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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1605815..1608134 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05600.2 vs.
Match: EWM30033.1 (lipase family protein [Nannochloropsis gaditana]) HSP 1 Score: 357.1 bits (915), Expect = 4.600e-95 Identity = 162/246 (65.85%), Postives = 197/246 (80.08%), Query Frame = 0
Query: 2 QVTRVYDSEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILTPWPEDGCVHCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSLGAALAVLCMLDLLALSYPVTQTTTFGQPRVGNKEFSSFF-NQTIIPSIPFFRLVHHRDPVPHLPPQSLGFHHSPFEVFYSEDESSYVICDPTGEDKHCSNQYYIDANINDHLSYLGVLFGAEELEGRMQEISSLRGVEVNEGGRVAA 247
+V RVYD+ HNGNGFVGWDP +GV++V+FAGTDTTS+ NWIDD+D + TPWP +GC C+VHAGFL TY AL+ QL P ++AL+ HPQAP+W+TGHSLGAALAVLCM+DLL+LSYPV FGQPRVGN+ FSSF Q+ S+ F+RLVHHRDPVPHLPP S GFHHSPFEVFY+++E+ Y ICD TGEDKHCS+ Y ID +I DHL+YLGVLFG EE+EGR+QE+ G E+ V+A
Sbjct: 105 EVRRVYDNVHNGNGFVGWDPVEGVVVVSFAGTDTTSVANWIDDLDEVKTPWPLEGCQECKVHAGFLTTYSALRPQLQPLVEALVRDHPQAPVWVTGHSLGAALAVLCMVDLLSLSYPVRAVVNFGQPRVGNQHFSSFVAAQSASLSLCFYRLVHHRDPVPHLPPASFGFHHSPFEVFYTKNETYYHICDATGEDKHCSDHYLIDPSIKDHLNYLGVLFGGEEVEGRLQELMHSTGWEMEASVLVSA 350
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05600.2 ID=NO03G05600.2|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG ACGTGGTTATGCAGGTGACGCGTGTGTACGACAGCGAGCACAATGGGAAT GGCTTCGTGGGATGGGACCCTGATAAAGGTGTTATTATAGTTGCGTTTGC GGGCACGGACACGACGAGCCTGAAAAACTGGATCGACGACATTGATAGCA TCCTCACGCCCTGGCCGGAGGATGGGTGTGTGCACTGCAGGGTCCACGCA GGATTCCTTGCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCAT CCAGGCCCTGCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGAC ACTCTCTCGGAGCTGCCCTGGCCGTGTTGTGCATGCTGGATCTGCTCGCT CTCTCATATCCCGTCACGCAGACGACTACCTTCGGCCAGCCGCGCGTGGG GAACAAGGAGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCC CCTTCTTCCGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCG CAATCCCTGGGCTTCCACCACTCGCCTTTCGAAGTGTTCTACTCCGAAGA CGAATCATCCTACGTCATATGTGACCCCACGGGCGAGGATAAGCATTGCT CTAACCAGTACTACATCGACGCCAACATTAACGATCATCTCAGTTATCTT GGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCTC CTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTAT CATCCTTGTAAAAAAAAGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAGG GGGGAAGGGTGAAAGCAATAGAATGCATGTTTCATATGATGACAAAAAAG ATCGTAGGATAGGGTGGCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTAA CCGGTTTGTTGTAATGCGT back to topprotein sequence of NO03G05600.2 >NO03G05600.2-protein ID=NO03G05600.2-protein|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp MQVTRVYDSEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILT PWPEDGCVHCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSL GAALAVLCMLDLLALSYPVTQTTTFGQPRVGNKEFSSFFNQTIIPSIPFF RLVHHRDPVPHLPPQSLGFHHSPFEVFYSEDESSYVICDPTGEDKHCSNQ YYIDANINDHLSYLGVLFGAEELEGRMQEISSLRGVEVNEGGRVAALSSL * back to topmRNA from alignment at chr3:1605815..1608134- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05600.2 ID=NO03G05600.2|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica) CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA
GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC
CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA
GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT
TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG
ACGTGGTTATGCAGGTGCGAAAGGCAAATGGGTGGGTGGGGCGGACAGGG
AAGGCACGTATACGTTGCTCTGCTGCCTTGTTTCCCAGACGTGCGATGGC
CTATACCATACCCTAAATGCGCTCTCTTAACTCTTTCAATCTCCACTCAG
TGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCGTGTGTACGACAGCG
AGCACAATGGGAATGGCTTCGTGGGATGGGACCCTGATAAAGGTGAGGGA
AACGGAAGAGAGGGAGGACATGGCAGAAAGTGTATGGTAATATGGAGAGT
ACGATGTGATGAAATTAGATAGATTGAATCACTTTACATTGAGGCCTTGC
ATGTAAGCTCATCTGCGTATATGCGCCCTCCCTTTCCTATCAGGTGTTAT
TATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTGAAAAACTGGATCG
ACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGATGGGTGTGTGGTG
AGTGCGGAGGAAGAGAGGGAAGCAACGAGTGAAGGGAGGAAGAGTGGGAG
GCAGCGAGTAAAGAGAGGGAAAGAGGGAGGGCTTTCTGTTCTTGTTGGTC
ACCAGGGGGTGGCTTGTGGCCAAGGCATCGGACATAAGGCATCCCTACCT
ATCAGCCTCCCTCCCTTTCCCAGCACTGCAGGGTCCACGCAGGATTCCTT
GCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCCT
GCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGTAAGGACTAGG
GAGGCAGGGAGGGAGGGAGGGAGGGAGCGATTGCCAAACGCGGTACGACC
GATCATATTTCTCCATCCCTCAACGATAGATAAGGAATTGGGGAGGGAGT
GGGCCGGCATGATAGCCTTCACCCATCCAGATTTCTTAAGCGCCTGCTCC
TGCCCCTCCTTCCCTCCCTCCCTCCTTCCCCCCCTCACTCCTTCCCTCCC
TCCTTCCCTCCCTCCCTATTTTCCAAGGACACTCTCTCGGAGCTGCCCTG
GCCGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCA
GACGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGGAGGTGAGGGAGG
GAGGGAGGGGGGATGGAGAGGGTCCCCTATCTGTACGACGCGCATAGCAT
ACCATTGATGTCTGTTTTTTTCCCTCTTTCGGTCCTCTTTCCCTTCCCCT
TTCAGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCCCCTTC
TTCCGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCGCAATG
TACGTCCGAGGAAGGAGGGAGGGAGGGAGGAAGACATGGAGGCTCCAGTG
CCCTAACACGTGCCATCAGACTGTCGAATAACGTGTACCCATATATACAC
CTTCATTCTCGCTTTCTCTTAACCCTCCCTCCGTCCCTTCCACCCCTTCT
TCCCTCTTTCCGCCCAGCCCTGGGCTTCCACCACTCGCCTTTCGAAGTGT
TCTACTCCGAAGACGAATCATCCTACGTCATATGTGACCCCACGGGCGAG
GATAAGCATTGCTCTAACCAGTACTACATCGACGCCAACATTAACGATCA
TCTCAGTTATCTTGGTATGTCCTGCCCTCCCTCCTCCCCTCCTTCCCCGT
CCTCTCCGTTCTTTTGTGTGATGACAGTATCAACTGCACATAATGCTCTA
TCTTCCCCCCCCCCTTTCCTTCTTCCCTCCCTCCTTCCCTCCCTTCCTCT
AGGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCT
CCTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTA
TCATCCTTGTAAAAAAAAGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAG
GGGGGAAGGGTGAAAGCAATAGAATGCATGTTTCATATGATGACAAAAAA
GATCGTAGGATAGGGTGGCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTA
ACCGGTTTGTTGTAATGCGT back to topCoding sequence (CDS) from alignment at chr3:1605815..1608134- >NO03G05600.2 ID=NO03G05600.2|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica) ATGCAGGTGACGCGTGTGTACGACAGCGAGCACAATGGGAATGGCTTCGT GGGATGGGACCCTGATAAAGGTGTTATTATAGTTGCGTTTGCGGGCACGG ACACGACGAGCCTGAAAAACTGGATCGACGACATTGATAGCATCCTCACG CCCTGGCCGGAGGATGGGTGTGTGCACTGCAGGGTCCACGCAGGATTCCT TGCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCC TGCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGACACTCTCTC GGAGCTGCCCTGGCCGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATA TCCCGTCACGCAGACGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGG AGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCCCCTTCTTC CGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCGCAATCCCT GGGCTTCCACCACTCGCCTTTCGAAGTGTTCTACTCCGAAGACGAATCAT CCTACGTCATATGTGACCCCACGGGCGAGGATAAGCATTGCTCTAACCAG TACTACATCGACGCCAACATTAACGATCATCTCAGTTATCTTGGTGTGCT TTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCTCCTCGTTAC GAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTATCATCCTTG TAA back to top
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