NO03G03980.1, NO03G03980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03980.1
Unique NameNO03G03980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1722
Alignment locationchr3:1161828..1163874 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1161828..1163874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03980.1 vs.
Match: EWM29817.1 (microcystin synthetase-associated thioesterase [Nannochloropsis gaditana])

HSP 1 Score: 623.2 bits (1606), Expect = 4.900e-175
Identity = 295/360 (81.94%), Postives = 323/360 (89.72%), Query Frame = 0 
Query:    1 MGVSGSKGCCMCCVPDKALMACGPAVPIAKELHSESAQVAPSGHGVH----HKGLGEAIQARTRCISACAVRCIHDHLPGHRHDHMKAPAVMREEEAKKWLLVKRKDFARVRMVCFPYAGGNSNFYKTWDFKETEMVLVELPGRNARYNEKAMTDVYSIAKKIASALDAVGYLKSKIPLVFFGHSFGAIVSTLVAQVLRNQYNYTPKHLIVSGCVPLHMRAGRPKFSVPNDNDLVTSLLDMGGITKEMAKNRDVVSQFLPALKGDYLAVDKYVYHEAEPLACPILALGSDQDMRVPQQETAEWARFTAGEFESRIFPGGHFFLKPLEKDVIAYISSVIFKDMTGPGAMALPGFILFDPNK 357
            MG + SKGCC+CCVPD AL +CGPAVPIAKE+   +   AP GHG H     +GLGEAIQ RTRCISACAVRCIHDHLPGHRHDH +APA MREEEA+KWL VKRKDFARVR+VCFPYAGGNSNFYKTWD KE EMV VELPGRNARYNEK +TDVY IAKKIA+AL  +GY++SKIPLVFFGHSFGAIVSTLVAQ+LRNQYNYTPKHL+VSGCVPLH+RAGRPKFSV ND++LV+SLLDMGGITKEMA+NRDVV+QFLPALKGDYLAVDKYVYHEA PL CPILALGSDQD+RVPQ ET EWARFT  EFESRIFPGGHFFLKPLEK+V+AY+SSVIF+D+TGPGA  LPGFILFDPNK
Sbjct:   41 MGCTSSKGCCLCCVPDAALKSCGPAVPIAKEI--TNGYPAPPGHGTHTPTHSQGLGEAIQTRTRCISACAVRCIHDHLPGHRHDHQRAPAKMREEEARKWLSVKRKDFARVRLVCFPYAGGNSNFYKTWDVKEAEMVTVELPGRNARYNEKVITDVYLIAKKIAAALAGLGYIESKIPLVFFGHSFGAIVSTLVAQILRNQYNYTPKHLVVSGCVPLHLRAGRPKFSVANDDELVSSLLDMGGITKEMARNRDVVTQFLPALKGDYLAVDKYVYHEAPPLDCPILALGSDQDLRVPQHETEEWARFTTKEFESRIFPGGHFFLKPLEKEVVAYVSSVIFRDLTGPGATDLPGFILFDPNK 398
The following BLAST results are available for this feature:
BLAST of NO03G03980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29817.14.900e-17581.94microcystin synthetase-associated thioesterase [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03980NO03G03980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03980.1NO03G03980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03980.1.cds1NO03G03980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03980.1.cds2NO03G03980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03980.1 ID=NO03G03980.1|Name=NO03G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp
CGGGCGGAACTCCGCTGTTCCACAGTAAACTGTGAAGTTAACTGTTTATC
TGTTTACTACTTTCTTTACTCCCTTTCTTCTTAAACAAATACGCACACAA
CAAGGACAACAACAACAACGAAAAAACAAGGCATACAATAGATTTAGAAG
AGGCCAATCTAGCTGAAAGCTAGTGCTGGCGTGTATGCGGGCTTCGTCGT
GCACACGCACTCGATGGCCCATCCCTCCAATATTTCTTGCATTGCCGCAA
CGCACACTCTCATCGTACTCAACCACGACCGCGCACACTACCACTACATT
ATAATAGGGAGGCCCTAGGGGAAGAGTCCTGTGCAGCCATCGTCGTTTAA
GTCGTCACCCTTCATTCTATTTCTTGTAAATGGGTGTCTCCGGCTCCAAG
GGCTGCTGCATGTGCTGTGTCCCCGACAAGGCCCTCATGGCCTGTGGACC
TGCCGTGCCCATTGCAAAGGAGCTGCACAGTGAATCTGCGCAGGTCGCGC
CCTCAGGCCATGGGGTCCATCATAAGGGGTTGGGCGAGGCAATCCAGGCC
CGGACACGTTGTATATCTGCGTGTGCTGTCCGCTGCATCCACGACCATTT
GCCAGGCCATCGACACGACCATATGAAGGCGCCAGCGGTGATGAGGGAGG
AAGAGGCGAAAAAGTGGCTGTTAGTCAAGCGCAAGGATTTTGCCCGGGTG
CGTATGGTTTGTTTTCCGTATGCAGGCGGGAACTCTAATTTCTACAAGAC
GTGGGATTTCAAGGAGACGGAGATGGTATTGGTGGAGCTGCCGGGGCGTA
ATGCCCGGTACAATGAAAAGGCCATGACAGACGTGTACTCAATCGCGAAG
AAGATTGCTTCGGCATTGGATGCGGTCGGGTATTTGAAGTCGAAGATTCC
GTTGGTGTTTTTCGGTCACAGCTTTGGTGCGATCGTGTCGACGTTGGTGG
CGCAAGTGTTGCGGAATCAGTATAATTATACACCCAAGCATTTGATTGTC
TCGGGTTGTGTACCCTTGCATATGAGGGCGGGGCGCCCGAAGTTCTCCGT
GCCAAACGATAATGATTTAGTGACGTCTCTGTTAGACATGGGGGGAATCA
CGAAGGAGATGGCCAAGAACCGAGATGTGGTCAGTCAGTTCCTCCCCGCG
TTGAAGGGAGATTACCTAGCGGTGGATAAGTATGTGTACCACGAAGCGGA
GCCCTTGGCCTGCCCGATTTTAGCCTTGGGCAGCGACCAAGACATGCGAG
TCCCCCAGCAAGAGACGGCCGAATGGGCTCGCTTCACGGCGGGGGAGTTT
GAGTCACGCATTTTCCCGGGCGGACATTTTTTCCTCAAGCCGTTGGAGAA
GGATGTAATTGCGTATATTTCTTCAGTTATTTTCAAGGACATGACGGGCC
CGGGGGCCATGGCATTGCCGGGATTCATCCTCTTTGATCCCAATAAGGTT
GAGTAAGAACGGGATGAGAAGTCGTAAGCGACAAGAAAAGTTGAGAATTA
CTGATATGGAACAACAATCAAATGTGCCTGTACATAAGGATTATGTACCC
CGAAGTTGAGAATAAAATATACGTGGCGGGAATACCTTTTAGATTCAGTG
TTCACGTGTGTGTTTCTGGGAGTGGTTGTATTGAAGGTAGTGCGGTGTAT
GGGAGACTTGAATAAGAGAAATGAAAGGAAATACAGTAATTTCTTGTCTG
TTGTGTTTGGTCCGTGCGATGG
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protein sequence of NO03G03980.1

>NO03G03980.1-protein ID=NO03G03980.1-protein|Name=NO03G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MGVSGSKGCCMCCVPDKALMACGPAVPIAKELHSESAQVAPSGHGVHHKG
LGEAIQARTRCISACAVRCIHDHLPGHRHDHMKAPAVMREEEAKKWLLVK
RKDFARVRMVCFPYAGGNSNFYKTWDFKETEMVLVELPGRNARYNEKAMT
DVYSIAKKIASALDAVGYLKSKIPLVFFGHSFGAIVSTLVAQVLRNQYNY
TPKHLIVSGCVPLHMRAGRPKFSVPNDNDLVTSLLDMGGITKEMAKNRDV
VSQFLPALKGDYLAVDKYVYHEAEPLACPILALGSDQDMRVPQQETAEWA
RFTAGEFESRIFPGGHFFLKPLEKDVIAYISSVIFKDMTGPGAMALPGFI
LFDPNKVE*
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mRNA from alignment at chr3:1161828..1163874+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03980.1 ID=NO03G03980.1|Name=NO03G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp|location=Sequence derived from alignment at chr3:1161828..1163874+ (Nannochloropsis oceanica)
CGGGCGGAACTCCGCTGTTCCACAGTAAACTGTGAAGTTAACTGTTTATC
TGTTTACTACTTTCTTTACTCCCTTTCTTCTTAAACAAATACGCACACAA
CAAGGACAACAACAACAACGAAAAAACAAGGCATACAATAGATTTAGAAG
AGGCCAATCTAGCTGAAAGCTAGTGCTGGCGTGTATGCGGGCTTCGTCGT
GCACACGCACTCGATGGCCCATCCCTCCAATATTTCTTGCATTGCCGCAA
CGCACACTCTCATCGTACTCAACCACGACCGCGCACACTACCACTACATT
ATAATAGGGAGGCCCTAGGGGAAGAGTCCTGTGCAGCCATCGTCGTTTAA
GTCGTCACCCTTCATTCTATTTCTTGTAAATGGGTAAGTGAAAGGGCGCG
CTGGGTCGCGGTAGGAGAAGAGAGACGAGTGAGAAGATAAGTGAAGATCG
GTCTAGAGACAATGCGAACTCAATATAGAACGACGAAGCTAGTCGTATGC
CCAAGTCCTGTCTTAGGGGATGACCATGTGTGCATGTCTTCCTTTTCCAG
TACCACTTGCCTGGCCGACCTCCCATTCACGGAGGGCATCGCTACATTCC
CACACATTTTTCCGCACATCCCATCATCTATCCCTACAGTCTTTAAAAAA
AAACATAACCTTTCTTCCAACCATTACTCCAATACCTTGCCCTATCCAAC
CCACATAGGTGTCTCCGGCTCCAAGGGCTGCTGCATGTGCTGTGTCCCCG
ACAAGGCCCTCATGGCCTGTGGACCTGCCGTGCCCATTGCAAAGGAGCTG
CACAGTGAATCTGCGCAGGTCGCGCCCTCAGGCCATGGGGTCCATCATAA
GGGGTTGGGCGAGGCAATCCAGGCCCGGACACGTTGTATATCTGCGTGTG
CTGTCCGCTGCATCCACGACCATTTGCCAGGCCATCGACACGACCATATG
AAGGCGCCAGCGGTGATGAGGGAGGAAGAGGCGAAAAAGTGGCTGTTAGT
CAAGCGCAAGGATTTTGCCCGGGTGCGTATGGTTTGTTTTCCGTATGCAG
GCGGGAACTCTAATTTCTACAAGACGTGGGATTTCAAGGAGACGGAGATG
GTATTGGTGGAGCTGCCGGGGCGTAATGCCCGGTACAATGAAAAGGCCAT
GACAGACGTGTACTCAATCGCGAAGAAGATTGCTTCGGCATTGGATGCGG
TCGGGTATTTGAAGTCGAAGATTCCGTTGGTGTTTTTCGGTCACAGCTTT
GGTGCGATCGTGTCGACGTTGGTGGCGCAAGTGTTGCGGAATCAGTATAA
TTATACACCCAAGCATTTGATTGTCTCGGGTTGTGTACCCTTGCATATGA
GGGCGGGGCGCCCGAAGTTCTCCGTGCCAAACGATAATGATTTAGTGACG
TCTCTGTTAGACATGGGGGGAATCACGAAGGAGATGGCCAAGAACCGAGA
TGTGGTCAGTCAGTTCCTCCCCGCGTTGAAGGGAGATTACCTAGCGGTGG
ATAAGTATGTGTACCACGAAGCGGAGCCCTTGGCCTGCCCGATTTTAGCC
TTGGGCAGCGACCAAGACATGCGAGTCCCCCAGCAAGAGACGGCCGAATG
GGCTCGCTTCACGGCGGGGGAGTTTGAGTCACGCATTTTCCCGGGCGGAC
ATTTTTTCCTCAAGCCGTTGGAGAAGGATGTAATTGCGTATATTTCTTCA
GTTATTTTCAAGGACATGACGGGCCCGGGGGCCATGGCATTGCCGGGATT
CATCCTCTTTGATCCCAATAAGGTTGAGTAAGAACGGGATGAGAAGTCGT
AAGCGACAAGAAAAGTTGAGAATTACTGATATGGAACAACAATCAAATGT
GCCTGTACATAAGGATTATGTACCCCGAAGTTGAGAATAAAATATACGTG
GCGGGAATACCTTTTAGATTCAGTGTTCACGTGTGTGTTTCTGGGAGTGG
TTGTATTGAAGGTAGTGCGGTGTATGGGAGACTTGAATAAGAGAAATGAA
AGGAAATACAGTAATTTCTTGTCTGTTGTGTTTGGTCCGTGCGATGG
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Coding sequence (CDS) from alignment at chr3:1161828..1163874+

>NO03G03980.1 ID=NO03G03980.1|Name=NO03G03980.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr3:1161828..1163874+ (Nannochloropsis oceanica)
ATGGGTGTCTCCGGCTCCAAGGGCTGCTGCATGTGCTGTGTCCCCGACAA
GGCCCTCATGGCCTGTGGACCTGCCGTGCCCATTGCAAAGGAGCTGCACA
GTGAATCTGCGCAGGTCGCGCCCTCAGGCCATGGGGTCCATCATAAGGGG
TTGGGCGAGGCAATCCAGGCCCGGACACGTTGTATATCTGCGTGTGCTGT
CCGCTGCATCCACGACCATTTGCCAGGCCATCGACACGACCATATGAAGG
CGCCAGCGGTGATGAGGGAGGAAGAGGCGAAAAAGTGGCTGTTAGTCAAG
CGCAAGGATTTTGCCCGGGTGCGTATGGTTTGTTTTCCGTATGCAGGCGG
GAACTCTAATTTCTACAAGACGTGGGATTTCAAGGAGACGGAGATGGTAT
TGGTGGAGCTGCCGGGGCGTAATGCCCGGTACAATGAAAAGGCCATGACA
GACGTGTACTCAATCGCGAAGAAGATTGCTTCGGCATTGGATGCGGTCGG
GTATTTGAAGTCGAAGATTCCGTTGGTGTTTTTCGGTCACAGCTTTGGTG
CGATCGTGTCGACGTTGGTGGCGCAAGTGTTGCGGAATCAGTATAATTAT
ACACCCAAGCATTTGATTGTCTCGGGTTGTGTACCCTTGCATATGAGGGC
GGGGCGCCCGAAGTTCTCCGTGCCAAACGATAATGATTTAGTGACGTCTC
TGTTAGACATGGGGGGAATCACGAAGGAGATGGCCAAGAACCGAGATGTG
GTCAGTCAGTTCCTCCCCGCGTTGAAGGGAGATTACCTAGCGGTGGATAA
GTATGTGTACCACGAAGCGGAGCCCTTGGCCTGCCCGATTTTAGCCTTGG
GCAGCGACCAAGACATGCGAGTCCCCCAGCAAGAGACGGCCGAATGGGCT
CGCTTCACGGCGGGGGAGTTTGAGTCACGCATTTTCCCGGGCGGACATTT
TTTCCTCAAGCCGTTGGAGAAGGATGTAATTGCGTATATTTCTTCAGTTA
TTTTCAAGGACATGACGGGCCCGGGGGCCATGGCATTGCCGGGATTCATC
CTCTTTGATCCCAATAAGGTTGAGTAA
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Synonyms
Publications