NO03G05600.2, NO03G05600.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05600.2
Unique NameNO03G05600.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1169
Alignment locationchr3:1605815..1608134 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1605815..1608134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G05600.2 vs.
Match: EWM30033.1 (lipase family protein [Nannochloropsis gaditana])

HSP 1 Score: 357.1 bits (915), Expect = 4.600e-95
Identity = 162/246 (65.85%), Postives = 197/246 (80.08%), Query Frame = 0
Query:    2 QVTRVYDSEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILTPWPEDGCVHCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSLGAALAVLCMLDLLALSYPVTQTTTFGQPRVGNKEFSSFF-NQTIIPSIPFFRLVHHRDPVPHLPPQSLGFHHSPFEVFYSEDESSYVICDPTGEDKHCSNQYYIDANINDHLSYLGVLFGAEELEGRMQEISSLRGVEVNEGGRVAA 247
            +V RVYD+ HNGNGFVGWDP +GV++V+FAGTDTTS+ NWIDD+D + TPWP +GC  C+VHAGFL TY AL+ QL P ++AL+  HPQAP+W+TGHSLGAALAVLCM+DLL+LSYPV     FGQPRVGN+ FSSF   Q+   S+ F+RLVHHRDPVPHLPP S GFHHSPFEVFY+++E+ Y ICD TGEDKHCS+ Y ID +I DHL+YLGVLFG EE+EGR+QE+    G E+     V+A
Sbjct:  105 EVRRVYDNVHNGNGFVGWDPVEGVVVVSFAGTDTTSVANWIDDLDEVKTPWPLEGCQECKVHAGFLTTYSALRPQLQPLVEALVRDHPQAPVWVTGHSLGAALAVLCMVDLLSLSYPVRAVVNFGQPRVGNQHFSSFVAAQSASLSLCFYRLVHHRDPVPHLPPASFGFHHSPFEVFYTKNETYYHICDATGEDKHCSDHYLIDPSIKDHLNYLGVLFGGEEVEGRLQELMHSTGWEMEASVLVSA 350          
The following BLAST results are available for this feature:
BLAST of NO03G05600.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30033.14.600e-9565.85lipase family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05600NO03G05600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05600.2NO03G05600.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05600.2.cds1NO03G05600.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds2NO03G05600.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds3NO03G05600.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds4NO03G05600.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds5NO03G05600.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds6NO03G05600.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds7NO03G05600.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.2.cds8NO03G05600.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05600.2 ID=NO03G05600.2|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp
CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA
GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC
CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA
GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT
TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG
ACGTGGTTATGCAGGTGACGCGTGTGTACGACAGCGAGCACAATGGGAAT
GGCTTCGTGGGATGGGACCCTGATAAAGGTGTTATTATAGTTGCGTTTGC
GGGCACGGACACGACGAGCCTGAAAAACTGGATCGACGACATTGATAGCA
TCCTCACGCCCTGGCCGGAGGATGGGTGTGTGCACTGCAGGGTCCACGCA
GGATTCCTTGCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCAT
CCAGGCCCTGCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGAC
ACTCTCTCGGAGCTGCCCTGGCCGTGTTGTGCATGCTGGATCTGCTCGCT
CTCTCATATCCCGTCACGCAGACGACTACCTTCGGCCAGCCGCGCGTGGG
GAACAAGGAGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCC
CCTTCTTCCGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCG
CAATCCCTGGGCTTCCACCACTCGCCTTTCGAAGTGTTCTACTCCGAAGA
CGAATCATCCTACGTCATATGTGACCCCACGGGCGAGGATAAGCATTGCT
CTAACCAGTACTACATCGACGCCAACATTAACGATCATCTCAGTTATCTT
GGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCTC
CTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTAT
CATCCTTGTAAAAAAAAGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAGG
GGGGAAGGGTGAAAGCAATAGAATGCATGTTTCATATGATGACAAAAAAG
ATCGTAGGATAGGGTGGCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTAA
CCGGTTTGTTGTAATGCGT
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protein sequence of NO03G05600.2

>NO03G05600.2-protein ID=NO03G05600.2-protein|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MQVTRVYDSEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILT
PWPEDGCVHCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSL
GAALAVLCMLDLLALSYPVTQTTTFGQPRVGNKEFSSFFNQTIIPSIPFF
RLVHHRDPVPHLPPQSLGFHHSPFEVFYSEDESSYVICDPTGEDKHCSNQ
YYIDANINDHLSYLGVLFGAEELEGRMQEISSLRGVEVNEGGRVAALSSL
*
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mRNA from alignment at chr3:1605815..1608134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05600.2 ID=NO03G05600.2|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica)
CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG ACGTGGTTATGCAGGTGCGAAAGGCAAATGGGTGGGTGGGGCGGACAGGG AAGGCACGTATACGTTGCTCTGCTGCCTTGTTTCCCAGACGTGCGATGGC CTATACCATACCCTAAATGCGCTCTCTTAACTCTTTCAATCTCCACTCAG TGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCGTGTGTACGACAGCG AGCACAATGGGAATGGCTTCGTGGGATGGGACCCTGATAAAGGTGAGGGA AACGGAAGAGAGGGAGGACATGGCAGAAAGTGTATGGTAATATGGAGAGT ACGATGTGATGAAATTAGATAGATTGAATCACTTTACATTGAGGCCTTGC ATGTAAGCTCATCTGCGTATATGCGCCCTCCCTTTCCTATCAGGTGTTAT TATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTGAAAAACTGGATCG ACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGATGGGTGTGTGGTG AGTGCGGAGGAAGAGAGGGAAGCAACGAGTGAAGGGAGGAAGAGTGGGAG GCAGCGAGTAAAGAGAGGGAAAGAGGGAGGGCTTTCTGTTCTTGTTGGTC ACCAGGGGGTGGCTTGTGGCCAAGGCATCGGACATAAGGCATCCCTACCT ATCAGCCTCCCTCCCTTTCCCAGCACTGCAGGGTCCACGCAGGATTCCTT GCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCCT GCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGTAAGGACTAGG GAGGCAGGGAGGGAGGGAGGGAGGGAGCGATTGCCAAACGCGGTACGACC GATCATATTTCTCCATCCCTCAACGATAGATAAGGAATTGGGGAGGGAGT GGGCCGGCATGATAGCCTTCACCCATCCAGATTTCTTAAGCGCCTGCTCC TGCCCCTCCTTCCCTCCCTCCCTCCTTCCCCCCCTCACTCCTTCCCTCCC TCCTTCCCTCCCTCCCTATTTTCCAAGGACACTCTCTCGGAGCTGCCCTG GCCGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCA GACGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGGAGGTGAGGGAGG GAGGGAGGGGGGATGGAGAGGGTCCCCTATCTGTACGACGCGCATAGCAT ACCATTGATGTCTGTTTTTTTCCCTCTTTCGGTCCTCTTTCCCTTCCCCT TTCAGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCCCCTTC TTCCGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCGCAATG TACGTCCGAGGAAGGAGGGAGGGAGGGAGGAAGACATGGAGGCTCCAGTG CCCTAACACGTGCCATCAGACTGTCGAATAACGTGTACCCATATATACAC CTTCATTCTCGCTTTCTCTTAACCCTCCCTCCGTCCCTTCCACCCCTTCT TCCCTCTTTCCGCCCAGCCCTGGGCTTCCACCACTCGCCTTTCGAAGTGT TCTACTCCGAAGACGAATCATCCTACGTCATATGTGACCCCACGGGCGAG GATAAGCATTGCTCTAACCAGTACTACATCGACGCCAACATTAACGATCA TCTCAGTTATCTTGGTATGTCCTGCCCTCCCTCCTCCCCTCCTTCCCCGT CCTCTCCGTTCTTTTGTGTGATGACAGTATCAACTGCACATAATGCTCTA TCTTCCCCCCCCCCTTTCCTTCTTCCCTCCCTCCTTCCCTCCCTTCCTCT AGGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCT CCTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTA TCATCCTTGTAAAAAAAAGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAG GGGGGAAGGGTGAAAGCAATAGAATGCATGTTTCATATGATGACAAAAAA GATCGTAGGATAGGGTGGCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTA ACCGGTTTGTTGTAATGCGT
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Coding sequence (CDS) from alignment at chr3:1605815..1608134-

>NO03G05600.2 ID=NO03G05600.2|Name=NO03G05600.2|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica)
ATGCAGGTGACGCGTGTGTACGACAGCGAGCACAATGGGAATGGCTTCGT
GGGATGGGACCCTGATAAAGGTGTTATTATAGTTGCGTTTGCGGGCACGG
ACACGACGAGCCTGAAAAACTGGATCGACGACATTGATAGCATCCTCACG
CCCTGGCCGGAGGATGGGTGTGTGCACTGCAGGGTCCACGCAGGATTCCT
TGCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCC
TGCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGACACTCTCTC
GGAGCTGCCCTGGCCGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATA
TCCCGTCACGCAGACGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGG
AGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCCCCTTCTTC
CGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCGCAATCCCT
GGGCTTCCACCACTCGCCTTTCGAAGTGTTCTACTCCGAAGACGAATCAT
CCTACGTCATATGTGACCCCACGGGCGAGGATAAGCATTGCTCTAACCAG
TACTACATCGACGCCAACATTAACGATCATCTCAGTTATCTTGGTGTGCT
TTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCTCCTCGTTAC
GAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTATCATCCTTG
TAA
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Synonyms
Publications