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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1353044..1355095 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G04760.1 vs.
Match: EWM29913.1 (hypothetical protein Naga_100035g20 [Nannochloropsis gaditana]) HSP 1 Score: 194.5 bits (493), Expect = 4.100e-46 Identity = 146/236 (61.86%), Postives = 163/236 (69.07%), Query Frame = 0
Query: 26 PAASAASAATNISASNNGSNNIFPMPQPRRREDLQQQQQQQQQQQQQQPITPLSVTSGMIQAPEVMGSPMDLSSSSDDESSRDSRRGEGSDDGSSCNGGESRGASTLNSQEDLEELGGGGGGGREGEGGSPMFGASSTASVAPSVLSFVTSGGGGGGGSSLAGGPTPSVVDSLLVVGSVATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSLLKPVSEPSGEGVGGKGGGGDE 262
P S ++N S + +IFPMPQP R+ QQQ QQ QQ ++SG AP + M+LSS+S+D SS EG D+GSSCNG ESRG STLNSQED++ELGG GGG REG G SP +GAS TAS APSVLSF+TSG GGG SS G T SVVDSL+VVGSVATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSS LKPVS P GG G GDE
Sbjct: 137 PLVSGPPGSSNTIGSGS---DIFPMPQPHPRKGQYQQQLSHLQQHQQ-------ISSGRGSAPVPTVAAMELSSNSEDSSSCSGSGDEGGDEGSSCNGIESRGGSTLNSQEDVDELGGPGGG-REGGGCSPSYGAS-TASTAPSVLSFMTSGAGGG--SSAGAGATASVVDSLVVVGSVATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSFLKPVSGPP----GGGGSNGDE 354
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G04760.1 ID=NO03G04760.1|Name=NO03G04760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp GGTTTTTCATAGTGATATTGCTGCATACTCTTGTCTCGTATGCTTTCTAA GTTGCCTACCTTTAGCGAAAATCTTTCTTTCCGCATCCACAAAAATGATC ATGCTCCCTTTACATACAATACTTCCACTACCTATTACATACTTCCACTT TTTCTGATTCGCTATATCTGCATCCCATCCTCCTTCTCCTCCTCTCCTTC TCTTTTGTTATGGCGTCTTCGCCAATCCGCCTCCGCTAGCTGAAGTGCTG GCTCTGGCTCGAATCATCAGCATGGGTCATGTCACACAAACTGAGTCGTG CTGCCTCTTGTGCTTGACAACACGCGCCTCTTGCATGTCAAAATATCCCG TAAATTATCTTCGCACCAACCACTTCATTGTATCCAACATGCTGCGCAGG CACTCGTCGTCATCCTTGTCGTCAAGACTAGCAAGCAAAGCCCAGCACTT TCTTTTTTGCTTAACGCTTGCGGTCACCCCCTTTCCCTCGCCCCGTCAAA CCCAACAACCAGTCCTGCCTCCATCATTACCACAACGCAAGCATGTCAAT CGCTAACATGGGCACCGCCCTGTCGGAAGAGGAGTTCCAGCAGTTGCAGG ACGTGGTGGCCTCGGCGAGGTAAGACAGTGTCCGGCGTGCTTTTTAATCA CCGAGCTTGGTCCTCTGTCTCGGGAGCGGCAATGAGGCATGACCATCTCT GACCTTGAATTGGCAATGTACAACCTCGTTTCCGTCGCAAACACCTTCAA TGCTCCTCCACATCTCTCTCCCGCCTTTCACCCTCCCTTATTCCCTCAAC CTGATTAACTCTCTCGTTACACCACAGTGACGACACCACCACGCCGCAGC TCGCCCTGTCCTTCTTCAAAGAACGAGTGACGGGCAAAGGCAACCGGAAA GCCCACCTTTCCGCCTCTCAACTCTCCCATCTCATCTCACTTACTACCTC CTTTGAGAGCAAGAAGTCTCTCGTTGTCCTGCTCGCACCCTACCTCTGCG CCGATGCCTCCAACTTCAAGGCCATCGTCGATCTTTTCCCCAGCATATCA GACCGCACGGAAATCAAGAATTTCTTCATGGCCAACAACCCCGCCAAACT GGCAGGTGATCCATCAGCATCCTCCATCCGCACCGACCCTGGCTCTCTCA TCCCGGCAGCTAGTGCTGCCTCTGCCGCTACGAACATCAGTGCCAGCAAC AACGGCAGCAACAACATCTTTCCTATGCCACAGCCACGTCGACGAGAGGA CCTTCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCCAA TCACCCCCTTGAGTGTGACCTCGGGTATGATTCAGGCACCTGAAGTGATG GGCTCGCCGATGGATTTAAGCAGCAGCAGCGACGACGAAAGCAGCAGAGA TAGCCGTCGGGGGGAAGGGAGCGATGATGGCAGCAGTTGTAATGGTGGGG AGAGCCGGGGAGCGAGCACACTCAATTCGCAGGAGGACTTGGAAGAGCTA GGGGGAGGAGGGGGGGGAGGCAGGGAGGGAGAAGGGGGTTCTCCTATGTT TGGTGCCAGCAGCACCGCATCGGTTGCCCCGAGTGTGTTGAGCTTTGTGA CGAGTGGAGGGGGAGGAGGTGGGGGAAGCAGCCTTGCTGGAGGGCCGACG CCGAGCGTGGTTGATAGTCTGTTGGTGGTAGGGTCGGTTGCCACCACGTT GTCCAGCTATGATTCTACGGGATCTTTGTCGACGATAGAAAGCAGTGCAT CGACAGAAGTCTCGCAACGACGGCCTTTTCAGCATCGATCTTCTTTGCTT AAGCCCGTGTCCGAGCCATCAGGGGAAGGAGTGGGAGGGAAAGGAGGAGG AGGGGACGAGGACAGGTAG back to topprotein sequence of NO03G04760.1 >NO03G04760.1-protein ID=NO03G04760.1-protein|Name=NO03G04760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp MANNPAKLAGDPSASSIRTDPGSLIPAASAASAATNISASNNGSNNIFPM PQPRRREDLQQQQQQQQQQQQQQPITPLSVTSGMIQAPEVMGSPMDLSSS SDDESSRDSRRGEGSDDGSSCNGGESRGASTLNSQEDLEELGGGGGGGRE GEGGSPMFGASSTASVAPSVLSFVTSGGGGGGGSSLAGGPTPSVVDSLLV VGSVATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSLLKPVSEPSGE GVGGKGGGGDEDR* back to topmRNA from alignment at chr3:1353044..1355095+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G04760.1 ID=NO03G04760.1|Name=NO03G04760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp|location=Sequence derived from alignment at chr3:1353044..1355095+ (Nannochloropsis oceanica) GGTTTTTCATAGTGATATTGCTGCATACTCTTGTCTCGTATGCTTTCTAA
GTTGCCTACCTTTAGCGAAAATCTTTCTTTCCGCATCCACAAAAATGATC
ATGCTCCCTTTACATACAATACTTCCACTACCTATTACATACTTCCACTT
TTTCTGATTCGCTATATCTGCATCCCATCCTCCTTCTCCTCCTCTCCTTC
TCTTTTGTTATGGCGTCTTCGCCAATCCGCCTCCGCTAGCTGAAGTGCTG
GCTCTGGCTCGAATCATCAGCATGGGTCATGTCACACAAACTGAGTCGTG
CTGCCTCTTGTGCTTGACAACACGCGCCTCTTGCATGTCAAAATATCCCG
TAAATTATCTTCGCACCAACCACTTCATTGTATCCAACATGCTGCGCAGG
CACTCGTCGTCATCCTTGTCGTCAAGACTAGCAAGCAAAGCCCAGCACTT
TCTTTTTTGCTTAACGCTTGCGGTCACCCCCTTTCCCTCGCCCCGTCAAA
CCCAACAACCAGTCCTGCCTCCATCATTACCACAACGCAAGCATGTCAAT
CGCTAACATGGGCACCGCCCTGTCGGAAGAGGAGTTCCAGCAGTTGCAGG
ACGTGGTGGCCTCGGCGAGGTAAGACAGTGTCCGGCGTGCTTTTTAATCA
CCGAGCTTGGTCCTCTGTCTCGGGAGCGGCAATGAGGCATGACCATCTCT
GACCTTGAATTGGCAATGTACAACCTCGTTTCCGTCGCAAACACCTTCAA
TGCTCCTCCACATCTCTCTCCCGCCTTTCACCCTCCCTTATTCCCTCAAC
CTGATTAACTCTCTCGTTACACCACAGTGACGACACCACCACGCCGCAGC
TCGCCCTGTCCTTCTTCAAAGAACGAGTGACGGGCAAAGGCAACCGGAAA
GCCCACCTTTCCGCCTCTCAACTCTCCCATCTCATCTCACTTACTACCTC
CTTTGAGAGCAAGAAGTCTCTCGTTGTCCTGCTCGCACCCTACCTCTGCG
CCGATGCCTCCAACTTCAAGGCCATCGTCGATCTTTTCCCCAGCATATCA
GACGTAAGTTCTGTCGTTGTACCTTGCGGCATGTTCGCGTAGTGCTATCC
TTGTGTTCATTCACGTAACTTCTTGAGAAGGGACGGACTGCCCTGCAAAC
TCCAGTGGTAGCTGCAACCCTCCACCGTAAATCTACACTCCTCTTCATTT
ATTTACCACCACCCACCACGCACCAACAATACACAGCGCACGGAAATCAA
GAATTTCTTCATGGCCAACAACCCCGCCAAACTGGCAGGTGATCCATCAG
CATCCTCCATCCGCACCGACCCTGGCTCTCTCATCCCGGCAGCTAGTGCT
GCCTCTGCCGCTACGAACATCAGTGCCAGCAACAACGGCAGCAACAACAT
CTTTCCTATGCCACAGCCACGTCGACGAGAGGACCTTCAGCAGCAGCAGC
AGCAACAACAACAGCAGCAGCAGCAGCAGCCAATCACCCCCTTGAGTGTG
ACCTCGGGTATGATTCAGGCACCTGAAGTGATGGGCTCGCCGATGGATTT
AAGCAGCAGCAGCGACGACGAAAGCAGCAGAGATAGCCGTCGGGGGGAAG
GGAGCGATGATGGCAGCAGTTGTAATGGTGGGGAGAGCCGGGGAGCGAGC
ACACTCAATTCGCAGGAGGACTTGGAAGAGCTAGGGGGAGGAGGGGGGGG
AGGCAGGGAGGGAGAAGGGGGTTCTCCTATGTTTGGTGCCAGCAGCACCG
CATCGGTTGCCCCGAGTGTGTTGAGCTTTGTGACGAGTGGAGGGGGAGGA
GGTGGGGGAAGCAGCCTTGCTGGAGGGCCGACGCCGAGCGTGGTTGATAG
TCTGTTGGTGGTAGGGTCGGTTGCCACCACGTTGTCCAGCTATGATTCTA
CGGGATCTTTGTCGACGATAGAAAGCAGTGCATCGACAGAAGTCTCGCAA
CGACGGCCTTTTCAGCATCGATCTTCTTTGCTTAAGCCCGTGTCCGAGCC
ATCAGGGGAAGGAGTGGGAGGGAAAGGAGGAGGAGGGGACGAGGACAGGT
AG back to topCoding sequence (CDS) from alignment at chr3:1353044..1355095+ >NO03G04760.1 ID=NO03G04760.1|Name=NO03G04760.1|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr3:1353044..1355095+ (Nannochloropsis oceanica) ATGGCCAACAACCCCGCCAAACTGGCAGGTGATCCATCAGCATCCTCCAT CCGCACCGACCCTGGCTCTCTCATCCCGGCAGCTAGTGCTGCCTCTGCCG CTACGAACATCAGTGCCAGCAACAACGGCAGCAACAACATCTTTCCTATG CCACAGCCACGTCGACGAGAGGACCTTCAGCAGCAGCAGCAGCAACAACA ACAGCAGCAGCAGCAGCAGCCAATCACCCCCTTGAGTGTGACCTCGGGTA TGATTCAGGCACCTGAAGTGATGGGCTCGCCGATGGATTTAAGCAGCAGC AGCGACGACGAAAGCAGCAGAGATAGCCGTCGGGGGGAAGGGAGCGATGA TGGCAGCAGTTGTAATGGTGGGGAGAGCCGGGGAGCGAGCACACTCAATT CGCAGGAGGACTTGGAAGAGCTAGGGGGAGGAGGGGGGGGAGGCAGGGAG GGAGAAGGGGGTTCTCCTATGTTTGGTGCCAGCAGCACCGCATCGGTTGC CCCGAGTGTGTTGAGCTTTGTGACGAGTGGAGGGGGAGGAGGTGGGGGAA GCAGCCTTGCTGGAGGGCCGACGCCGAGCGTGGTTGATAGTCTGTTGGTG GTAGGGTCGGTTGCCACCACGTTGTCCAGCTATGATTCTACGGGATCTTT GTCGACGATAGAAAGCAGTGCATCGACAGAAGTCTCGCAACGACGGCCTT TTCAGCATCGATCTTCTTTGCTTAAGCCCGTGTCCGAGCCATCAGGGGAA GGAGTGGGAGGGAAAGGAGGAGGAGGGGACGAGGACAGGTAG back to top
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