRGRDKRDSERGTRGGGGRSGDQPPPQRGEKPYDFLKHQQWRGE 543
MPP P M+++PA Q L G P +F GGEGGRE G GR R R G EGG WE G +KR KYGP GG G D GR +G RS +SRSPP R+ R GG SS G + G G R ER R GGG GG G Y R + +++ R PP L P V PQQQ LP ST+A+G P+VSYP HH Q QQPP P P P+W P Q YP AM P PAY PPP Q QQ P+ Y Q GY QQQ PQQ QQQ P PSPFP QQ + QS+ R M GAKKLLPPGA+ P Q Q QQ+H+ P +QQQ Q QQP PP GQ Y PPQNG QQQQQQ Q QQP YY PQQ PP GYA+P + P QQ QQ QQQ + +GGGG R+R RGRPR GRGRD R +RGGG DQPPPQRG+KPY FL Q+ RG+
Sbjct: 570 MPPPPPMMMMPAPPPPSQPYPPLPPTPYARPGAMPSGPLTFQGQLGYVREGGEGGREYGG---------GRKRLRSGSEEWEGGREGGAWERGGSKRWRSEARSKYGPGGGREGG---RDGGREDGR--------RRSGVQSRSPPGRQGWREGGSYDEDRFSSEGDYPHRGLDEGRGVGRREERSRGGDRRRGGGEAGGDVSGPMYYDRGEGEWNGVGRSRGPPPLPPPVAPLPPQQQPPPLP-STLAYGTPVVSYPQQHH------ATQHQQPPLPAHAPQPAWGPAQQAYPPTAM-PPPAY---PPPQQGPPLHHLQQPPSAPISQYGPQAGYAAPASQQQYPQQQQQQQQQPPSEQMPNPSPFPPQQPHISGAQSSATSRLMPPGAKKLLPPGARVGPSGKTAARMPGDQSPQPQQEHRVPEHRQQQSHHHSQAQQPYYMNPP----PTGQGY-PPQNG-FQQQQQQLQPPQQP-YYPPPPQQ---PPAGYAYPP-SNMPQQQQQQQQQQQQQQQQQQQQPYLPQAPPQSTPEGGGG--------RERNRGRPRSGRGRD-----RSSRGGG---TDQPPPQRGDKPYAFL--QKRRGD 1112
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01740.1 ID=NO04G01740.1|Name=NO04G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp ATGCCACCTACTCCTGGCATGGTGCTGTTGCCGGCCCAGCAGCTTTTTCA ACAGCAGCAGCAGTTACTGCAGCAGCAGCAACTCTTACTGCAAGGGCAGC AGGCCCCGTATTCCTTCCTGCCGGGAGGAGGCGGGGAGGGAGGAAGGGAG GGAGGAAGGGTAGGATATGAGAACGACAGGAAGAGAGGAAGAGATCGCGA GCGAGGAGAAGGACGAGGAGGAGGGGATGGGTGGGAGGGAGGAGATTGGG AAGTGGGGCCGAACAAGCGAAGATCGTTTCGAGGGGAGGGCAAATATGGG CCTGCTGGAGGGATGGGGGCTGGTGGGTACAGTGAGGATGACGGACGAAG GAATGGAGAAGGAGGGAGGGGGGGAGAAACGCCCTATCGGAGTAGGGGGA GGAGTCGCTCCCCTCCTTCGCGGGAGCGGAGGGGAGGAAGTTCAAGGGGG GGGGGCGGATATGTCGGGGGGTCGCGGAGATCGCCAGAGAGGGATTTAAG TCGGTACGGCCGTGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAG GGAGGTATAGGCGTGATGACGACTTTCATCCTCCCCGTGGACCCGCCCCT CCGCAGCTTTTGCCGGCCGTTTATGTCCCGCAGCAACAGCAGCAGCTGCT GCCGCAATCCACCATGGCGTTTGGTCCTCCCATCGTGTCTTACCCCCACC ACCACCACCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCGCCG CCGCCTCAACGCCCACCTCCTCCATCGTGGGTGCCTCAAGGACAAACATA TCCCGCACCCGCCATGGCACCTGCACCTGCTTATCTCCCAGCTCCTCCCC CTCCTCAGCAGCAGCAGCAGCGAGAACCCGTCTATCAACAGCAGCAAGGC TACCTGCAGCAGCAGCAGCCGCAGCAAATGCTCCAGCAGCAGCCACCCCC TCCCTCTCCCTTCCCACATCAGCAGCAGACCGTCCAATCTGCGCAGGTCC CTCGGCCCATGTCTATGGGGGCCAAAAAGCTCTTACCACCAGGCGCCAAG CAGCTGCAGCCCCCCCAACAGCCGCAGCAGCTGCAACAGCAGCATCAGCC GCCTCCTCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCCAC TACCTCCTTATTATGCAGTTTCTGTAGGGCAACCGTACCTCCCACCTCAG AATGGACACCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACC GCAGTACTATTCGCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTT ACGCCCATCCCCAGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAG CACCACCAACAGCAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGA TGGTGGTGGTGGTGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGG GAGGAGGAGGGAATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGT GGACGTGATAAAAGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACG GAGCGGAGACCAACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTC TGAAGCACCAGCAGTGGCGGGGGGAGTGAGGGAAGAGGGAGGGAGGGAAG CGAGGAGTAGGAAAGCCGTTAGTAAGGGTGAATTTTAATGTTTGACATCG CGATTTCGATGCACAGGAAAAAGAAAGACGGGAAGTCTCCTTTTGAGAAA TAGATAATTTCTCCTGAA back to topprotein sequence of NO04G01740.1 >NO04G01740.1-protein ID=NO04G01740.1-protein|Name=NO04G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp MPPTPGMVLLPAQQLFQQQQQLLQQQQLLLQGQQAPYSFLPGGGGEGGRE GGRVGYENDRKRGRDRERGEGRGGGDGWEGGDWEVGPNKRRSFRGEGKYG PAGGMGAGGYSEDDGRRNGEGGRGGETPYRSRGRSRSPPSRERRGGSSRG GGGYVGGSRRSPERDLSRYGRGGGGGGGGGGGGGRYRRDDDFHPPRGPAP PQLLPAVYVPQQQQQLLPQSTMAFGPPIVSYPHHHHHQQQQQQQQQQQPP PPQRPPPPSWVPQGQTYPAPAMAPAPAYLPAPPPPQQQQQREPVYQQQQG YLQQQQPQQMLQQQPPPPSPFPHQQQTVQSAQVPRPMSMGAKKLLPPGAK QLQPPQQPQQLQQQHQPPPPQQQQQQQQQPPQPLPPYYAVSVGQPYLPPQ NGHHQQQQQQQQQQQQPQYYSQQPQQAPMPPPGYAHPQHAYAPPPQQPQQ HHQQQHPLPAYEDGATDGGGGAGGGDGGGGGRGGGGGNRDRPRGRPRGGR GRDKRDSERGTRGGGGRSGDQPPPQRGEKPYDFLKHQQWRGE* back to topmRNA from alignment at chr4:513829..515596+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01740.1 ID=NO04G01740.1|Name=NO04G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp|location=Sequence derived from alignment at chr4:513829..515596+ (Nannochloropsis oceanica) ATGCCACCTACTCCTGGCATGGTGCTGTTGCCGGCCCAGCAGCTTTTTCA
ACAGCAGCAGCAGTTACTGCAGCAGCAGCAACTCTTACTGCAAGGGCAGC
AGGCCCCGTATTCCTTCCTGCCGGGAGGAGGCGGGGAGGGAGGAAGGGAG
GGAGGAAGGGTAGGATATGAGAACGACAGGAAGAGAGGAAGAGATCGCGA
GCGAGGAGAAGGACGAGGAGGAGGGGATGGGTGGGAGGGAGGAGATTGGG
AAGTGGGGCCGAACAAGCGAAGATCGTTTCGAGGGGAGGGCAAATATGGG
CCTGCTGGAGGGATGGGGGCTGGTGGGTACAGTGAGGATGACGGACGAAG
GAATGGAGAAGGAGGGAGGGGGGGAGAAACGCCCTATCGGAGTAGGGGGA
GGAGTCGCTCCCCTCCTTCGCGGGAGCGGAGGGGAGGAAGTTCAAGGGGG
GGGGGCGGATATGTCGGGGGGTCGCGGAGATCGCCAGAGAGGGATTTAAG
TCGGTACGGCCGTGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAG
GGAGGTATAGGCGTGATGACGACTTTCATCCTCCCCGTGGACCCGCCCCT
CCGCAGCTTTTGCCGGCCGTTTATGTCCCGCAGCAACAGCAGCAGCTGCT
GCCGCAATCCACCATGGCGTTTGGTCCTCCCATCGTGTCTTACCCCCACC
ACCACCACCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCGCCG
CCGCCTCAACGCCCACCTCCTCCATCGTGGGTGCCTCAAGGACAAACATA
TCCCGCACCCGCCATGGCACCTGCACCTGCTTATCTCCCAGCTCCTCCCC
CTCCTCAGCAGCAGCAGCAGCGAGAACCCGTCTATCAACAGCAGCAAGGC
TACCTGCAGCAGCAGCAGCCGCAGCAAATGCTCCAGCAGCAGCCACCCCC
TCCCTCTCCCTTCCCACATCAGCAGCAGACCGTCCAATCTGCGCAGGTCC
CTCGGCCCATGTCTATGGGGGCCAAAAAGCTCTTACCACCAGGCGCCAAG
CAGCTGCAGCCCCCCCAACAGCCGCAGCAGCTGCAACAGCAGCATCAGCC
GCCTCCTCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCCAC
TACCTCCTTATTATGCAGTTTCTGTAGGGCAACCGTACCTCCCACCTCAG
AATGGACACCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACC
GCAGTACTATTCGCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTT
ACGCCCATCCCCAGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAG
CACCACCAACAGCAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGA
TGGTGGTGGTGGTGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGG
GAGGAGGAGGGAATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGT
GGACGTGATAAAAGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACG
GAGCGGAGACCAACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTC
TGAAGCACCAGCAGTGGCGGGGGGAGTGAGGGAAGAGGGAGGGAGGGAAG
CGAGGAGTAGGAAAGCCGTTAGTAAGGGTGAATTTTAATGTTTGACATCG
CGATTTCGATGCACAGGAAAAAGAAAGACGGGAAGTCTCCTTTTGAGAAA
TAGATAATTTCTCCTGAA back to topCoding sequence (CDS) from alignment at chr4:513829..515596+ >NO04G01740.1 ID=NO04G01740.1|Name=NO04G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr4:513829..515596+ (Nannochloropsis oceanica) ATGCCACCTACTCCTGGCATGGTGCTGTTGCCGGCCCAGCAGCTTTTTCA ACAGCAGCAGCAGTTACTGCAGCAGCAGCAACTCTTACTGCAAGGGCAGC AGGCCCCGTATTCCTTCCTGCCGGGAGGAGGCGGGGAGGGAGGAAGGGAG GGAGGAAGGGTAGGATATGAGAACGACAGGAAGAGAGGAAGAGATCGCGA GCGAGGAGAAGGACGAGGAGGAGGGGATGGGTGGGAGGGAGGAGATTGGG AAGTGGGGCCGAACAAGCGAAGATCGTTTCGAGGGGAGGGCAAATATGGG CCTGCTGGAGGGATGGGGGCTGGTGGGTACAGTGAGGATGACGGACGAAG GAATGGAGAAGGAGGGAGGGGGGGAGAAACGCCCTATCGGAGTAGGGGGA GGAGTCGCTCCCCTCCTTCGCGGGAGCGGAGGGGAGGAAGTTCAAGGGGG GGGGGCGGATATGTCGGGGGGTCGCGGAGATCGCCAGAGAGGGATTTAAG TCGGTACGGCCGTGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAG GGAGGTATAGGCGTGATGACGACTTTCATCCTCCCCGTGGACCCGCCCCT CCGCAGCTTTTGCCGGCCGTTTATGTCCCGCAGCAACAGCAGCAGCTGCT GCCGCAATCCACCATGGCGTTTGGTCCTCCCATCGTGTCTTACCCCCACC ACCACCACCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCGCCG CCGCCTCAACGCCCACCTCCTCCATCGTGGGTGCCTCAAGGACAAACATA TCCCGCACCCGCCATGGCACCTGCACCTGCTTATCTCCCAGCTCCTCCCC CTCCTCAGCAGCAGCAGCAGCGAGAACCCGTCTATCAACAGCAGCAAGGC TACCTGCAGCAGCAGCAGCCGCAGCAAATGCTCCAGCAGCAGCCACCCCC TCCCTCTCCCTTCCCACATCAGCAGCAGACCGTCCAATCTGCGCAGGTCC CTCGGCCCATGTCTATGGGGGCCAAAAAGCTCTTACCACCAGGCGCCAAG CAGCTGCAGCCCCCCCAACAGCCGCAGCAGCTGCAACAGCAGCATCAGCC GCCTCCTCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCCAC TACCTCCTTATTATGCAGTTTCTGTAGGGCAACCGTACCTCCCACCTCAG AATGGACACCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACC GCAGTACTATTCGCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTT ACGCCCATCCCCAGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAG CACCACCAACAGCAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGA TGGTGGTGGTGGTGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGG GAGGAGGAGGGAATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGT GGACGTGATAAAAGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACG GAGCGGAGACCAACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTC TGAAGCACCAGCAGTGGCGGGGGGAGTGA back to top
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