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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:81646..83492 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G00200.1 vs.
Match: EWM28424.1 (Protein of unknown function DUF707 [Nannochloropsis gaditana]) HSP 1 Score: 515.0 bits (1325), Expect = 1.900e-142 Identity = 242/363 (66.67%), Postives = 284/363 (78.24%), Query Frame = 0
Query: 4 TSPVAASSSTNAPPSEACPSYHATALQPPHQGRRKPGECVGPRGSVWSERGFNYYLFRDMFYPYEKGQSEFKSLVLFTAGRSAMANIDGLVRLWGLDNFDYVLMHFDDSATEWNQFDWYKHTVGITAQNQAKFWFYKRFASPWLVSGYRYIHFVDSDAGSPPDRPFNLTTYENFLSDRDLLIAQPAITKVGRSSDHKVCQVHNHTLYRTTSVVENGPFYSVSQQAYACYWEMIDSNAVSGWGPDVCWCQYLHEVCGFPLESACSIIDAFPLDHLDKKTASAHKFRGKDYWQYGFEEWASYEKRMKELLVSKFQKTAGYFKTLKEWPLEG-----GVGRMGAEEREERRRRWEEERVKEDARIL 362
+S + S ++ P E CPSY A PH GRR+PGECVGPRGSVW ERGFNY+ RDMF+PYE+ S F+SLV+FTAGRSAM NID LVR WG ++FDYVLMH+DDS++EWN+FDWYKH V IT Q QAKFWFYKRFA+PWLV GYRY+HFVDSDAGSPP RPFNLT YENFLSD LLIAQPAI K GRSSDH VC+ HN TLYR TSVVENGP YSVSQ+AYACYWEMID++AVSGWGPD CWCQYLHEVCG+P+ES CS+ID FP++HL+ KTAS +RGK Y++YGF+EW Y KRM +LL S FQ++A F+T + PL GV + + R ERR+ EE R +DAR+L
Sbjct: 92 SSDPSHSPCSSVPLREPCPSYPAIPSSKPHLGRRRPGECVGPRGSVWDERGFNYFPNRDMFFPYEEEDSSFRSLVIFTAGRSAMENIDNLVRSWGFEHFDYVLMHYDDSSSEWNRFDWYKHAVAITGQQQAKFWFYKRFATPWLVRGYRYVHFVDSDAGSPPSRPFNLTQYENFLSDHGLLIAQPAIIKAGRSSDHDVCREHNDTLYRVTSVVENGPLYSVSQEAYACYWEMIDADAVSGWGPDACWCQYLHEVCGYPVESVCSVIDVFPIEHLNGKTASESSYRGKKYYEYGFKEWERYGKRMDKLLRSPFQRSAAQFRTFRSLPLPAERWVDGVSKPVIDVR-ERRKMQEEARRAKDARLL 453
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G00200.1 ID=NO04G00200.1|Name=NO04G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp ATGATTATCACTTCTCCTGTGGCTGCATCTTCCTCCACAAATGCTCCTCC CTCCGAAGCCTGCCCTTCCTACCATGCCACCGCTCTGCAACCCCCGCACC AGGGCCGTCGCAAGCCGGGGGAATGCGTTGGACCGCGTGGAAGTGTATGG TCGGAGCGAGGTTTCAATTACTACCTGTTTCGCGACATGTTTTATCCGTA CGAGAAGGGTCAGTCTGAATTCAAGAGCTTGGTGTTGTTCACGGCGGGCA GGAGTGCGATGGCGAATATAGATGGGCTGGTCCGGTTGTGGGGATTGGAT AATTTTGACTATGTGCTGATGCATTTTGATGACTCGGCGACAGAGTGGAA TCAGTTCGACTGGTACAAGCACACTGTTGGTATCACAGCCCAGAACCAGG CCAAGTTCTGGTTCTACAAGCGCTTCGCCTCGCCCTGGCTCGTCTCCGGC TACAGATACATTCATTTTGTCGACTCGGACGCCGGCTCTCCCCCTGACCG TCCCTTCAACCTGACTACATATGAAAACTTCCTGTCCGACCGCGACCTGC TCATCGCCCAGCCGGCCATCACCAAGGTTGGGCGCTCGAGCGACCATAAG GTGTGTCAGGTGCACAACCACACTCTTTATCGCACAACCAGCGTCGTTGA AAACGGTCCATTCTACTCTGTCTCGCAACAGGCTTATGCGTGCTACTGGG AAATGATCGACAGCAACGCCGTCAGTGGCTGGGGGCCGGACGTGTGCTGG TGCCAGTACCTTCATGAGGTGTGTGGCTTCCCCCTGGAGAGCGCCTGTAG CATCATCGACGCATTTCCCTTGGACCACTTGGACAAGAAGACGGCGAGCG CCCACAAGTTCCGAGGGAAAGACTACTGGCAATACGGCTTTGAGGAATGG GCGTCGTATGAAAAGCGGATGAAGGAGCTGCTGGTTAGTAAGTTCCAGAA GACTGCCGGGTATTTTAAAACGCTGAAGGAATGGCCGTTAGAGGGGGGGG TAGGGAGAATGGGCGCGGAGGAGAGAGAGGAGAGGAGGAGGAGGTGGGAG GAGGAGAGGGTGAAAGAGGATGCGAGGATTTTGAAATGA back to topprotein sequence of NO04G00200.1 >NO04G00200.1-protein ID=NO04G00200.1-protein|Name=NO04G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp MIITSPVAASSSTNAPPSEACPSYHATALQPPHQGRRKPGECVGPRGSVW SERGFNYYLFRDMFYPYEKGQSEFKSLVLFTAGRSAMANIDGLVRLWGLD NFDYVLMHFDDSATEWNQFDWYKHTVGITAQNQAKFWFYKRFASPWLVSG YRYIHFVDSDAGSPPDRPFNLTTYENFLSDRDLLIAQPAITKVGRSSDHK VCQVHNHTLYRTTSVVENGPFYSVSQQAYACYWEMIDSNAVSGWGPDVCW CQYLHEVCGFPLESACSIIDAFPLDHLDKKTASAHKFRGKDYWQYGFEEW ASYEKRMKELLVSKFQKTAGYFKTLKEWPLEGGVGRMGAEEREERRRRWE EERVKEDARILK* back to topmRNA from alignment at chr4:81646..83492+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G00200.1 ID=NO04G00200.1|Name=NO04G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp|location=Sequence derived from alignment at chr4:81646..83492+ (Nannochloropsis oceanica) ATGATTATCACTTCTCCTGTGGCTGCATCTTCCTCCACAAATGCTCCTCC
CTCCGAAGCCTGCCCTTCCTACCATGCCACCGCTCTGCAACCCCCGCACC
AGGGCCGTCGCAAGCCGGGGGAATGCGTTGGACCGCGTGGAAGTGTATGG
TCGGAGCGAGGTTTCAATTACTACCTGTTTCGCGACATGTTTTATCCGTA
CGAGAAGGGTCAGTCTGAATTCAAGAGCTTGGTGTTGTTCACGGCGGGCA
GGAGTGCGATGGCGAATATAGATGGGCTGGTCCGGTTGTGGGGATTGGAT
AATTTTGACTATGTGCTGATGCATTTTGATGACTCGGCGACAGAGTGGAA
TCAGTAAGTGCGGCATTCTCTTCTCTCTCTTCTCCCTTGTGAACTGTCGT
CGGGTTGTTGCCCTTGTCCTTGCTGTGAGGAATCTTGATGGGCTGATCAG
GCTGTAGGGGTTGCTCACAGAATTGAAAGGAAACTTCGATGACCGGGTGA
CAGATGGGAATAAGTTCTGCTTCTTCCTCGACGTCATTTCATGTGTGGTG
TAGGAGGAGTGTTTATGATTCGAGTGCTGGAAATGAAAAAAAAAACATTC
TAACATTGCTCCCCCTCCCTGCCTTGCCCGCAAGGTTCGACTGGTACAAG
CACACTGTTGGTATCACAGCCCAGAACCAGGCCAAGTTCTGGTTCTACAA
GCGCTTCGCCTCGCCCTGGCTCGTCTCCGGCTACAGGTAGAGAAGTGTAG
GAGGAAAGGAGGAAAAGGCATGAGAATGATATAAAGATGCATTTTATTAT
CCACATTCTCACGAGATGGAGAAATGAATCCATTTCGTTTTGTGGATTCC
GAAACCGGCTGTTCCCCCGACCACAATCCTTTACCCGCTGCCAACGCTCT
CACATCTCCATCATTCCCTCTTCACCTCCTCTTACTCATACCCTCCTTCA
GATACATTCATTTTGTCGACTCGGACGCCGGCTCTCCCCCTGACCGTCCC
TTCAACCTGACTACATATGAAAACTTCCTGTCCGACCGCGACCTGCTCAT
CGCCCAGCCGGCCATCACCAAGGTAAAGAAGGCAAAGGAAGAAGTAGACA
GAAAATGTTTTTTTTTAAGTAGAATAGTAGAGAAAGAAAGGGCGTGTTAT
ATCACCTTAGTCATCTTTCTCTCCTTTCCCTTCCCCCCCTTCCTCCCCTT
TTTTTCTCCAGGTTGGGCGCTCGAGCGACCATAAGGTGTGTCAGGTGCAC
AACCACACTCTTTATCGCACAACCAGCGTCGTTGAAAACGGTCCATTCTA
CTCTGTCTCGCAACAGGTGAGGAGAAAATTGGAAATGTTGGAAGGAGGGA
GGGAAGGGAAGGGGGATACAATCTACATGTCAACAAGAGAAGAGAAGGTG
AAATAAGAGCACGTTCTCCCTCCCTTCTTCCCTCCTTAGGCTTATGCGTG
CTACTGGGAAATGATCGACAGCAACGCCGTCAGTGGCTGGGGGCCGGACG
TGTGCTGGTGCCAGTACCTTCATGAGGTGTGTGGCTTCCCCCTGGAGAGC
GCCTGTAGCATCATCGACGCATTTCCCTTGGACCACTTGGACAAGAAGAC
GGCGAGCGCCCACAAGTTCCGAGGGAAAGACTACTGGCAATACGGCTTTG
AGGAATGGGCGTCGTATGAAAAGCGGATGAAGGAGCTGCTGGTTAGTAAG
TTCCAGAAGACTGCCGGGTATTTTAAAACGCTGAAGGAATGGCCGTTAGA
GGGGGGGGTAGGGAGAATGGGCGCGGAGGAGAGAGAGGAGAGGAGGAGGA
GGTGGGAGGAGGAGAGGGTGAAAGAGGATGCGAGGATTTTGAAATGA back to topCoding sequence (CDS) from alignment at chr4:81646..83492+ >NO04G00200.1 ID=NO04G00200.1|Name=NO04G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr4:81646..83492+ (Nannochloropsis oceanica) ATGATTATCACTTCTCCTGTGGCTGCATCTTCCTCCACAAATGCTCCTCC CTCCGAAGCCTGCCCTTCCTACCATGCCACCGCTCTGCAACCCCCGCACC AGGGCCGTCGCAAGCCGGGGGAATGCGTTGGACCGCGTGGAAGTGTATGG TCGGAGCGAGGTTTCAATTACTACCTGTTTCGCGACATGTTTTATCCGTA CGAGAAGGGTCAGTCTGAATTCAAGAGCTTGGTGTTGTTCACGGCGGGCA GGAGTGCGATGGCGAATATAGATGGGCTGGTCCGGTTGTGGGGATTGGAT AATTTTGACTATGTGCTGATGCATTTTGATGACTCGGCGACAGAGTGGAA TCAGTTCGACTGGTACAAGCACACTGTTGGTATCACAGCCCAGAACCAGG CCAAGTTCTGGTTCTACAAGCGCTTCGCCTCGCCCTGGCTCGTCTCCGGC TACAGATACATTCATTTTGTCGACTCGGACGCCGGCTCTCCCCCTGACCG TCCCTTCAACCTGACTACATATGAAAACTTCCTGTCCGACCGCGACCTGC TCATCGCCCAGCCGGCCATCACCAAGGTTGGGCGCTCGAGCGACCATAAG GTGTGTCAGGTGCACAACCACACTCTTTATCGCACAACCAGCGTCGTTGA AAACGGTCCATTCTACTCTGTCTCGCAACAGGCTTATGCGTGCTACTGGG AAATGATCGACAGCAACGCCGTCAGTGGCTGGGGGCCGGACGTGTGCTGG TGCCAGTACCTTCATGAGGTGTGTGGCTTCCCCCTGGAGAGCGCCTGTAG CATCATCGACGCATTTCCCTTGGACCACTTGGACAAGAAGACGGCGAGCG CCCACAAGTTCCGAGGGAAAGACTACTGGCAATACGGCTTTGAGGAATGG GCGTCGTATGAAAAGCGGATGAAGGAGCTGCTGGTTAGTAAGTTCCAGAA GACTGCCGGGTATTTTAAAACGCTGAAGGAATGGCCGTTAGAGGGGGGGG TAGGGAGAATGGGCGCGGAGGAGAGAGAGGAGAGGAGGAGGAGGTGGGAG GAGGAGAGGGTGAAAGAGGATGCGAGGATTTTGAAATGA back to top
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