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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:656740..658404 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02220.1 vs.
Match: EWM29678.1 (aatf protein [Nannochloropsis gaditana]) HSP 1 Score: 121.3 bits (303), Expect = 9.300e-24 Identity = 129/300 (43.00%), Postives = 171/300 (57.00%), Query Frame = 0
Query: 3 AKMKRQLLKDIAALTSFGDG--GGANGEEDVYDDGTSAFGHGKGKEERNGSSAGGVWRVEDDEEREGGLGGVAVSRSRLRMERAMDFGEEEARYRGKKVSRRALLADDNEEDEEEEERREVSDDKEEESEKEDGEKEVEEKEEEEEEEEEEEEEEEEEEEVASESGSGSQEDEDKDEDEVDDSDDDTDSDGRHDEEEELTLEEEMEQLRQDKGGMALLLKRSRDDQRQKAEQARTERDLWNKLLEVRILLQRLLGMANRFPRGEAYEQYIDLDESGETREGFSGVASGLRGVLANLVEMR 301
AK++ QLL+DIAALT+FG+G G +G+ED Y+DGT+A + + NG GG +GG G V GE+ G R L R E + D +E E+ G+K + +E+E+E+E+E+E + + SG + DED E+ D + E+E TLEEEME+LRQ+KGGMALLLKRS D+Q+ KA QAR RD+WNKLLEVRILLQRLLGMANRFPR +AY++Y +D SGETR F V+ GLRG+L L +R
Sbjct: 2 AKVRGQLLRDIAALTTFGEGAEGYRDGDEDNYEDGTNA----RLAQYNNGWINGG----------DGGGDGTWVVE-----------GEDGKSGSGASTGRSRL-------------RMERAMDFVDEDERYRGKKVLRRALVDEDEDEDEDEDE------GNGANSGPEGDEDVSSSEISSQQVSED-----EHEKEPTLEEEMEKLRQNKGGMALLLKRSNDEQQLKAAQARKHRDMWNKLLEVRILLQRLLGMANRFPRDKAYDEYCRMDGSGETRAKFKEVSRGLRGLLETLQLLR 252
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02220.1 ID=NO03G02220.1|Name=NO03G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp ATGGCCGCCAAGATGAAGCGCCAGTTGCTCAAGGATATTGCGGCCTTGAC GAGCTTTGGTGACGGTGGGGGTGCGAATGGCGAGGAGGATGTCTACGACG ACGGGACTAGCGCCTTCGGTCACGGCAAAGGCAAAGAAGAAAGGAACGGC AGCAGCGCCGGTGGTGTTTGGCGCGTCGAAGACGATGAGGAAAGGGAGGG GGGTTTGGGAGGGGTTGCCGTGAGTCGGTCGAGGCTGCGGATGGAGCGGG CGATGGATTTTGGGGAGGAGGAGGCGCGGTACCGGGGGAAGAAGGTCTCG CGACGGGCTCTGCTCGCGGACGATAATGAAGAGGATGAGGAGGAGGAGGA AAGAAGAGAAGTTAGTGATGACAAGGAGGAAGAAAGTGAGAAGGAGGATG GGGAGAAAGAGGTCGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCTCCGAGTCGGGATC TGGCTCTCAAGAAGACGAAGACAAAGACGAGGACGAGGTCGATGACAGCG ACGACGACACCGACAGTGACGGTCGTCATGACGAAGAAGAGGAACTCACG CTTGAGGAGGAGATGGAGCAGCTCCGGCAGGACAAGGGTGGGATGGCTTT ACTACTCAAGCGGTCCCGGGACGATCAACGACAAAAGGCAGAGCAAGCAC GAACGGAACGCGACCTGTGGAACAAGCTCTTGGAAGTCCGCATCTTGTTG CAACGCTTGCTAGGAATGGCGAATCGTTTCCCGCGTGGGGAGGCGTACGA GCAATATATTGATTTGGACGAGAGTGGGGAGACTCGAGAAGGCTTCTCTG GAGTGGCCTCGGGGCTCCGGGGTGTCCTAGCTAACCTAGTAGAGATGCGC GCGGAACACGCGGCAGCGCACCAGCAGGAAGATCCGGCCGAAGCCAGTCA ACGACGAAAACGACAACGGGCGCAGCATGCGACGTTTGTGAGTGGGAAGG TCGGGCTGGGGAGTGGGGGGGATCCATGGATGGCATCACAGGGGGATTAT CAAGTATGTAAGGAGCGGTGGAAGGAGGTGGTGGATGCAGCACACCAACG TGCGACGTTATCTTGGGCAGTGTCGAAGAAGTTCAAGGTGGTCAATTCGG GTCTATGGGGGCAGGTGGAGGTGGCGGCGAAGGGAGCGAGGGCGGTGAAA CGCTCCCATTTGACACTGGCTCAGACGAAGGCCGCCGGGCTGTTTACTGC AGGTGCTGCTGAGAAGGAGGACGCGGGCGAGGGGGCGAAAGAGGGGGAAA TGGAGGAGGGAAATGAGGGAAACGGGGAGGTGGACTTGGAGGCGTTTGAC GATGCGGATCTGTACCAGCAACTGTTGAGGGATTACATACAAACAGTCGG CACCGGGGGCGATGTGGACCCTGCTGCTGTTGCTGCCATGGGGCGATCCT TGTCGAGGAGACGCCATAAAAAGAAGGTCGATACCAAGGCGAGTAAAGGG AGGAAGTTGAGGTATGCAGTGCACCCCAAGTTGGAGCATTTTATGTTCCC AGTGCCCATGGGGGAGTGCGGGATAGATGTGGATAGACTGTTTGCCTCGC TGCCCGGACGGAGGGGGAAGGTGGTGGTGCCCATGGCGGGGAAGGCCGAG GAAGGGATAGACTGA back to topprotein sequence of NO03G02220.1 >NO03G02220.1-protein ID=NO03G02220.1-protein|Name=NO03G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp MAAKMKRQLLKDIAALTSFGDGGGANGEEDVYDDGTSAFGHGKGKEERNG SSAGGVWRVEDDEEREGGLGGVAVSRSRLRMERAMDFGEEEARYRGKKVS RRALLADDNEEDEEEEERREVSDDKEEESEKEDGEKEVEEKEEEEEEEEE EEEEEEEEEEVASESGSGSQEDEDKDEDEVDDSDDDTDSDGRHDEEEELT LEEEMEQLRQDKGGMALLLKRSRDDQRQKAEQARTERDLWNKLLEVRILL QRLLGMANRFPRGEAYEQYIDLDESGETREGFSGVASGLRGVLANLVEMR AEHAAAHQQEDPAEASQRRKRQRAQHATFVSGKVGLGSGGDPWMASQGDY QVCKERWKEVVDAAHQRATLSWAVSKKFKVVNSGLWGQVEVAAKGARAVK RSHLTLAQTKAAGLFTAGAAEKEDAGEGAKEGEMEEGNEGNGEVDLEAFD DADLYQQLLRDYIQTVGTGGDVDPAAVAAMGRSLSRRRHKKKVDTKASKG RKLRYAVHPKLEHFMFPVPMGECGIDVDRLFASLPGRRGKVVVPMAGKAE EGID* back to topmRNA from alignment at chr3:656740..658404+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02220.1 ID=NO03G02220.1|Name=NO03G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp|location=Sequence derived from alignment at chr3:656740..658404+ (Nannochloropsis oceanica) ATGGCCGCCAAGATGAAGCGCCAGTTGCTCAAGGATATTGCGGCCTTGAC
GAGCTTTGGTGACGGTGGGGGTGCGAATGGCGAGGAGGATGTCTACGACG
ACGGGACTAGCGCCTTCGGTCACGGCAAAGGCAAAGAAGAAAGGAACGGC
AGCAGCGCCGGTGGTGTTTGGCGCGTCGAAGACGATGAGGAAAGGGAGGG
GGGTTTGGGAGGGGTTGCCGTGAGTCGGTCGAGGCTGCGGATGGAGCGGG
CGATGGATTTTGGGGAGGAGGAGGCGCGGTACCGGGGGAAGAAGGTCTCG
CGACGGGCTCTGCTCGCGGACGATAATGAAGAGGATGAGGAGGAGGAGGA
AAGAAGAGAAGTTAGTGATGACAAGGAGGAAGAAAGTGAGAAGGAGGATG
GGGAGAAAGAGGTCGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCTCCGAGTCGGGATC
TGGCTCTCAAGAAGACGAAGACAAAGACGAGGACGAGGTCGATGACAGCG
ACGACGACACCGACAGTGACGGTCGTCATGACGAAGAAGAGGAACTCACG
CTTGAGGAGGAGATGGAGCAGCTCCGGCAGGACAAGGGTGGGATGGCTTT
ACTACTCAAGCGGTCCCGGGACGATCAACGACAAAAGGCAGAGCAAGCAC
GAACGGAACGCGACCTGTGGAACAAGCTCTTGGAAGTCCGCATCTTGTTG
CAACGCTTGCTAGGAATGGCGAATCGTTTCCCGCGTGGGGAGGCGTACGA
GCAATATATTGATTTGGACGAGAGTGGGGAGACTCGAGAAGGCTTCTCTG
GAGTGGCCTCGGGGCTCCGGGGTGTCCTAGCTAACCTAGTAGAGATGCGC
GCGGAACACGCGGCAGCGCACCAGCAGGAAGATCCGGCCGAAGCCAGTCA
ACGACGAAAACGACAACGGGCGCAGCATGCGACGTTTGTGAGTGGGAAGG
TCGGGCTGGGGAGTGGGGGGGATCCATGGATGGCATCACAGGGGGATTAT
CAAGTATGTAAGGAGCGGTGGAAGGAGGTGGTGGATGCAGCACACCAACG
TGCGACGTTATCTTGGGCAGTGTCGAAGAAGTTCAAGGTGGTCAATTCGG
GTCTATGGGGGCAGGTGGAGGTGGCGGCGAAGGGAGCGAGGGCGGTGAAA
CGCTCCCATTTGACACTGGCTCAGACGAAGGCCGCCGGGCTGTTTACTGC
AGGTGCTGCTGAGAAGGAGGACGCGGGCGAGGGGGCGAAAGAGGGGGAAA
TGGAGGAGGGAAATGAGGGAAACGGGGAGGTGGACTTGGAGGCGTTTGAC
GATGCGGATCTGTACCAGCAACTGTTGAGGGATTACATACAAACAGTCGG
CACCGGGGGCGATGTGGACCCTGCTGCTGTTGCTGCCATGGGGCGATCCT
TGTCGAGGAGACGCCATAAAAAGAAGGTCGATACCAAGGCGAGTAAAGGG
AGGAAGTTGAGGTATGCAGTGCACCCCAAGTTGGAGCATTTTATGTTCCC
AGTGCCCATGGGGGAGTGCGGGATAGATGTGGATAGACTGTTTGCCTCGC
TGCCCGGACGGAGGGGGAAGGTGGTGGTGCCCATGGCGGGGAAGGCCGAG
GAAGGGATAGACTGA back to topCoding sequence (CDS) from alignment at chr3:656740..658404+ >NO03G02220.1 ID=NO03G02220.1|Name=NO03G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at chr3:656740..658404+ (Nannochloropsis oceanica) ATGGCCGCCAAGATGAAGCGCCAGTTGCTCAAGGATATTGCGGCCTTGAC GAGCTTTGGTGACGGTGGGGGTGCGAATGGCGAGGAGGATGTCTACGACG ACGGGACTAGCGCCTTCGGTCACGGCAAAGGCAAAGAAGAAAGGAACGGC AGCAGCGCCGGTGGTGTTTGGCGCGTCGAAGACGATGAGGAAAGGGAGGG GGGTTTGGGAGGGGTTGCCGTGAGTCGGTCGAGGCTGCGGATGGAGCGGG CGATGGATTTTGGGGAGGAGGAGGCGCGGTACCGGGGGAAGAAGGTCTCG CGACGGGCTCTGCTCGCGGACGATAATGAAGAGGATGAGGAGGAGGAGGA AAGAAGAGAAGTTAGTGATGACAAGGAGGAAGAAAGTGAGAAGGAGGATG GGGAGAAAGAGGTCGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCTCCGAGTCGGGATC TGGCTCTCAAGAAGACGAAGACAAAGACGAGGACGAGGTCGATGACAGCG ACGACGACACCGACAGTGACGGTCGTCATGACGAAGAAGAGGAACTCACG CTTGAGGAGGAGATGGAGCAGCTCCGGCAGGACAAGGGTGGGATGGCTTT ACTACTCAAGCGGTCCCGGGACGATCAACGACAAAAGGCAGAGCAAGCAC GAACGGAACGCGACCTGTGGAACAAGCTCTTGGAAGTCCGCATCTTGTTG CAACGCTTGCTAGGAATGGCGAATCGTTTCCCGCGTGGGGAGGCGTACGA GCAATATATTGATTTGGACGAGAGTGGGGAGACTCGAGAAGGCTTCTCTG GAGTGGCCTCGGGGCTCCGGGGTGTCCTAGCTAACCTAGTAGAGATGCGC GCGGAACACGCGGCAGCGCACCAGCAGGAAGATCCGGCCGAAGCCAGTCA ACGACGAAAACGACAACGGGCGCAGCATGCGACGTTTGTGAGTGGGAAGG TCGGGCTGGGGAGTGGGGGGGATCCATGGATGGCATCACAGGGGGATTAT CAAGTATGTAAGGAGCGGTGGAAGGAGGTGGTGGATGCAGCACACCAACG TGCGACGTTATCTTGGGCAGTGTCGAAGAAGTTCAAGGTGGTCAATTCGG GTCTATGGGGGCAGGTGGAGGTGGCGGCGAAGGGAGCGAGGGCGGTGAAA CGCTCCCATTTGACACTGGCTCAGACGAAGGCCGCCGGGCTGTTTACTGC AGGTGCTGCTGAGAAGGAGGACGCGGGCGAGGGGGCGAAAGAGGGGGAAA TGGAGGAGGGAAATGAGGGAAACGGGGAGGTGGACTTGGAGGCGTTTGAC GATGCGGATCTGTACCAGCAACTGTTGAGGGATTACATACAAACAGTCGG CACCGGGGGCGATGTGGACCCTGCTGCTGTTGCTGCCATGGGGCGATCCT TGTCGAGGAGACGCCATAAAAAGAAGGTCGATACCAAGGCGAGTAAAGGG AGGAAGTTGAGGTATGCAGTGCACCCCAAGTTGGAGCATTTTATGTTCCC AGTGCCCATGGGGGAGTGCGGGATAGATGTGGATAGACTGTTTGCCTCGC TGCCCGGACGGAGGGGGAAGGTGGTGGTGCCCATGGCGGGGAAGGCCGAG GAAGGGATAGACTGA back to top
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