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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:385876..388071 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01230.1 vs.
Match: EWM29715.1 (alpha- -mannosyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 206.8 bits (525), Expect = 2.000e-49 Identity = 143/411 (34.79%), Postives = 197/411 (47.93%), Query Frame = 0
Query: 228 RGVVISASGTVPRLAAGAYITAYLIRKVFNSDLPIEIYHVGEREAFDPELKTHLIALGNLQVLDLVVVLRDKFGTAVSQAGAKAARADAAKQMAGEGRRTDDEEEYETPQRGGEQTVDADSHLYYLMPSIRQLASYAAKPYTVLASSFQENVLFDAGAVPFLDPEMLLSLADYTELGFADFRDYVPSSSHKWDWIPEEFCVDTDAVVEYYRGTEGDSSCVLFDKARNWDALLVTAILNGPLQHITYNKMNGDKDTWVMALSYTRQGKLPPLRTLPGFLFIDYEGNGEARKIHGQLQLLKVGMDGGDEYMMGAKALWQAPPIDAKGFLIPLYFNNQLFNFTQWEYNKGWTYIGSYDDYGSLYNPPTSLSPDCRPVPVDGLDPLVAPMEI--AFDGVVEALRAINS-THCGCR 636
RG+VI+ASG + A GA++T++L+R+V +LPIEIY VGE E F LRDK K R + + G + Y+ S L +L R+L SYAAKPY + A+ F+E +LFDAG +PF +PE L + + GF FRDY + W ++ E+C D D + GTE DSSCVL K R WDALLVT +NGPLQ TY ++NGDKDTW +A + T Q +T PG+ R+ +L LL G + + G + P +A G ++PLY NNQL N T++ + G ++DYG P C V+ L L P E+ D V EAL + + C C+
Sbjct: 235 RGIVITASGRISGQAIGAFVTSFLLRRVLGCELPIEIYFVGEHEIF-------------------STALRDKI------LELKDVRVSSLLDVLGS------DPFYQ-------------SKLKHLHVPDRRLRSYAAKPYALYAAPFEEVLLFDAGVIPFANPENFFGLDSFRDHGFHIFRDYRELDRNAWGFVEHEYCTDMDELHGLLAGTEADSSCVLLHKGRAWDALLVTMAMNGPLQPFTYARLNGDKDTWALAAALTYQ-NFSMAQTTPGYFM---------REARPELTLLDSAYAGWAQPIRGQVQFRRDP--EAVGGVVPLYVNNQLLNMTEYPGMRHRLAFGLWEDYG---------YPFCGWRAVNAL--LRPPPEVFNVMDAVGEALHTVGAPDECLCK 578
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01230.1 ID=NO04G01230.1|Name=NO04G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2054bp
ATGACGGGTGTCATAGACAGCAGAAATGCTGTGGTACGTAGGCATAGTTT
TACAGACAACGAGGAGCGGAAGGAAGGCGGGGGGGGCGCCTCAACCATAC
TGCAAATTGGGATTGAAGCAGAAGACGAGGCACCTTTCCTGGCCGGACCT
GCTGCGCGTCGCGGCCGCCGCAGCAGCGCTTCCATGGCTTGGCTGGGCCT
CCGCTACCTGCTCACATGGCGGAACATGCTGATTGTGAAAGTGGGAAGCG
TAATCCTTTTCATGCTAACTCGAGCGTACGTCTCTCGTCGAGATCCGCCG
CAAAATTACTCTCACGTGCACGCGTCGCCACGGCATGCAGCAGCGCAGCA
GCAGAATCAGCAGAGTCAGCAGAACCGGCAGCAGCAGCAGCAGCAGCGAC
GACAACAACCACAAGACCAACAGCACCAAAGGCGTCCGGAGGTGTACAAG
CTTCAGCCAGGAATGTGGAGCCGCAGCTACAAGCTTTTTCAAGACAGCAT
TCACCACATGCGCCATAGCTGGGTGAAGCATGGCGCGGCGCCTGGACAAG
TTTCGGTGGTTGGGCCGATGCCTGCACGTTGTGCTTGGCCGGGAAATTTA
TCTGCCTCGTCTTCACATTTCTTCCTTGGTGGACAGCACTTTGACTACTT
CCCACCTCCTATGATGAGGACACTGCAACGTCGAGGGGTGGTCATCAGCG
CGTCAGGCACCGTTCCCCGTCTCGCCGCAGGAGCTTACATTACTGCCTAC
TTAATCCGCAAAGTTTTTAATTCTGACTTGCCCATTGAAATTTACCACGT
CGGTGAGCGCGAAGCTTTTGATCCTGAGCTTAAAACCCACCTTATTGCCC
TCGGTAATTTGCAAGTCCTCGACCTGGTGGTGGTTCTACGGGACAAATTC
GGCACCGCCGTAAGTCAAGCTGGAGCCAAGGCAGCTAGGGCTGATGCCGC
AAAACAAATGGCCGGGGAAGGTAGAAGAACTGACGACGAGGAGGAATACG
AGACCCCGCAGCGAGGTGGGGAGCAGACTGTCGACGCCGATAGCCACCTC
TATTATCTCATGCCTTCGATCAGGCAGCTTGCTTCTTATGCGGCCAAACC
TTACACCGTTCTTGCGTCATCCTTCCAAGAAAATGTGCTCTTTGACGCAG
GAGCTGTCCCGTTCCTAGACCCGGAGATGCTTTTAAGCTTGGCTGACTAC
ACGGAGTTGGGCTTTGCAGATTTTCGAGATTATGTCCCTTCGTCTTCGCA
CAAGTGGGACTGGATTCCTGAAGAGTTTTGTGTTGATACGGATGCAGTGG
TTGAGTACTATCGGGGCACGGAAGGTGACAGCAGCTGTGTCCTCTTTGAT
AAGGCCCGAAATTGGGACGCGTTGCTTGTGACTGCAATTTTGAACGGGCC
CTTGCAACATATTACGTACAACAAAATGAATGGGGATAAAGACACCTGGG
TTATGGCGTTGTCCTATACGCGACAGGGGAAACTTCCACCACTACGCACG
CTGCCGGGCTTTCTCTTCATCGATTACGAGGGAAATGGTGAAGCAAGGAA
GATTCACGGGCAGTTGCAACTTCTCAAGGTGGGCATGGACGGGGGCGATG
AATACATGATGGGCGCCAAGGCCCTCTGGCAGGCGCCGCCAATTGATGCC
AAGGGTTTTTTAATTCCGCTTTATTTTAATAACCAGCTGTTCAATTTTAC
GCAATGGGAGTATAACAAGGGCTGGACCTATATCGGCAGCTATGATGACT
ACGGCTCGCTCTACAATCCGCCCACATCCCTGTCGCCCGACTGCCGCCCC
GTGCCTGTGGACGGCCTGGACCCACTAGTAGCGCCCATGGAAATCGCCTT
TGACGGGGTGGTGGAGGCCTTGAGGGCCATAAACTCGACACATTGCGGAT
GTCGGGATGATTGGCCTACGGCGTGTGTGACATTTGTATACTAATTAGAA
GCAAAGACAGAGGAAGGGATTTATATGTTCACTGCACAAACGCAACCGCA
AAGAAAAGAGAGATATAGGAAATCAGAGAGGAAGTTCAGGCAAAGACAAA
CACG back to topprotein sequence of NO04G01230.1 >NO04G01230.1-protein ID=NO04G01230.1-protein|Name=NO04G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=648bp
MTGVIDSRNAVVRRHSFTDNEERKEGGGGASTILQIGIEAEDEAPFLAGP
AARRGRRSSASMAWLGLRYLLTWRNMLIVKVGSVILFMLTRAYVSRRDPP
QNYSHVHASPRHAAAQQQNQQSQQNRQQQQQQRRQQPQDQQHQRRPEVYK
LQPGMWSRSYKLFQDSIHHMRHSWVKHGAAPGQVSVVGPMPARCAWPGNL
SASSSHFFLGGQHFDYFPPPMMRTLQRRGVVISASGTVPRLAAGAYITAY
LIRKVFNSDLPIEIYHVGEREAFDPELKTHLIALGNLQVLDLVVVLRDKF
GTAVSQAGAKAARADAAKQMAGEGRRTDDEEEYETPQRGGEQTVDADSHL
YYLMPSIRQLASYAAKPYTVLASSFQENVLFDAGAVPFLDPEMLLSLADY
TELGFADFRDYVPSSSHKWDWIPEEFCVDTDAVVEYYRGTEGDSSCVLFD
KARNWDALLVTAILNGPLQHITYNKMNGDKDTWVMALSYTRQGKLPPLRT
LPGFLFIDYEGNGEARKIHGQLQLLKVGMDGGDEYMMGAKALWQAPPIDA
KGFLIPLYFNNQLFNFTQWEYNKGWTYIGSYDDYGSLYNPPTSLSPDCRP
VPVDGLDPLVAPMEIAFDGVVEALRAINSTHCGCRDDWPTACVTFVY* back to topmRNA from alignment at chr4:385876..388071- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01230.1 ID=NO04G01230.1|Name=NO04G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp|location=Sequence derived from alignment at chr4:385876..388071- (Nannochloropsis oceanica)
ATGACGGGTGTCATAGACAGCAGAAATGCTGTGGTACGTAGGCATAGTTT
TACAGACAACGAGGAGCGGAAGGAAGGCGGGGGGGGCGCCTCAACCATAC
TGCAAATTGGGATTGAAGCAGAAGACGAGGCACCTTTCCTGGCCGGACCT
GCTGCGCGTCGCGGCCGCCGCAGCAGCGCTTCCATGGCTTGGCTGGGCCT
CCGCTACCTGCTCACATGGCGGAACATGCTGATTGTGAAAGTGGGAAGCG
TAATCCTTTTCATGCTAACTCGAGCGTACGTCTCTCGTCGAGATCCGCCG
CAAAATTACTCTCACGTGCACGCGTCGCCACGGCATGCAGCAGCGCAGCA
GCAGAATCAGCAGAGTCAGCAGAACCGGCAGCAGCAGCAGCAGCAGCGAC
GACAACAACCACAAGACCAACAGCACCAAAGGCGTCCGGAGGTGTACAAG
CTTCAGCCAGGAATGTGGAGCCGCAGCTACAAGCTTTTTCAAGACAGCAT
TCACCACATGCGCCATAGCTGGGTGAAGCATGGCGCGGCGCCTGGACAAG
TTTCGGTGGTTGGGCCGATGCCTGCACGTTGTGCTTGGCCGGGAAATTTA
TCTGCCTCGTCTTCACATTTCTTCCTTGGTGGACAGCACTTTGACTACTT
CCCACCTCCTATGATGAGGACACTGCAACGTCGAGGGGTGGTCATCAGCG
CGTCAGGCACCGTTCCCCGTCTCGCCGCAGGAGCTTACATTACTGCCTAC
TTAATCCGCAAAGTTTTTAATTCTGACTTGCCCATTGAAATTTACCACGT
CGGTGAGCGCGAAGCTTTTGATCCTGAGCTTAAAACCCACCTTATTGCCC
TCGGTAATTTGCAAGTCCTCGACCTGGTGGTGGTTCTACGGGACAAATTC
GGCACCGCCGTAAGTCAAGCTGGAGCCAAGGCAGCTAGGGCTGATGCCGC
AAAACAAATGGCCGGGGAAGGTAGAAGAACTGACGACGAGGAGGAATACG
AGACCCCGCAGCGAGGTGGGGAGCAGACTGTCGACGCCGATAGCCACCTC
TATTATCTCATGCCTTCGATCAGGCAGCTTGCTTCTTATGCGGCCAAACC
TTACACCGTTCTTGCGTCATCCTTCCAAGAAAATGTGCTCTTTGACGCAG
GAGCTGTCCCGTTCCTAGACCCGGAGATGCTTTTAAGCTTGGCTGACTAC
ACGGAGTTGGGCTTTGCAGATTTTCGAGATTATGTCCCTTCGTCTTCGCA
CAAGTGGGACTGGATTCCTGAAGAGTTTTGTGTTGATACGGATGCAGTGG
TTGAGTACTATCGGGGCACGGAAGGTGACAGCAGCTGTGTCCTCTTTGAT
AAGGCCCGAAATTGGGACGCGTTGCTTGTGACTGCAATTTTGAACGGGCC
CTTGCAACATATTACGTACAACAAAATGAATGGGGATAAAGACACCTGGG
TTATGGCGTTGTCCTATACGCGACAGGGGAAACTTCCACCACTACGCACG
CTGCCGGGCTTTCTCTTCATCGATTACGAGGGAAATGGTGAAGCAAGGAA
GATTCACGGGCAGTTGCAACTTCTCAAGGTGGGCATGGACGGGGGCGATG
AATACATGATGGGCGCCAAGGCCCTCTGGCAGGCGCCGCCAATTGATGCC
AAGGGTTTTTTAATTCCGCTTTATTTTAATAACCAGCTGTGTAAGTAAGT
CAGTGGAGTGCGACACACGAGACATACTCCAAAAGGCGGAATATGTGCAT
AAATTGTATCTTGAATGTGACTCGAGGTTCTGCGGCGCTTTATTTGGCAA
GGTCTAATCTTCTTTCATTCACACATAAACAGTCAATTTTACGCAATGGG
AGTATAACAAGGGCTGGACCTATATCGGCAGCTATGATGACTACGGCTCG
CTCTACAATCCGCCCACATCCCTGTCGCCCGACTGCCGCCCCGTGCCTGT
GGACGGCCTGGACCCACTAGTAGCGCCCATGGAAATCGCCTTTGACGGGG
TGGTGGAGGCCTTGAGGGCCATAAACTCGACACATTGCGGATGTCGGGAT
GATTGGCCTACGGCGTGTGTGACATTTGTATACTAATTAGAAGCAAAGAC
AGAGGAAGGGATTTATATGTTCACTGCACAAACGCAACCGCAAAGAAAAG
AGAGATATAGGAAATCAGAGAGGAAGTTCAGGCAAAGACAAACACG back to topCoding sequence (CDS) from alignment at chr4:385876..388071- >NO04G01230.1 ID=NO04G01230.1|Name=NO04G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=1944bp|location=Sequence derived from alignment at chr4:385876..388071- (Nannochloropsis oceanica)
ATGACGGGTGTCATAGACAGCAGAAATGCTGTGGTACGTAGGCATAGTTT
TACAGACAACGAGGAGCGGAAGGAAGGCGGGGGGGGCGCCTCAACCATAC
TGCAAATTGGGATTGAAGCAGAAGACGAGGCACCTTTCCTGGCCGGACCT
GCTGCGCGTCGCGGCCGCCGCAGCAGCGCTTCCATGGCTTGGCTGGGCCT
CCGCTACCTGCTCACATGGCGGAACATGCTGATTGTGAAAGTGGGAAGCG
TAATCCTTTTCATGCTAACTCGAGCGTACGTCTCTCGTCGAGATCCGCCG
CAAAATTACTCTCACGTGCACGCGTCGCCACGGCATGCAGCAGCGCAGCA
GCAGAATCAGCAGAGTCAGCAGAACCGGCAGCAGCAGCAGCAGCAGCGAC
GACAACAACCACAAGACCAACAGCACCAAAGGCGTCCGGAGGTGTACAAG
CTTCAGCCAGGAATGTGGAGCCGCAGCTACAAGCTTTTTCAAGACAGCAT
TCACCACATGCGCCATAGCTGGGTGAAGCATGGCGCGGCGCCTGGACAAG
TTTCGGTGGTTGGGCCGATGCCTGCACGTTGTGCTTGGCCGGGAAATTTA
TCTGCCTCGTCTTCACATTTCTTCCTTGGTGGACAGCACTTTGACTACTT
CCCACCTCCTATGATGAGGACACTGCAACGTCGAGGGGTGGTCATCAGCG
CGTCAGGCACCGTTCCCCGTCTCGCCGCAGGAGCTTACATTACTGCCTAC
TTAATCCGCAAAGTTTTTAATTCTGACTTGCCCATTGAAATTTACCACGT
CGGTGAGCGCGAAGCTTTTGATCCTGAGCTTAAAACCCACCTTATTGCCC
TCGGTAATTTGCAAGTCCTCGACCTGGTGGTGGTTCTACGGGACAAATTC
GGCACCGCCGTAAGTCAAGCTGGAGCCAAGGCAGCTAGGGCTGATGCCGC
AAAACAAATGGCCGGGGAAGGTAGAAGAACTGACGACGAGGAGGAATACG
AGACCCCGCAGCGAGGTGGGGAGCAGACTGTCGACGCCGATAGCCACCTC
TATTATCTCATGCCTTCGATCAGGCAGCTTGCTTCTTATGCGGCCAAACC
TTACACCGTTCTTGCGTCATCCTTCCAAGAAAATGTGCTCTTTGACGCAG
GAGCTGTCCCGTTCCTAGACCCGGAGATGCTTTTAAGCTTGGCTGACTAC
ACGGAGTTGGGCTTTGCAGATTTTCGAGATTATGTCCCTTCGTCTTCGCA
CAAGTGGGACTGGATTCCTGAAGAGTTTTGTGTTGATACGGATGCAGTGG
TTGAGTACTATCGGGGCACGGAAGGTGACAGCAGCTGTGTCCTCTTTGAT
AAGGCCCGAAATTGGGACGCGTTGCTTGTGACTGCAATTTTGAACGGGCC
CTTGCAACATATTACGTACAACAAAATGAATGGGGATAAAGACACCTGGG
TTATGGCGTTGTCCTATACGCGACAGGGGAAACTTCCACCACTACGCACG
CTGCCGGGCTTTCTCTTCATCGATTACGAGGGAAATGGTGAAGCAAGGAA
GATTCACGGGCAGTTGCAACTTCTCAAGGTGGGCATGGACGGGGGCGATG
AATACATGATGGGCGCCAAGGCCCTCTGGCAGGCGCCGCCAATTGATGCC
AAGGGTTTTTTAATTCCGCTTTATTTTAATAACCAGCTGTTCAATTTTAC
GCAATGGGAGTATAACAAGGGCTGGACCTATATCGGCAGCTATGATGACT
ACGGCTCGCTCTACAATCCGCCCACATCCCTGTCGCCCGACTGCCGCCCC
GTGCCTGTGGACGGCCTGGACCCACTAGTAGCGCCCATGGAAATCGCCTT
TGACGGGGTGGTGGAGGCCTTGAGGGCCATAAACTCGACACATTGCGGAT
GTCGGGATGATTGGCCTACGGCGTGTGTGACATTTGTATACTAA back to top
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