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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:741743..743176 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02570.1 vs.
Match: XP_005830157.1 (hypothetical protein GUITHDRAFT_110904 [Guillardia theta CCMP2712]; EKX43177.1 hypothetical protein GUITHDRAFT_110904 [Guillardia theta CCMP2712]) HSP 1 Score: 155.2 bits (391), Expect = 4.000e-34 Identity = 94/256 (36.72%), Postives = 134/256 (52.34%), Query Frame = 0
Query: 84 IPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDS--LRNKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFSNTGTVELNNGLIGALPQHPILSSLIERIHTQHFSLPPRPPLLPSEPSTLSSSPSTSPLPSKVPSNFAAILGFLGQGEAAAVKQAVEAGVRNVSSMGTIEATGPGLFTRVVAEHLQLLEEQSVHAGTRD-KILLAPPAWFYPMPNH 337
IP+I+HHIW+G P +FQ+ R W+ HP ++GW H+LW D++I S + + +Y +A NYG+KSDILR E+L+R+GG YVDVD +C+RS H G SN G +E+NNGLIG+ PQHP+L L PL PST +PS+ +L L G K G + V+S TGPG FTR++ + E+ G D + ++ P +FY +PN+
Sbjct: 89 IPRIIHHIWIGGKLPGKFQSLRDEWILLHPAQEGWKHYLWDDESIAQEFSSNPMDSAGSYASASNYGEKSDILRLEVLNRFGGVYVDVDFKCIRS--FHD------ILGLSNVGHIEVNNGLIGSAPQHPLLKVL---------------PLWHLVPST------------SMPSD--RLLCALSSGNETICK----TGTKFVNSFKLDRQTGPGYFTRMMISAWK--EKLHKPHGVDDLEWIVLPVRYFYSLPNN 301
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02570.1 ID=NO03G02570.1|Name=NO03G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp CAGCTTGCATACCAAACATGGAGGCCTCAACACCGGTGGCCAGTTTGCTG GGGGACTGCGACCTCCAAGATTATGTCCATTTTTTCCTGGAGGACGACGC GAGGCAGAAGCCTGTCATTGCTGAGGAGCCGTCCTCGCGCCGCTGCCGTG CGTGCTGGCTGGACATCGCAAAAGAAGCAACATTCCTCCATCAAGCCTTG ACCGAGTACAAATACACCCTTCGCATCCTGCAGGGGCCGCCGGCTTCGTC ACCCAATTATGCCTGTATCCCTAAAATCCTTCACCACATTTGGCTGGGCT CTCCCTTCCCCGAACGCTTCCAAGCCTTCCGTAAAACCTGGCTGAAGCAA CACCCAACAGAAGACGGTTGGAGCCACTTCCTTTGGACGGATGATAACAT AATTCCCCTCCTGGACAGCCTGCGGAACAAGTCTGCTTACATTGCGGCGC CCAACTACGGACAAAAATCAGATATTCTGCGGTATGAACTATTGCATCGA TACGGAGGAACTTACGTAGACGTGGACATGGAGTGTGTGCGGTCGTTGGA CCTCCACTCGGAGGCAGGCCCGACCTTCTACGCGGGTTTCTCCAACACGG GCACAGTCGAGCTGAACAACGGGCTCATCGGAGCCCTCCCGCAGCACCCT ATCTTATCCAGCTTGATCGAGCGCATCCACACCCAGCATTTCTCGCTTCC TCCTCGTCCCCCCCTTCTTCCTTCTGAGCCATCCACACTATCATCATCAC CATCAACTTCACCATTACCATCAAAAGTACCCTCCAACTTTGCTGCAATT TTAGGATTTCTCGGCCAGGGAGAAGCGGCAGCGGTAAAGCAAGCCGTGGA AGCGGGAGTAAGGAATGTATCGTCCATGGGCACGATTGAGGCCACAGGAC CAGGTCTCTTCACGCGGGTGGTAGCTGAGCACCTGCAACTGCTGGAGGAG CAGTCAGTGCACGCGGGGACGAGAGATAAGATACTACTGGCCCCACCTGC TTGGTTCTATCCCATGCCAAATCACGTAGCACATGTGTCCGTACCCTCCT CCTCGCCCTCTTCTTCGTCCTCGAATGTTTATGTACTACCAGCCGTGACA TACACTGTCCACCACTGGGCCCGCTCCTGGCAGCAACAAGAGCAGCACTT GCACTACCCGAGTAAATAATCATACACATGCCAGGTTGCAGTTGAAGTAA TGGAGACAAAACAAAGCTAGCCTCTACTTCTCAACTTCTCGCTCATGGGT T back to topprotein sequence of NO03G02570.1 >NO03G02570.1-protein ID=NO03G02570.1-protein|Name=NO03G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp MEASTPVASLLGDCDLQDYVHFFLEDDARQKPVIAEEPSSRRCRACWLDI AKEATFLHQALTEYKYTLRILQGPPASSPNYACIPKILHHIWLGSPFPER FQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQK SDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFSNTGTVELN NGLIGALPQHPILSSLIERIHTQHFSLPPRPPLLPSEPSTLSSSPSTSPL PSKVPSNFAAILGFLGQGEAAAVKQAVEAGVRNVSSMGTIEATGPGLFTR VVAEHLQLLEEQSVHAGTRDKILLAPPAWFYPMPNHVAHVSVPSSSPSSS SSNVYVLPAVTYTVHHWARSWQQQEQHLHYPSK* back to topmRNA from alignment at chr3:741743..743176+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02570.1 ID=NO03G02570.1|Name=NO03G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at chr3:741743..743176+ (Nannochloropsis oceanica) CAGCTTGCATACCAAACATGGAGGCCTCAACACCGGTGGCCAGTTTGCTG
GGGGACTGCGACCTCCAAGATTATGTCCATTTTTTCCTGGAGGACGACGC
GAGGCAGAAGCCTGTCATTGCTGAGGAGCCGTCCTCGCGCCGCTGCCGTG
CGTGCTGGCTGGACATCGCAAAAGAAGCAACATTCCTCCATCAAGCCTTG
ACCGAGTACAAATACACCCTTCGCATCCTGCAGGGGCCGCCGGCTTCGTC
ACCCAATTATGCCTGTATCCCTAAAATCCTTCACCACATTTGGCTGGGCT
CTCCCTTCCCCGAACGCTTCCAAGCCTTCCGTAAAACCTGGCTGAAGCAA
CACCCAACAGAAGACGGTAAATGGCCTATGTATCCCATATCGGGCTTTCT
TTTTACATGTGGCTTACATTCTTTTTTTTTTCGCACTTGAAAAGGTTGGA
GCCACTTCCTTTGGACGGATGATAACATAATTCCCCTCCTGGACAGCCTG
CGGAACAAGTCTGCTTACATTGCGGCGCCCAACTACGGACAAAAATCAGA
TATTCTGCGGTATGAACTATTGCATCGATACGGAGGAACTTACGTAGACG
TGGACATGGAGTGTGTGCGGTCGTTGGACCTCCACTCGGAGGCAGGCCCG
ACCTTCTACGCGGGTTTCTCCAACACGGGCACAGTCGAGCTGAACAACGG
GCTCATCGGGTGGGTGCGTTCATCAAATGACTTTTGAAAAACCAATTGAC
GGATTGGTCCCTTTTTTTCACGAAAAGTTTCGCCCGTCTAACATCTCTTG
TTCTCAATTCACAGAGCCCTCCCGCAGCACCCTATCTTATCCAGCTTGAT
CGAGCGCATCCACACCCAGCATTTCTCGCTTCCTCCTCGTCCCCCCCTTC
TTCCTTCTGAGCCATCCACACTATCATCATCACCATCAACTTCACCATTA
CCATCAAAAGTACCCTCCAACTTTGCTGCAATTTTAGGATTTCTCGGCCA
GGGAGAAGCGGCAGCGGTAAAGCAAGCCGTGGAAGCGGGAGTAAGGAATG
TATCGTCCATGGGCACGATTGAGGCCACAGGACCAGGTCTCTTCACGCGG
GTGGTAGCTGAGCACCTGCAACTGCTGGAGGAGCAGTCAGTGCACGCGGG
GACGAGAGATAAGATACTACTGGCCCCACCTGCTTGGTTCTATCCCATGC
CAAATCACGTAGCACATGTGTCCGTACCCTCCTCCTCGCCCTCTTCTTCG
TCCTCGAATGTTTATGTACTACCAGCCGTGACATACACTGTCCACCACTG
GGCCCGCTCCTGGCAGCAACAAGAGCAGCACTTGCACTACCCGAGTAAAT
AATCATACACATGCCAGGTTGCAGTTGAAGTAATGGAGACAAAACAAAGC
TAGCCTCTACTTCTCAACTTCTCGCTCATGGGTT back to topCoding sequence (CDS) from alignment at chr3:741743..743176+ >NO03G02570.1 ID=NO03G02570.1|Name=NO03G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr3:741743..743176+ (Nannochloropsis oceanica) ATGGAGGCCTCAACACCGGTGGCCAGTTTGCTGGGGGACTGCGACCTCCA AGATTATGTCCATTTTTTCCTGGAGGACGACGCGAGGCAGAAGCCTGTCA TTGCTGAGGAGCCGTCCTCGCGCCGCTGCCGTGCGTGCTGGCTGGACATC GCAAAAGAAGCAACATTCCTCCATCAAGCCTTGACCGAGTACAAATACAC CCTTCGCATCCTGCAGGGGCCGCCGGCTTCGTCACCCAATTATGCCTGTA TCCCTAAAATCCTTCACCACATTTGGCTGGGCTCTCCCTTCCCCGAACGC TTCCAAGCCTTCCGTAAAACCTGGCTGAAGCAACACCCAACAGAAGACGG TTGGAGCCACTTCCTTTGGACGGATGATAACATAATTCCCCTCCTGGACA GCCTGCGGAACAAGTCTGCTTACATTGCGGCGCCCAACTACGGACAAAAA TCAGATATTCTGCGGTATGAACTATTGCATCGATACGGAGGAACTTACGT AGACGTGGACATGGAGTGTGTGCGGTCGTTGGACCTCCACTCGGAGGCAG GCCCGACCTTCTACGCGGGTTTCTCCAACACGGGCACAGTCGAGCTGAAC AACGGGCTCATCGGAGCCCTCCCGCAGCACCCTATCTTATCCAGCTTGAT CGAGCGCATCCACACCCAGCATTTCTCGCTTCCTCCTCGTCCCCCCCTTC TTCCTTCTGAGCCATCCACACTATCATCATCACCATCAACTTCACCATTA CCATCAAAAGTACCCTCCAACTTTGCTGCAATTTTAGGATTTCTCGGCCA GGGAGAAGCGGCAGCGGTAAAGCAAGCCGTGGAAGCGGGAGTAAGGAATG TATCGTCCATGGGCACGATTGAGGCCACAGGACCAGGTCTCTTCACGCGG GTGGTAGCTGAGCACCTGCAACTGCTGGAGGAGCAGTCAGTGCACGCGGG GACGAGAGATAAGATACTACTGGCCCCACCTGCTTGGTTCTATCCCATGC CAAATCACGTAGCACATGTGTCCGTACCCTCCTCCTCGCCCTCTTCTTCG TCCTCGAATGTTTATGTACTACCAGCCGTGACATACACTGTCCACCACTG GGCCCGCTCCTGGCAGCAACAAGAGCAGCACTTGCACTACCCGAGTAAAT AA back to top
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