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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:421356..423110 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01350.1 vs.
Match: EWM28566.1 (hypothetical protein Naga_100009g16 [Nannochloropsis gaditana]) HSP 1 Score: 457.6 bits (1176), Expect = 5.800e-125 Identity = 236/347 (68.01%), Postives = 272/347 (78.39%), Query Frame = 0
Query: 121 IDGGKTNVLFDHSAQFLSAPIS--PSPPSSPSATWDKWVREMEAQGILREWDSKSIGILERGGKFIPRASTTTPPQPRALVSPQGMRAIPTYLAQGLHIDRPKWVSKAKWIPQTDGTGGFWDLWHYQEQLDAFEYLVIAHNGKCAARLAKSAGEALAPVARLLETKFGASIRGGNTPRYMQLCSLFVLMVVLDEPVSLPGRERFEGAFVEGVSELSWVAEQGGKMGQDL--GGGTEGGRAAWVLVSSPGFAEQHKVPQENIPEDKAAEVTRLMLRAFRQALGMQEKGEEGAETSPLVPAASVLQLWGAGNPISVADMPQEAPFVFQAATGCGVCGDWLLAPSIPAAA 464
+DGGKT VLFDHSAQFLSAP S + PSSPS TW+KWV EME GILREWDS+ IG L RGG F PRA+ + QPRAL+ GMRAIP Y+A+ L IDRPKWVSKA+ DGT W LWHYQE+LD F+YLV+AHNGKCAARL KSAG ALAPVARLLETKFGA++RGG+TPR+MQLCSL+VLMVVLD PV LP EGAFVEGV LSWVA+QG K+GQ++ G EG R AWV+VSSP FAE+HKVPQENIP + AAEVT L+L+AFR ALG + + + A + S LQLWGAGNPISVAD+ +E PF+FQA+TGCGVCGDW+LAPSIPAAA
Sbjct: 4 VDGGKTQVLFDHSAQFLSAPSSYVSTSPSSPSDTWNKWVCEMECDGILREWDSQRIGTLSRGGVFSPRATDSGGVQPRALIGSGGMRAIPAYMARNLEIDRPKWVSKAR--QNKDGT---WRLWHYQEELDDFDYLVVAHNGKCAARLMKSAGPALAPVARLLETKFGANLRGGSTPRFMQLCSLYVLMVVLDGPVPLP-TPNLEGAFVEGVPALSWVADQGAKLGQNVEKGPENEGTRRAWVIVSSPTFAEEHKVPQENIPIETAAEVTSLLLQAFRLALGKEGREYDAA----FKVSTSALQLWGAGNPISVADVSEEVPFIFQASTGCGVCGDWMLAPSIPAAA 340
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01350.1 ID=NO04G01350.1|Name=NO04G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp ATGCGGACACCATATCTTTCCTTTCTCTTGGTCGCAGTCCTCTTCGCCGC CACCACAGTCACCATCACTGCCCGCACCACAGCCGCCTTCACCACTTCCC GCATCATGCCTCGCACCGGCACAGGAGGTGCGGCGGGTAAAGCCCTGAAT GCTTGCCTGCAACTGAAACAAAAGCATTCCCGCACTCCCACCGTCGGCAT GTCTGCCGCGGCCAGTCCGAATGGTCGCGTGGCCGTCATCGGCGCGGGCA TCTCTGGCCTGGCGTGTTCCCGCGAGCTCAAGGCCCAAGGGATGGACGTG CTGCTCTTTGACACGGGCCGCTTGGCTCCTGGAGGGCGTTGCTCGAGCAA GACGGTGGTGATAGATGGCGGGAAGACCAACGTGTTGTTTGATCATTCAG CGCAGTTCCTGTCCGCTCCTATTTCCCCCTCCCCACCCTCCTCCCCCTCT GCCACTTGGGACAAATGGGTGCGAGAAATGGAAGCCCAAGGAATCCTCCG TGAATGGGATAGCAAAAGCATAGGTATCCTTGAAAGAGGTGGAAAATTCA TCCCACGTGCCTCCACCACCACCCCGCCGCAGCCCCGTGCGCTTGTAAGC CCTCAAGGCATGCGCGCTATCCCGACTTACTTAGCTCAGGGCTTGCACAT TGACCGCCCCAAATGGGTGTCAAAAGCGAAATGGATCCCCCAAACCGACG GCACCGGTGGCTTTTGGGATCTATGGCATTACCAAGAGCAACTTGACGCC TTTGAATACCTAGTCATTGCGCACAACGGGAAGTGCGCTGCCCGTCTTGC CAAATCAGCAGGGGAGGCCCTGGCACCAGTTGCTCGCTTACTCGAAACAA AGTTTGGGGCGAGCATTCGTGGAGGAAACACACCGAGATATATGCAGTTA TGTAGTCTGTTCGTGCTCATGGTGGTGTTGGACGAACCTGTCTCCTTGCC TGGCAGAGAGCGGTTTGAGGGGGCTTTTGTGGAAGGAGTGTCAGAGTTGT CTTGGGTGGCGGAGCAGGGAGGGAAGATGGGCCAGGATCTAGGAGGAGGG ACGGAGGGAGGGAGGGCGGCATGGGTTTTGGTGTCATCGCCGGGATTCGC GGAGCAGCATAAGGTGCCTCAGGAGAATATCCCTGAAGACAAAGCGGCGG AGGTGACTAGGCTGATGCTTCGTGCATTTCGGCAAGCCTTGGGCATGCAG GAGAAAGGCGAAGAGGGTGCAGAGACATCACCTCTAGTACCTGCAGCATC AGTCCTCCAGTTATGGGGCGCGGGGAATCCGATTTCTGTCGCGGACATGC CCCAAGAGGCGCCCTTTGTTTTTCAGGCGGCAACAGGGTGTGGGGTATGC GGCGATTGGTTGCTTGCACCTTCCATTCCCGCAGCCGCCACCTCAGGAAT CGCCCTGGCACGGCATATAGCCAGGCATCACGCGGCGAAAATAAATGGAG ACAGGAAGGTGTTGGAGGAGGATGTGGGGTTGAGGTGTGGGTTCAAAGCG GTGCAAGGAGCGAGGCCGATTGCCTCTTTTCCCGGTGATAAGGCACCGGT GGTGGAGGCGGTTTCGCCAAAGCCTGGGCGAGGAGAAGGGGGAGGAGGAA GAGGAGGTGGAGGTGGTGGGAGAGGAAGAGGAGGTGGAGGTGGTGGAGGG GGAAGAGGAGGGGGAGGGAATCATAGTGGTGGTAGGGGGGGAGGAGGGGG GAAACCGAAAAAACATCAGCAGCCGCAGCAGCCCAAAAAGAAGACAGACA TGTAA back to topprotein sequence of NO04G01350.1 >NO04G01350.1-protein ID=NO04G01350.1-protein|Name=NO04G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=585bp MRTPYLSFLLVAVLFAATTVTITARTTAAFTTSRIMPRTGTGGAAGKALN ACLQLKQKHSRTPTVGMSAAASPNGRVAVIGAGISGLACSRELKAQGMDV LLFDTGRLAPGGRCSSKTVVIDGGKTNVLFDHSAQFLSAPISPSPPSSPS ATWDKWVREMEAQGILREWDSKSIGILERGGKFIPRASTTTPPQPRALVS PQGMRAIPTYLAQGLHIDRPKWVSKAKWIPQTDGTGGFWDLWHYQEQLDA FEYLVIAHNGKCAARLAKSAGEALAPVARLLETKFGASIRGGNTPRYMQL CSLFVLMVVLDEPVSLPGRERFEGAFVEGVSELSWVAEQGGKMGQDLGGG TEGGRAAWVLVSSPGFAEQHKVPQENIPEDKAAEVTRLMLRAFRQALGMQ EKGEEGAETSPLVPAASVLQLWGAGNPISVADMPQEAPFVFQAATGCGVC GDWLLAPSIPAAATSGIALARHIARHHAAKINGDRKVLEEDVGLRCGFKA VQGARPIASFPGDKAPVVEAVSPKPGRGEGGGGRGGGGGGRGRGGGGGGG GRGGGGNHSGGRGGGGGKPKKHQQPQQPKKKTDM* back to topmRNA from alignment at chr4:421356..423110+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01350.1 ID=NO04G01350.1|Name=NO04G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp|location=Sequence derived from alignment at chr4:421356..423110+ (Nannochloropsis oceanica) ATGCGGACACCATATCTTTCCTTTCTCTTGGTCGCAGTCCTCTTCGCCGC
CACCACAGTCACCATCACTGCCCGCACCACAGCCGCCTTCACCACTTCCC
GCATCATGCCTCGCACCGGCACAGGAGGTGCGGCGGGTAAAGCCCTGAAT
GCTTGCCTGCAACTGAAACAAAAGCATTCCCGCACTCCCACCGTCGGCAT
GTCTGCCGCGGCCAGTCCGAATGGTCGCGTGGCCGTCATCGGCGCGGGCA
TCTCTGGCCTGGCGTGTTCCCGCGAGCTCAAGGCCCAAGGGATGGACGTG
CTGCTCTTTGACACGGGCCGCTTGGCTCCTGGAGGGCGTTGCTCGAGCAA
GACGGTGGTGATAGATGGCGGGAAGACCAACGTGTTGTTTGATCATTCAG
CGCAGTTCCTGTCCGCTCCTATTTCCCCCTCCCCACCCTCCTCCCCCTCT
GCCACTTGGGACAAATGGGTGCGAGAAATGGAAGCCCAAGGAATCCTCCG
TGAATGGGATAGCAAAAGCATAGGTATCCTTGAAAGAGGTGGAAAATTCA
TCCCACGTGCCTCCACCACCACCCCGCCGCAGCCCCGTGCGCTTGTAAGC
CCTCAAGGCATGCGCGCTATCCCGACTTACTTAGCTCAGGGCTTGCACAT
TGACCGCCCCAAATGGGTGTCAAAAGCGAAATGGATCCCCCAAACCGACG
GCACCGGTGGCTTTTGGGATCTATGGCATTACCAAGAGCAACTTGACGCC
TTTGAATACCTAGTCATTGCGCACAACGGGAAGTGCGCTGCCCGTCTTGC
CAAATCAGCAGGGGAGGCCCTGGCACCAGTTGCTCGCTTACTCGAAACAA
AGTTTGGGGCGAGCATTCGTGGAGGAAACACACCGAGATATATGCAGTTA
TGTAGTCTGTTCGTGCTCATGGTGGTGTTGGACGAACCTGTCTCCTTGCC
TGGCAGAGAGCGGTTTGAGGGGGCTTTTGTGGAAGGAGTGTCAGAGTTGT
CTTGGGTGGCGGAGCAGGGAGGGAAGATGGGCCAGGATCTAGGAGGAGGG
ACGGAGGGAGGGAGGGCGGCATGGGTTTTGGTGTCATCGCCGGGATTCGC
GGAGCAGCATAAGGTGCCTCAGGAGAATATCCCTGAAGACAAAGCGGCGG
AGGTGACTAGGCTGATGCTTCGTGCATTTCGGCAAGCCTTGGGCATGCAG
GAGAAAGGCGAAGAGGGTGCAGAGACATCACCTCTAGTACCTGCAGCATC
AGTCCTCCAGTTATGGGGCGCGGGGAATCCGATTTCTGTCGCGGACATGC
CCCAAGAGGCGCCCTTTGTTTTTCAGGCGGCAACAGGGTGTGGGGTATGC
GGCGATTGGTTGCTTGCACCTTCCATTCCCGCAGCCGCCACCTCAGGAAT
CGCCCTGGCACGGCATATAGCCAGGCATCACGCGGCGAAAATAAATGGAG
ACAGGAAGGTGTTGGAGGAGGATGTGGGGTTGAGGTGTGGGTTCAAAGCG
GTGCAAGGAGCGAGGCCGATTGCCTCTTTTCCCGGTGATAAGGCACCGGT
GGTGGAGGCGGTTTCGCCAAAGCCTGGGCGAGGAGAAGGGGGAGGAGGAA
GAGGAGGTGGAGGTGGTGGGAGAGGAAGAGGAGGTGGAGGTGGTGGAGGG
GGAAGAGGAGGGGGAGGGAATCATAGTGGTGGTAGGGGGGGAGGAGGGGG
GAAACCGAAAAAACATCAGCAGCCGCAGCAGCCCAAAAAGAAGACAGACA
TGTAA back to topCoding sequence (CDS) from alignment at chr4:421356..423110+ >NO04G01350.1 ID=NO04G01350.1|Name=NO04G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1755bp|location=Sequence derived from alignment at chr4:421356..423110+ (Nannochloropsis oceanica) ATGCGGACACCATATCTTTCCTTTCTCTTGGTCGCAGTCCTCTTCGCCGC CACCACAGTCACCATCACTGCCCGCACCACAGCCGCCTTCACCACTTCCC GCATCATGCCTCGCACCGGCACAGGAGGTGCGGCGGGTAAAGCCCTGAAT GCTTGCCTGCAACTGAAACAAAAGCATTCCCGCACTCCCACCGTCGGCAT GTCTGCCGCGGCCAGTCCGAATGGTCGCGTGGCCGTCATCGGCGCGGGCA TCTCTGGCCTGGCGTGTTCCCGCGAGCTCAAGGCCCAAGGGATGGACGTG CTGCTCTTTGACACGGGCCGCTTGGCTCCTGGAGGGCGTTGCTCGAGCAA GACGGTGGTGATAGATGGCGGGAAGACCAACGTGTTGTTTGATCATTCAG CGCAGTTCCTGTCCGCTCCTATTTCCCCCTCCCCACCCTCCTCCCCCTCT GCCACTTGGGACAAATGGGTGCGAGAAATGGAAGCCCAAGGAATCCTCCG TGAATGGGATAGCAAAAGCATAGGTATCCTTGAAAGAGGTGGAAAATTCA TCCCACGTGCCTCCACCACCACCCCGCCGCAGCCCCGTGCGCTTGTAAGC CCTCAAGGCATGCGCGCTATCCCGACTTACTTAGCTCAGGGCTTGCACAT TGACCGCCCCAAATGGGTGTCAAAAGCGAAATGGATCCCCCAAACCGACG GCACCGGTGGCTTTTGGGATCTATGGCATTACCAAGAGCAACTTGACGCC TTTGAATACCTAGTCATTGCGCACAACGGGAAGTGCGCTGCCCGTCTTGC CAAATCAGCAGGGGAGGCCCTGGCACCAGTTGCTCGCTTACTCGAAACAA AGTTTGGGGCGAGCATTCGTGGAGGAAACACACCGAGATATATGCAGTTA TGTAGTCTGTTCGTGCTCATGGTGGTGTTGGACGAACCTGTCTCCTTGCC TGGCAGAGAGCGGTTTGAGGGGGCTTTTGTGGAAGGAGTGTCAGAGTTGT CTTGGGTGGCGGAGCAGGGAGGGAAGATGGGCCAGGATCTAGGAGGAGGG ACGGAGGGAGGGAGGGCGGCATGGGTTTTGGTGTCATCGCCGGGATTCGC GGAGCAGCATAAGGTGCCTCAGGAGAATATCCCTGAAGACAAAGCGGCGG AGGTGACTAGGCTGATGCTTCGTGCATTTCGGCAAGCCTTGGGCATGCAG GAGAAAGGCGAAGAGGGTGCAGAGACATCACCTCTAGTACCTGCAGCATC AGTCCTCCAGTTATGGGGCGCGGGGAATCCGATTTCTGTCGCGGACATGC CCCAAGAGGCGCCCTTTGTTTTTCAGGCGGCAACAGGGTGTGGGGTATGC GGCGATTGGTTGCTTGCACCTTCCATTCCCGCAGCCGCCACCTCAGGAAT CGCCCTGGCACGGCATATAGCCAGGCATCACGCGGCGAAAATAAATGGAG ACAGGAAGGTGTTGGAGGAGGATGTGGGGTTGAGGTGTGGGTTCAAAGCG GTGCAAGGAGCGAGGCCGATTGCCTCTTTTCCCGGTGATAAGGCACCGGT GGTGGAGGCGGTTTCGCCAAAGCCTGGGCGAGGAGAAGGGGGAGGAGGAA GAGGAGGTGGAGGTGGTGGGAGAGGAAGAGGAGGTGGAGGTGGTGGAGGG GGAAGAGGAGGGGGAGGGAATCATAGTGGTGGTAGGGGGGGAGGAGGGGG GAAACCGAAAAAACATCAGCAGCCGCAGCAGCCCAAAAAGAAGACAGACA TGTAA back to top
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