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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:489261..491597 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01620.1 vs.
Match: EWM28622.1 (hypothetical protein Naga_100009g48 [Nannochloropsis gaditana]) HSP 1 Score: 174.5 bits (441), Expect = 1.100e-39 Identity = 124/299 (41.47%), Postives = 158/299 (52.84%), Query Frame = 0
Query: 144 EALRAEVAHLRNKLKEALGDVPVCSICLEIVSYPVELQDCRHLYCCECFYMHATSNTAGNRACPVCRCKINKAPLPPPLAFIQHLEWVKKEKRRHDEEMAAAT-------------AAAAASAPALFATIEKRAGS-------------CGGVDDDNDDDAASASAGAVRQA--AGDDKDVTDAAAAAIAAAATTAARVARTTYQLQMEELKRLFDREDR-----------RRRRP-----GEREGGG--AYDDSDGVYRCPRCHWEMLEGRCARGCGDGEDEGEEEEDMLVVADSSEY 397
+ALRAEV LR KL ALGD+P CSICLE V YPVELQ+CRHL+CC+CFYM+A T GN ACP CR + KAPLPPPLAFIQHL+ +K KRR E + A A S E++ G D++ +D ++AG + +A +G ++ D A AAA AAR AR YQ QM ELK +F+ +R RR RP E +G YD+SDGVYRC CHWE+ EG C +D+ EE+ D+ V+ + Y
Sbjct: 72 KALRAEVELLRKKLDAALGDIPACSICLECVDYPVELQECRHLFCCQCFYMYAKWKTTGNIACPACRTTVCKAPLPPPLAFIQHLDAIKVAKRRQQEAVRTGADPGQSLEGGIYRIDAKAESQRRSEEESERKVGEKIKLERWKEGVSMMKSHDEEIGEDDDRSAAGLLDRAGPSGQAQEDRDMEAKKTAAATAIAARRARAAYQGQMVELKVMFEAAERMGEGAVGLNSSRRIRPRTIRNAEMDGSTHLNYDESDGVYRCLNCHWEVDEGGLCARCLHDDDDEEEDVDVAHVSRTDFY 370
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01620.1 ID=NO04G01620.1|Name=NO04G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2337bp GATGGCAACTCGCCATCGGGCGGACCTCCTCCCCCCCCTTCCTTTCTTAA GCACATAATGCAAATAATGCCGGAGGACGACGAAAATGCGCAGCCCTGTA TCTTCTCCTCCCTCCTGTCACTCTTCTTTCAAATTTTCCTTCCACCATCC ACCTCGCAACTTATCCAGCCGCAGCACGAGCACACACTTAAAATCATCCG GGCAAGCCTGAGGGCCGCCAACCCAGCGCCAAACTACGGCAAGGACCAGG ATGCTGCAGGTCCCTCTTTTCCTCACTTCCATCTATACATATGTTTTTCG CATTTTTAATCTTCTTCCCTACTTACGCTACGTCCACAGCGAGCTACAGC GAATGCAATAATGGCCCGCCATGACGAATACCACAACGGGGCCGCCAGCA GCAGCAGCAGCGGTAGCAGCATCAGCAGCAGCCACAGCAGTAGCAACAAG AGGGCGCGGAATGGAACGAGTGAACCACAGCAGGATGATCGTACAACTCG GGCCGCTGCGGCAGCCATTGCCTGTCGTGCTGCTGCTGCTGCTCCTGCTT CAGCTCGTGGTCCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCT GCTGTTGCTGCTGCTGCTGTTGCTGCTCCAGCGGCTGCTGCAGGGAGGCA AGGGGAGGCGAGCAGGGACGCAATTCACTACCATGACATAGCTGGGGACG CAGGAAAAGACAAGGACGACATACATCGTTCCTGCAGAAAAGAAAAGCAG GCTCTGCGTTCTGAAATCAGGGTGCTACATGAGCAACACGAAGCCCTCCG TGCCGAAGTCGCACATCTCCGGAACAAGCTGAAAGAAGCCTTGGGTGATG TGCCTGTCTGCTCCATCTGCTTGGAGATTGTAAGCTACCCGGTGGAGCTC CAAGACTGTCGGCATCTGTACTGCTGCGAGTGCTTCTACATGCACGCTAC CTCCAACACGGCCGGGAATAGGGCCTGTCCCGTGTGTAGGTGTAAGATAA ATAAAGCGCCGTTGCCCCCGCCTTTGGCATTTATCCAGCACTTGGAGTGG GTCAAGAAGGAAAAGAGGCGACATGATGAGGAGATGGCAGCAGCAACAGC AGCAGCAGCTGCTTCAGCGCCCGCACTATTTGCGACGATAGAAAAGAGGG CAGGTAGTTGTGGTGGTGTTGATGACGATAATGATGATGATGCTGCATCA GCATCAGCAGGGGCGGTAAGACAAGCAGCAGGTGACGACAAAGATGTGAC CGATGCTGCTGCTGCTGCTATTGCAGCTGCTGCTACTACAGCTGCTCGTG TTGCGCGGACCACGTATCAGCTGCAGATGGAGGAGTTGAAGCGGTTGTTT GACAGGGAAGATAGGCGACGACGGCGGCCTGGAGAAAGGGAGGGAGGAGG GGCATATGATGATTCGGATGGGGTGTATCGGTGCCCGCGTTGTCATTGGG AGATGTTGGAGGGACGTTGTGCCCGGGGTTGTGGGGATGGTGAGGACGAG GGGGAGGAGGAGGAGGATATGTTAGTGGTGGCTGATAGTAGCGAATACGA ACACGAAGGATTGGCGAGCATGCGGCCGTATCATGATGAGTATTCGAGGA TGGAGAGAAGGATAGTCGAAACTACACGTCGGATGGAGCAGGGGTCATTT CAGCCCGACGTCCCTTCTAGTGGTGGTGGTAGCAGTAGGCAGCGTCGACG ACGAAGGGAAGGAAGGGAAGAAGTGTCAGGGGAACAGGAGGGCGAAGAGG CAGAGAATGAACTAGGCATTGGCTTCGCTCGCCGGCGACTGCAATGGTTG CGGCGGCTACAACGTCGGCAAAGAACGGAGGTGGAGGAGGAGGAGGTGGG AGAAGAAGAGGAAGACGAGGAGGAGAGCGAGGAAGAAGAAGAGAGTGGTT TAGAGGAGGACGATGGGCGGCCTTCATGGATGGTGGGGCGGCCGCAAATG TCAAGGCGGTGTCAGCGACAAGAGGAGTATCTTCTCGAAGAGGAGGATAA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAAGGCCGACGCCAGATTCGGGGCTTGTTTAGGGCTGGG CGTAATGTGGGGAGAGAAGCTGCTTTGCGGCAACGCGCGCGAGATGAAGA GGAAGAGGAAGAAGAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGAGAGGAAGAGGAG GGCAGGGAGGGAGGGAGTTCTGAAGGAGAGGACGGAGAGGACTATAAATA TGTCGTGAGTGGTAACGAGAGCGAGGTAATTGCATAG back to topprotein sequence of NO04G01620.1 >NO04G01620.1-protein ID=NO04G01620.1-protein|Name=NO04G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=659bp MARHDEYHNGAASSSSSGSSISSSHSSSNKRARNGTSEPQQDDRTTRAAA AAIACRAAAAAPASARGPAAAAAAAAAAAAAVAAAAVAAPAAAAGRQGEA SRDAIHYHDIAGDAGKDKDDIHRSCRKEKQALRSEIRVLHEQHEALRAEV AHLRNKLKEALGDVPVCSICLEIVSYPVELQDCRHLYCCECFYMHATSNT AGNRACPVCRCKINKAPLPPPLAFIQHLEWVKKEKRRHDEEMAAATAAAA ASAPALFATIEKRAGSCGGVDDDNDDDAASASAGAVRQAAGDDKDVTDAA AAAIAAAATTAARVARTTYQLQMEELKRLFDREDRRRRRPGEREGGGAYD DSDGVYRCPRCHWEMLEGRCARGCGDGEDEGEEEEDMLVVADSSEYEHEG LASMRPYHDEYSRMERRIVETTRRMEQGSFQPDVPSSGGGSSRQRRRRRE GREEVSGEQEGEEAENELGIGFARRRLQWLRRLQRRQRTEVEEEEVGEEE EDEEESEEEEESGLEEDDGRPSWMVGRPQMSRRCQRQEEYLLEEEDKEEE EEEEEEEEEEEEEEEEEEGRRQIRGLFRAGRNVGREAALRQRARDEEEEE EEEEEGEEEEEEEEEEEEEEEEEEEGEEEEGREGGSSEGEDGEDYKYVVS GNESEVIA* back to topmRNA from alignment at chr4:489261..491597- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01620.1 ID=NO04G01620.1|Name=NO04G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2337bp|location=Sequence derived from alignment at chr4:489261..491597- (Nannochloropsis oceanica) GATGGCAACTCGCCATCGGGCGGACCTCCTCCCCCCCCTTCCTTTCTTAA
GCACATAATGCAAATAATGCCGGAGGACGACGAAAATGCGCAGCCCTGTA
TCTTCTCCTCCCTCCTGTCACTCTTCTTTCAAATTTTCCTTCCACCATCC
ACCTCGCAACTTATCCAGCCGCAGCACGAGCACACACTTAAAATCATCCG
GGCAAGCCTGAGGGCCGCCAACCCAGCGCCAAACTACGGCAAGGACCAGG
ATGCTGCAGGTCCCTCTTTTCCTCACTTCCATCTATACATATGTTTTTCG
CATTTTTAATCTTCTTCCCTACTTACGCTACGTCCACAGCGAGCTACAGC
GAATGCAATAATGGCCCGCCATGACGAATACCACAACGGGGCCGCCAGCA
GCAGCAGCAGCGGTAGCAGCATCAGCAGCAGCCACAGCAGTAGCAACAAG
AGGGCGCGGAATGGAACGAGTGAACCACAGCAGGATGATCGTACAACTCG
GGCCGCTGCGGCAGCCATTGCCTGTCGTGCTGCTGCTGCTGCTCCTGCTT
CAGCTCGTGGTCCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCT
GCTGTTGCTGCTGCTGCTGTTGCTGCTCCAGCGGCTGCTGCAGGGAGGCA
AGGGGAGGCGAGCAGGGACGCAATTCACTACCATGACATAGCTGGGGACG
CAGGAAAAGACAAGGACGACATACATCGTTCCTGCAGAAAAGAAAAGCAG
GCTCTGCGTTCTGAAATCAGGGTGCTACATGAGCAACACGAAGCCCTCCG
TGCCGAAGTCGCACATCTCCGGAACAAGCTGAAAGAAGCCTTGGGTGATG
TGCCTGTCTGCTCCATCTGCTTGGAGATTGTAAGCTACCCGGTGGAGCTC
CAAGACTGTCGGCATCTGTACTGCTGCGAGTGCTTCTACATGCACGCTAC
CTCCAACACGGCCGGGAATAGGGCCTGTCCCGTGTGTAGGTGTAAGATAA
ATAAAGCGCCGTTGCCCCCGCCTTTGGCATTTATCCAGCACTTGGAGTGG
GTCAAGAAGGAAAAGAGGCGACATGATGAGGAGATGGCAGCAGCAACAGC
AGCAGCAGCTGCTTCAGCGCCCGCACTATTTGCGACGATAGAAAAGAGGG
CAGGTAGTTGTGGTGGTGTTGATGACGATAATGATGATGATGCTGCATCA
GCATCAGCAGGGGCGGTAAGACAAGCAGCAGGTGACGACAAAGATGTGAC
CGATGCTGCTGCTGCTGCTATTGCAGCTGCTGCTACTACAGCTGCTCGTG
TTGCGCGGACCACGTATCAGCTGCAGATGGAGGAGTTGAAGCGGTTGTTT
GACAGGGAAGATAGGCGACGACGGCGGCCTGGAGAAAGGGAGGGAGGAGG
GGCATATGATGATTCGGATGGGGTGTATCGGTGCCCGCGTTGTCATTGGG
AGATGTTGGAGGGACGTTGTGCCCGGGGTTGTGGGGATGGTGAGGACGAG
GGGGAGGAGGAGGAGGATATGTTAGTGGTGGCTGATAGTAGCGAATACGA
ACACGAAGGATTGGCGAGCATGCGGCCGTATCATGATGAGTATTCGAGGA
TGGAGAGAAGGATAGTCGAAACTACACGTCGGATGGAGCAGGGGTCATTT
CAGCCCGACGTCCCTTCTAGTGGTGGTGGTAGCAGTAGGCAGCGTCGACG
ACGAAGGGAAGGAAGGGAAGAAGTGTCAGGGGAACAGGAGGGCGAAGAGG
CAGAGAATGAACTAGGCATTGGCTTCGCTCGCCGGCGACTGCAATGGTTG
CGGCGGCTACAACGTCGGCAAAGAACGGAGGTGGAGGAGGAGGAGGTGGG
AGAAGAAGAGGAAGACGAGGAGGAGAGCGAGGAAGAAGAAGAGAGTGGTT
TAGAGGAGGACGATGGGCGGCCTTCATGGATGGTGGGGCGGCCGCAAATG
TCAAGGCGGTGTCAGCGACAAGAGGAGTATCTTCTCGAAGAGGAGGATAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGGCCGACGCCAGATTCGGGGCTTGTTTAGGGCTGGG
CGTAATGTGGGGAGAGAAGCTGCTTTGCGGCAACGCGCGCGAGATGAAGA
GGAAGAGGAAGAAGAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGAGAGGAAGAGGAG
GGCAGGGAGGGAGGGAGTTCTGAAGGAGAGGACGGAGAGGACTATAAATA
TGTCGTGAGTGGTAACGAGAGCGAGGTAATTGCATAG back to topCoding sequence (CDS) from alignment at chr4:489261..491597- >NO04G01620.1 ID=NO04G01620.1|Name=NO04G01620.1|organism=Nannochloropsis oceanica|type=CDS|length=1977bp|location=Sequence derived from alignment at chr4:489261..491597- (Nannochloropsis oceanica) ATGGCCCGCCATGACGAATACCACAACGGGGCCGCCAGCAGCAGCAGCAG CGGTAGCAGCATCAGCAGCAGCCACAGCAGTAGCAACAAGAGGGCGCGGA ATGGAACGAGTGAACCACAGCAGGATGATCGTACAACTCGGGCCGCTGCG GCAGCCATTGCCTGTCGTGCTGCTGCTGCTGCTCCTGCTTCAGCTCGTGG TCCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGTTGCTG CTGCTGCTGTTGCTGCTCCAGCGGCTGCTGCAGGGAGGCAAGGGGAGGCG AGCAGGGACGCAATTCACTACCATGACATAGCTGGGGACGCAGGAAAAGA CAAGGACGACATACATCGTTCCTGCAGAAAAGAAAAGCAGGCTCTGCGTT CTGAAATCAGGGTGCTACATGAGCAACACGAAGCCCTCCGTGCCGAAGTC GCACATCTCCGGAACAAGCTGAAAGAAGCCTTGGGTGATGTGCCTGTCTG CTCCATCTGCTTGGAGATTGTAAGCTACCCGGTGGAGCTCCAAGACTGTC GGCATCTGTACTGCTGCGAGTGCTTCTACATGCACGCTACCTCCAACACG GCCGGGAATAGGGCCTGTCCCGTGTGTAGGTGTAAGATAAATAAAGCGCC GTTGCCCCCGCCTTTGGCATTTATCCAGCACTTGGAGTGGGTCAAGAAGG AAAAGAGGCGACATGATGAGGAGATGGCAGCAGCAACAGCAGCAGCAGCT GCTTCAGCGCCCGCACTATTTGCGACGATAGAAAAGAGGGCAGGTAGTTG TGGTGGTGTTGATGACGATAATGATGATGATGCTGCATCAGCATCAGCAG GGGCGGTAAGACAAGCAGCAGGTGACGACAAAGATGTGACCGATGCTGCT GCTGCTGCTATTGCAGCTGCTGCTACTACAGCTGCTCGTGTTGCGCGGAC CACGTATCAGCTGCAGATGGAGGAGTTGAAGCGGTTGTTTGACAGGGAAG ATAGGCGACGACGGCGGCCTGGAGAAAGGGAGGGAGGAGGGGCATATGAT GATTCGGATGGGGTGTATCGGTGCCCGCGTTGTCATTGGGAGATGTTGGA GGGACGTTGTGCCCGGGGTTGTGGGGATGGTGAGGACGAGGGGGAGGAGG AGGAGGATATGTTAGTGGTGGCTGATAGTAGCGAATACGAACACGAAGGA TTGGCGAGCATGCGGCCGTATCATGATGAGTATTCGAGGATGGAGAGAAG GATAGTCGAAACTACACGTCGGATGGAGCAGGGGTCATTTCAGCCCGACG TCCCTTCTAGTGGTGGTGGTAGCAGTAGGCAGCGTCGACGACGAAGGGAA GGAAGGGAAGAAGTGTCAGGGGAACAGGAGGGCGAAGAGGCAGAGAATGA ACTAGGCATTGGCTTCGCTCGCCGGCGACTGCAATGGTTGCGGCGGCTAC AACGTCGGCAAAGAACGGAGGTGGAGGAGGAGGAGGTGGGAGAAGAAGAG GAAGACGAGGAGGAGAGCGAGGAAGAAGAAGAGAGTGGTTTAGAGGAGGA CGATGGGCGGCCTTCATGGATGGTGGGGCGGCCGCAAATGTCAAGGCGGT GTCAGCGACAAGAGGAGTATCTTCTCGAAGAGGAGGATAAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAAGGCCGACGCCAGATTCGGGGCTTGTTTAGGGCTGGGCGTAATGTGG GGAGAGAAGCTGCTTTGCGGCAACGCGCGCGAGATGAAGAGGAAGAGGAA GAAGAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAAGAAGGAGAGGAAGAGGAGGGCAGGGAGG GAGGGAGTTCTGAAGGAGAGGACGGAGAGGACTATAAATATGTCGTGAGT GGTAACGAGAGCGAGGTAATTGCATAG back to top
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