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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1497065..1499475 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05250.1 vs.
Match: EWM29966.1 (zeta-carotene desaturase [Nannochloropsis gaditana]) HSP 1 Score: 1058.9 bits (2737), Expect = 6.100e-306 Identity = 533/615 (86.67%), Postives = 564/615 (91.71%), Query Frame = 0
Query: 16 AMATLLFASSCTTSAFLLPATSPVSAPSSRLPTAGFRQRATTVMSSVITQPVEAIRGSDKEKLLDLSVLDRAMSGPPANLRVKNKNTEQLRVGIIGGGLGGLITAMDLAEAGHQVEIFEARRFAGGKVGSWVDKDGNHIEMGLHVFFGCYYNLFGIMKRLGIFESSLRLKDHTHSFINKGGRVGELDFRFGGIGAPINGLKAFATTTQLEIGDKIANAVALATSPVVKALFNFDAAMEDVRALDGISFSEWFLRKGGSRGSMTRMWDPIAYALGFIDCDNISARCMLTIFQLFAVRSEASVLRMCEGSPNTYLHEPILDYLKARGVKLHLNSRIQDLVYDTDAGSGKPTRVKGFTLSGKANTEDGKEAGAAGGVGVAGEERLFDCVVAACDVPGIQKLLPESFRKIQEFDNIYKLTAVPVTTVQLRFNGWVTELQDMEKMKEVSGDKSNGKAPGIDNLLYSADAEFSCFADLALTSPAEYYKEGEGTLLQCVLTPGDKWMPVSTEKIAEATLKQVLDLFPSARGLECTWTNVVKLGQSLYREAPGMDVYRPKQKSPVENFYLAGSYTYQDYIDSMEGATKSGLLCADVILRDAKEIKERAESQGVGAGKQAVMSA 631
A+ TL+ ++ +AFLLP T+ VS P A +T + T PVE +RGSDKEKLLDLSVLDRAMSGPPANLRVK+ +TE+LRVGIIGGGLGGLITAMDL+EAGH+VEIFEARRFAGGKVGSWVDKDGNHIEMGLHVFFGCYYNLFGIMKRLG+FESSLRLKDHTHSFINKGGRVGELDFRFGGIGAP+NGLKAFATT+QLEIGDKIANAVALATSPVVKALF+FDAAMEDVRALDGISFSEWFLRKGGSRGSMTRMWDPIAYALGFIDCD+ISARCMLTIFQLFAVRSEASVLRMCEGSPNTYLHEPIL YLKARGV LHLNSRIQDLVYDTDA +G P+RVKG LSGKANTEDGKEAGAAGGVG AGE+RLFDCVVAACDVPGIQKLLPESFRKIQEFDNIY+L AVPVTTVQLRFNGWVTEL D +MKE++GD SNG+APG+DNLLYSADAEFSCFADLALTSPAEYYKEGEG+LLQCVLTPGDKWMPVSTEKIAEATLKQVLDLFPSARGLECTWTNVVKLGQSLYREAPGMDVYRPKQKSPVENFYLAGSYTYQDYIDSMEGATKSGLLCAD ILRDAK IK RA S+ + AVMSA
Sbjct: 12 AVITLVQSTYSIATAFLLPHTTRVSQPHRSTSPA------STTRAPASTLPVEQVRGSDKEKLLDLSVLDRAMSGPPANLRVKDTSTERLRVGIIGGGLGGLITAMDLSEAGHEVEIFEARRFAGGKVGSWVDKDGNHIEMGLHVFFGCYYNLFGIMKRLGVFESSLRLKDHTHSFINKGGRVGELDFRFGGIGAPVNGLKAFATTSQLEIGDKIANAVALATSPVVKALFDFDAAMEDVRALDGISFSEWFLRKGGSRGSMTRMWDPIAYALGFIDCDHISARCMLTIFQLFAVRSEASVLRMCEGSPNTYLHEPILAYLKARGVTLHLNSRIQDLVYDTDASTGAPSRVKGLVLSGKANTEDGKEAGAAGGVGAAGEQRLFDCVVAACDVPGIQKLLPESFRKIQEFDNIYRLEAVPVTTVQLRFNGWVTELNDPVRMKEINGDFSNGRAPGLDNLLYSADAEFSCFADLALTSPAEYYKEGEGSLLQCVLTPGDKWMPVSTEKIAEATLKQVLDLFPSARGLECTWTNVVKLGQSLYREAPGMDVYRPKQKSPVENFYLAGSYTYQDYIDSMEGATKSGLLCADQILRDAKTIKARASSKEDMIKEAAVMSA 620
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05250.1 ID=NO03G05250.1|Name=NO03G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp AACTACAGGGACGACGGCCAGCAGCGCCATGACAAGCCCCATCAAGACAA GTAGAAGAGGCACGACCGCGGCCGCCATGGCCACGCTTCTCTTCGCCTCC TCCTGCACGACCTCGGCTTTCCTCCTCCCTGCCACCTCCCCCGTCTCCGC CCCCTCCTCCCGTCTCCCGACTGCAGGCTTTCGACAGAGGGCAACTACGG TAATGTCTTCTGTGATCACGCAACCGGTCGAGGCAATCCGTGGCTCGGAC AAGGAGAAGCTCTTGGATCTGTCCGTATTGGATCGTGCTATGTCTGGCCC TCCCGCCAACTTGCGGGTCAAGAACAAGAATACGGAGCAGCTTCGTGTAG GGATAATTGGTGGAGGCTTGGGGGGTTTAATTACGGCGATGGACTTGGCT GAGGCAGGTCACCAGGTCGAGATTTTTGAGGCGCGGCGTTTTGCGGGGGG GAAGGTCGGGTCGTGGGTGGACAAGGACGGGAACCACATTGAGATGGGCC TGCATGTCTTCTTCGGCTGTTACTACAACCTGTTTGGTATCATGAAGCGG CTGGGTATTTTCGAGTCCTCCCTCCGGCTCAAGGACCACACCCACTCCTT CATCAATAAGGGCGGGCGTGTGGGTGAGCTCGACTTCCGCTTTGGCGGCA TCGGTGCTCCTATCAATGGTCTCAAGGCCTTTGCCACCACAACGCAATTG GAAATCGGCGACAAAATTGCGAACGCTGTGGCGCTGGCTACGAGTCCTGT AGTGAAGGCGCTGTTTAATTTTGACGCGGCCATGGAGGATGTTCGGGCGT TAGACGGCATTTCCTTCTCCGAGTGGTTCTTGAGGAAGGGCGGGAGCAGG GGGAGCATGACGAGAATGTGGGACCCGATCGCGTATGCTTTGGGGTTCAT CGACTGTGACAACATCTCGGCCAGGTGCATGCTTACGATTTTCCAGCTCT TCGCCGTCAGGTCCGAGGCCTCGGTCTTGCGCATGTGTGAGGGTTCCCCT AACACCTACCTCCATGAACCTATCCTGGATTACCTCAAGGCACGAGGCGT GAAGTTACACTTGAATTCTCGTATTCAAGACTTGGTTTATGACACGGACG CGGGTTCGGGGAAGCCGACGCGGGTCAAGGGGTTTACCCTGTCGGGGAAG GCCAATACGGAGGACGGGAAGGAGGCGGGCGCCGCGGGAGGGGTGGGGGT TGCGGGGGAGGAGAGGCTGTTTGATTGTGTGGTGGCGGCCTGTGATGTTC CCGGTATTCAAAAGCTGCTGCCGGAGAGCTTTAGGAAGATTCAAGAGTTC GATAACATTTACAAACTGACTGCGGTGCCGGTGACCACGGTGCAACTCCG GTTTAACGGCTGGGTCACGGAACTCCAGGACATGGAGAAGATGAAGGAAG TCTCGGGGGACAAGTCCAATGGCAAGGCCCCGGGTATTGATAATCTTCTC TATAGTGCCGATGCCGAGTTCTCGTGTTTCGCCGACCTGGCCTTGACGAG CCCTGCAGAGTACTACAAGGAGGGAGAGGGCACGCTGCTGCAATGCGTCC TGACGCCGGGCGACAAGTGGATGCCTGTCTCGACCGAGAAAATTGCCGAG GCCACGTTGAAGCAAGTGCTTGACCTCTTCCCGTCGGCACGCGGGTTGGA GTGCACGTGGACGAACGTGGTAAAGCTGGGCCAGAGTCTGTATAGGGAAG CACCGGGGATGGACGTATACCGGCCGAAGCAGAAGAGTCCCGTGGAAAAC TTTTATTTGGCGGGCTCGTACACCTACCAGGACTACATCGATTCCATGGA GGGTGCAACGAAGAGCGGATTGTTGTGTGCAGATGTCATTTTGAGGGACG CGAAGGAGATCAAGGAGCGGGCAGAATCTCAGGGGGTAGGCGCGGGGAAA CAGGCAGTGATGTCGGCTTAAGGGAAGGGAGAGAGGAGGGAGGAAGAGGA GGAGGGAGGGTATTTACAGTAGAAAGTGTCGTCGATTGTGAGTGTGTGGC ATGGATGCGGGTGAGAGAGGTGTGTTGGACGTGTTTACGCCCGTCACACA TGCACTAGAGCGAGAGGAGAGAAAAGGGTAGAAAATTTAAAACTGGGAAA GAAAAGAAACAAGAAGAAGAAGAAGCAGAAAC back to topprotein sequence of NO03G05250.1 >NO03G05250.1-protein ID=NO03G05250.1-protein|Name=NO03G05250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp MTSPIKTSRRGTTAAAMATLLFASSCTTSAFLLPATSPVSAPSSRLPTAG FRQRATTVMSSVITQPVEAIRGSDKEKLLDLSVLDRAMSGPPANLRVKNK NTEQLRVGIIGGGLGGLITAMDLAEAGHQVEIFEARRFAGGKVGSWVDKD GNHIEMGLHVFFGCYYNLFGIMKRLGIFESSLRLKDHTHSFINKGGRVGE LDFRFGGIGAPINGLKAFATTTQLEIGDKIANAVALATSPVVKALFNFDA AMEDVRALDGISFSEWFLRKGGSRGSMTRMWDPIAYALGFIDCDNISARC MLTIFQLFAVRSEASVLRMCEGSPNTYLHEPILDYLKARGVKLHLNSRIQ DLVYDTDAGSGKPTRVKGFTLSGKANTEDGKEAGAAGGVGVAGEERLFDC VVAACDVPGIQKLLPESFRKIQEFDNIYKLTAVPVTTVQLRFNGWVTELQ DMEKMKEVSGDKSNGKAPGIDNLLYSADAEFSCFADLALTSPAEYYKEGE GTLLQCVLTPGDKWMPVSTEKIAEATLKQVLDLFPSARGLECTWTNVVKL GQSLYREAPGMDVYRPKQKSPVENFYLAGSYTYQDYIDSMEGATKSGLLC ADVILRDAKEIKERAESQGVGAGKQAVMSA* back to topmRNA from alignment at chr3:1497065..1499475- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05250.1 ID=NO03G05250.1|Name=NO03G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2411bp|location=Sequence derived from alignment at chr3:1497065..1499475- (Nannochloropsis oceanica) AACTACAGGGACGACGGCCAGCAGCGCCATGACAAGCCCCATCAAGACAA
GTAGAAGAGGCACGACCGCGGCCGCCATGGCCACGCTTCTCTTCGCCTCC
TCCTGCACGACCTCGGCTTTCCTCCTCCCTGCCACCTCCCCCGTCTCCGC
CCCCTCCTCCCGTCTCCCGACTGCAGGCTTTCGACAGAGGGCAACTACGG
TAATGTCTTCTGTGATCACGCAACCGGTCGAGGCAATCCGTGGCTCGGAC
AAGGAGAAGCTCTTGGATCTGTCCGTATTGGATCGTGCTATGTCTGGCCC
TCCCGCCAACTTGCGGGTCAAGAACAAGAATACGGAGCAGCTTCGTGTAG
GGATAATTGGTGGAGGCTTGGGGGGTTTAATTACGGCGATGGACTTGGCT
GAGGCAGGTCACCAGGTCGAGATTTTTGAGGCGCGGCGTTTTGCGGGGGG
GAAGGTCGGGTCGTGGGTGGACAAGGACGGGAACCACATTGAGATGGGTG
AGTTGAGAGAAGAGGGAGGGAACGGTAATGACGAAGAATTTATTTGTTTC
AATTGCATAAAATTCACTTTCTGCTCTTACAATATAACCCCTCATATCAT
CTCATCATTTCCCTTCCCCCTCCGCCCTTTTCCTTTCCCTCCCTACCGTT
CCCTCCCTCCCTTCCCCACGCACACAGGCCTGCATGTCTTCTTCGGCTGT
TACTACAACCTGTTTGGTATCATGAAGCGGCTGGGTATTTTCGAGTCCTC
CCTCCGGCTCAAGGACCACACCCACTCCTTCATCAATAAGGGCGGGCGTG
TGGGTGAGCTCGACTTCCGCTTTGGCGGCATCGGTGCTCCTATCAATGGT
CTCAAGGCCTTTGCCACCACAACGCAATTGGAAATCGGCGACAAAATTGC
GAACGCTGTGGCGCTGGCTACGAGTCCTGTAGTGAAGGCGCTGTTTAATT
TTGACGCGGCCATGGAGGATGTTCGGGCGTTAGACGGCATTTCCTTCTCC
GAGTGGTTCTTGAGGAAGGGCGGGAGCAGGGGGAGCATGACGAGAATGTG
GGACCCGATCGCGTATGCTTTGGGGTTCATCGACTGTGACAACATCTCGG
CCAGGTGCATGCTTACGATTTTCCAGCTCTTCGCCGTCAGGTCCGAGGCC
TCGGTCTTGCGCATGTGTGAGGGTTCCCCTAACACCTACCTCCATGAACC
TATCCTGGATTACCTCAAGGCACGAGGCGTGAAGTTACACTTGAATTCTC
GTATTCAAGACTTGGTTTATGACACGGACGCGGGTTCGGGGAAGCCGACG
CGGGTCAAGGGGTTTACCCTGTCGGGGAAGGCCAATACGGAGGACGGGAA
GGAGGCGGGCGCCGCGGGAGGGGTGGGGGTTGCGGGGGAGGAGAGGCTGT
TTGATTGTGTGGTGGCGGCCTGTGATGTTCCCGGTATTCAAAAGCTGCTG
CCGGAGAGCTTTAGGAAGATTCAAGAGTTCGATAACATTTACAAACTGAC
TGCGGTGCCGGTGACCACGGTAAGAGAGTGAGGGTTTTGAGTGTTGAGGT
GTGCAATCATGGCTAAGGACATTATATGTGGGTTTTTCCTCACCATCGCT
TCCTTCCTCTCTCCCCAGGTGCAACTCCGGTTTAACGGCTGGGTCACGGA
ACTCCAGGACATGGAGAAGATGAAGGAAGTCTCGGGGGACAAGTCCAATG
GCAAGGCCCCGGGTATTGATAATCTTCTCTATAGTGCCGATGCCGAGTTC
TCGTGTTTCGCCGACCTGGCCTTGACGAGCCCTGCAGAGTACTACAAGGA
GGGAGAGGGCACGCTGCTGCAATGCGTCCTGACGCCGGGCGACAAGTGGA
TGCCTGTCTCGACCGAGAAAATTGCCGAGGCCACGTTGAAGCAAGTGCTT
GACCTCTTCCCGTCGGCACGCGGGTTGGAGTGCACGTGGACGAACGTGGT
AAAGCTGGGCCAGAGTCTGTATAGGGAAGCACCGGGGATGGACGTATACC
GGCCGAAGCAGAAGAGTCCCGTGGAAAACTTTTATTTGGCGGGCTCGTAC
ACCTACCAGGACTACATCGATTCCATGGAGGGTGCAACGAAGAGCGGATT
GTTGTGTGCAGATGTCATTTTGAGGGACGCGAAGGAGATCAAGGAGCGGG
CAGAATCTCAGGGGGTAGGCGCGGGGAAACAGGCAGTGATGTCGGCTTAA
GGGAAGGGAGAGAGGAGGGAGGAAGAGGAGGAGGGAGGGTATTTACAGTA
GAAAGTGTCGTCGATTGTGAGTGTGTGGCATGGATGCGGGTGAGAGAGGT
GTGTTGGACGTGTTTACGCCCGTCACACATGCACTAGAGCGAGAGGAGAG
AAAAGGGTAGAAAATTTAAAACTGGGAAAGAAAAGAAACAAGAAGAAGAA
GAAGCAGAAAC back to topCoding sequence (CDS) from alignment at chr3:1497065..1499475- >NO03G05250.1 ID=NO03G05250.1|Name=NO03G05250.1|organism=Nannochloropsis oceanica|type=CDS|length=1893bp|location=Sequence derived from alignment at chr3:1497065..1499475- (Nannochloropsis oceanica) ATGACAAGCCCCATCAAGACAAGTAGAAGAGGCACGACCGCGGCCGCCAT GGCCACGCTTCTCTTCGCCTCCTCCTGCACGACCTCGGCTTTCCTCCTCC CTGCCACCTCCCCCGTCTCCGCCCCCTCCTCCCGTCTCCCGACTGCAGGC TTTCGACAGAGGGCAACTACGGTAATGTCTTCTGTGATCACGCAACCGGT CGAGGCAATCCGTGGCTCGGACAAGGAGAAGCTCTTGGATCTGTCCGTAT TGGATCGTGCTATGTCTGGCCCTCCCGCCAACTTGCGGGTCAAGAACAAG AATACGGAGCAGCTTCGTGTAGGGATAATTGGTGGAGGCTTGGGGGGTTT AATTACGGCGATGGACTTGGCTGAGGCAGGTCACCAGGTCGAGATTTTTG AGGCGCGGCGTTTTGCGGGGGGGAAGGTCGGGTCGTGGGTGGACAAGGAC GGGAACCACATTGAGATGGGCCTGCATGTCTTCTTCGGCTGTTACTACAA CCTGTTTGGTATCATGAAGCGGCTGGGTATTTTCGAGTCCTCCCTCCGGC TCAAGGACCACACCCACTCCTTCATCAATAAGGGCGGGCGTGTGGGTGAG CTCGACTTCCGCTTTGGCGGCATCGGTGCTCCTATCAATGGTCTCAAGGC CTTTGCCACCACAACGCAATTGGAAATCGGCGACAAAATTGCGAACGCTG TGGCGCTGGCTACGAGTCCTGTAGTGAAGGCGCTGTTTAATTTTGACGCG GCCATGGAGGATGTTCGGGCGTTAGACGGCATTTCCTTCTCCGAGTGGTT CTTGAGGAAGGGCGGGAGCAGGGGGAGCATGACGAGAATGTGGGACCCGA TCGCGTATGCTTTGGGGTTCATCGACTGTGACAACATCTCGGCCAGGTGC ATGCTTACGATTTTCCAGCTCTTCGCCGTCAGGTCCGAGGCCTCGGTCTT GCGCATGTGTGAGGGTTCCCCTAACACCTACCTCCATGAACCTATCCTGG ATTACCTCAAGGCACGAGGCGTGAAGTTACACTTGAATTCTCGTATTCAA GACTTGGTTTATGACACGGACGCGGGTTCGGGGAAGCCGACGCGGGTCAA GGGGTTTACCCTGTCGGGGAAGGCCAATACGGAGGACGGGAAGGAGGCGG GCGCCGCGGGAGGGGTGGGGGTTGCGGGGGAGGAGAGGCTGTTTGATTGT GTGGTGGCGGCCTGTGATGTTCCCGGTATTCAAAAGCTGCTGCCGGAGAG CTTTAGGAAGATTCAAGAGTTCGATAACATTTACAAACTGACTGCGGTGC CGGTGACCACGGTGCAACTCCGGTTTAACGGCTGGGTCACGGAACTCCAG GACATGGAGAAGATGAAGGAAGTCTCGGGGGACAAGTCCAATGGCAAGGC CCCGGGTATTGATAATCTTCTCTATAGTGCCGATGCCGAGTTCTCGTGTT TCGCCGACCTGGCCTTGACGAGCCCTGCAGAGTACTACAAGGAGGGAGAG GGCACGCTGCTGCAATGCGTCCTGACGCCGGGCGACAAGTGGATGCCTGT CTCGACCGAGAAAATTGCCGAGGCCACGTTGAAGCAAGTGCTTGACCTCT TCCCGTCGGCACGCGGGTTGGAGTGCACGTGGACGAACGTGGTAAAGCTG GGCCAGAGTCTGTATAGGGAAGCACCGGGGATGGACGTATACCGGCCGAA GCAGAAGAGTCCCGTGGAAAACTTTTATTTGGCGGGCTCGTACACCTACC AGGACTACATCGATTCCATGGAGGGTGCAACGAAGAGCGGATTGTTGTGT GCAGATGTCATTTTGAGGGACGCGAAGGAGATCAAGGAGCGGGCAGAATC TCAGGGGGTAGGCGCGGGGAAACAGGCAGTGATGTCGGCTTAA back to top
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