NO03G02200.1, NO03G02200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02200.1
Unique NameNO03G02200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr3:651089..652003 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:651089..652003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02200.1 vs.
Match: EWM29677.1 (hypothetical protein Naga_100299g3 [Nannochloropsis gaditana])

HSP 1 Score: 247.3 bits (630), Expect = 6.200e-62
Identity = 138/267 (51.69%), Postives = 166/267 (62.17%), Query Frame = 0 
Query:    1 MTTSIRFSSRR--SWPPASLSSASPFLKLLVLIVLLKLCQQSRGPTNTGYG--VFLVAATVIPANTGRRPSHPEASVVSACGGRLSPAQGSPR----VVAWGEGWELDEDIWERLGTRILDFVLRRKEPEEPHPLRMQRWTISMRRLPFFRRVIRHMQFYPDGRCEVEEEIGGRPLLFKHQHQATAKAKAAVTAGGKGGGNGQRRKRRK----KGGRGAAGPPLMQGKWKYDKYGLNWELEEKGLKHFFHAELIWHSFGDRPKMHCG 256
            MT ++  S +R  S  P   +   P L LL ++V +     S    +  +      VAA +     GRR           C GR +P    P     V+AWG GWE D+D+WERLGTRIL+FVLRRKEPEEPHPLRMQRWTISMRR PFFR V+RHMQFY DGRCEVEEE+   PL  K + +A   A  +    GKG     R+ R++    K  + A  PP +QGKWKYDKYGLNWELEE GL++F+HAELIWHSFGDRPKMHCG
Sbjct:    1 MTRALCGSHQRCASRGPVGGAVTCPLLLLLKILVFVMYISPSPRSVHASHHQPAMNVAAVIGAPFIGRRSGE-------TCPGRRAPGTVCPPSSRLVLAWGGGWEFDDDVWERLGTRILNFVLRRKEPEEPHPLRMQRWTISMRRFPFFRLVVRHMQFYVDGRCEVEEEVHSPPLFPKRRKKAGQSALPSAIRAGKGESAQSRKLRKRRPHVKKAKIAEEPPTLQGKWKYDKYGLNWELEEGGLRYFYHAELIWHSFGDRPKMHCG 260
The following BLAST results are available for this feature:
BLAST of NO03G02200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29677.16.200e-6251.69hypothetical protein Naga_100299g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02200NO03G02200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02200.1NO03G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02200.1.cds1NO03G02200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02200.1 ID=NO03G02200.1|Name=NO03G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGACGACCTCAATACGATTTAGCAGTAGGAGAAGCTGGCCTCCCGCCTC
TCTCTCGTCCGCCTCCCCCTTTCTCAAGCTCCTGGTCCTGATAGTCCTGC
TAAAGCTCTGCCAACAATCACGAGGCCCCACGAACACAGGATATGGCGTT
TTCCTTGTCGCCGCGACCGTCATACCTGCGAATACGGGTCGCCGTCCCTC
CCATCCCGAAGCCTCTGTCGTGTCCGCGTGTGGTGGTCGTCTTAGTCCAG
CCCAAGGCTCCCCCAGAGTAGTGGCATGGGGAGAAGGATGGGAGCTGGAC
GAGGACATCTGGGAGCGATTAGGCACGCGAATCCTTGACTTTGTCTTGCG
GCGGAAGGAGCCGGAGGAGCCCCACCCCTTGAGGATGCAACGATGGACGA
TCTCTATGCGTCGTTTGCCCTTTTTCCGTCGGGTCATCCGACACATGCAA
TTTTACCCCGATGGCCGCTGCGAGGTAGAGGAAGAGATTGGCGGACGGCC
ATTGCTGTTCAAGCACCAGCATCAAGCAACAGCTAAAGCGAAGGCAGCAG
TAACAGCAGGAGGGAAAGGAGGAGGGAACGGACAACGACGGAAACGAAGA
AAGAAGGGAGGGAGGGGGGCAGCCGGACCGCCACTCATGCAAGGGAAGTG
GAAATATGACAAGTACGGTTTAAACTGGGAGTTGGAAGAGAAGGGATTAA
AGCACTTTTTCCACGCCGAATTGATTTGGCATTCTTTCGGGGATCGGCCC
AAGATGCACTGTGGGGTGATCGTGAGGAACCGGGGCCCGCGCTCCCTGTT
GCCGCCTTGGTTGTTCCGGCCGGTTGTGGGTGTCTTTTCCGGGTTAGGCA
ATGGCACAGATACGTGCCTGGTGCCTGAAGCACAGAGTAACGAGAATCGG
TTTCGGAATTACTAG
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protein sequence of NO03G02200.1

>NO03G02200.1-protein ID=NO03G02200.1-protein|Name=NO03G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MTTSIRFSSRRSWPPASLSSASPFLKLLVLIVLLKLCQQSRGPTNTGYGV
FLVAATVIPANTGRRPSHPEASVVSACGGRLSPAQGSPRVVAWGEGWELD
EDIWERLGTRILDFVLRRKEPEEPHPLRMQRWTISMRRLPFFRRVIRHMQ
FYPDGRCEVEEEIGGRPLLFKHQHQATAKAKAAVTAGGKGGGNGQRRKRR
KKGGRGAAGPPLMQGKWKYDKYGLNWELEEKGLKHFFHAELIWHSFGDRP
KMHCGVIVRNRGPRSLLPPWLFRPVVGVFSGLGNGTDTCLVPEAQSNENR
FRNY*
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mRNA from alignment at chr3:651089..652003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02200.1 ID=NO03G02200.1|Name=NO03G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp|location=Sequence derived from alignment at chr3:651089..652003- (Nannochloropsis oceanica)
ATGACGACCTCAATACGATTTAGCAGTAGGAGAAGCTGGCCTCCCGCCTC
TCTCTCGTCCGCCTCCCCCTTTCTCAAGCTCCTGGTCCTGATAGTCCTGC
TAAAGCTCTGCCAACAATCACGAGGCCCCACGAACACAGGATATGGCGTT
TTCCTTGTCGCCGCGACCGTCATACCTGCGAATACGGGTCGCCGTCCCTC
CCATCCCGAAGCCTCTGTCGTGTCCGCGTGTGGTGGTCGTCTTAGTCCAG
CCCAAGGCTCCCCCAGAGTAGTGGCATGGGGAGAAGGATGGGAGCTGGAC
GAGGACATCTGGGAGCGATTAGGCACGCGAATCCTTGACTTTGTCTTGCG
GCGGAAGGAGCCGGAGGAGCCCCACCCCTTGAGGATGCAACGATGGACGA
TCTCTATGCGTCGTTTGCCCTTTTTCCGTCGGGTCATCCGACACATGCAA
TTTTACCCCGATGGCCGCTGCGAGGTAGAGGAAGAGATTGGCGGACGGCC
ATTGCTGTTCAAGCACCAGCATCAAGCAACAGCTAAAGCGAAGGCAGCAG
TAACAGCAGGAGGGAAAGGAGGAGGGAACGGACAACGACGGAAACGAAGA
AAGAAGGGAGGGAGGGGGGCAGCCGGACCGCCACTCATGCAAGGGAAGTG
GAAATATGACAAGTACGGTTTAAACTGGGAGTTGGAAGAGAAGGGATTAA
AGCACTTTTTCCACGCCGAATTGATTTGGCATTCTTTCGGGGATCGGCCC
AAGATGCACTGTGGGGTGATCGTGAGGAACCGGGGCCCGCGCTCCCTGTT
GCCGCCTTGGTTGTTCCGGCCGGTTGTGGGTGTCTTTTCCGGGTTAGGCA
ATGGCACAGATACGTGCCTGGTGCCTGAAGCACAGAGTAACGAGAATCGG
TTTCGGAATTACTAG
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Coding sequence (CDS) from alignment at chr3:651089..652003-

>NO03G02200.1 ID=NO03G02200.1|Name=NO03G02200.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr3:651089..652003- (Nannochloropsis oceanica)
ATGACGACCTCAATACGATTTAGCAGTAGGAGAAGCTGGCCTCCCGCCTC
TCTCTCGTCCGCCTCCCCCTTTCTCAAGCTCCTGGTCCTGATAGTCCTGC
TAAAGCTCTGCCAACAATCACGAGGCCCCACGAACACAGGATATGGCGTT
TTCCTTGTCGCCGCGACCGTCATACCTGCGAATACGGGTCGCCGTCCCTC
CCATCCCGAAGCCTCTGTCGTGTCCGCGTGTGGTGGTCGTCTTAGTCCAG
CCCAAGGCTCCCCCAGAGTAGTGGCATGGGGAGAAGGATGGGAGCTGGAC
GAGGACATCTGGGAGCGATTAGGCACGCGAATCCTTGACTTTGTCTTGCG
GCGGAAGGAGCCGGAGGAGCCCCACCCCTTGAGGATGCAACGATGGACGA
TCTCTATGCGTCGTTTGCCCTTTTTCCGTCGGGTCATCCGACACATGCAA
TTTTACCCCGATGGCCGCTGCGAGGTAGAGGAAGAGATTGGCGGACGGCC
ATTGCTGTTCAAGCACCAGCATCAAGCAACAGCTAAAGCGAAGGCAGCAG
TAACAGCAGGAGGGAAAGGAGGAGGGAACGGACAACGACGGAAACGAAGA
AAGAAGGGAGGGAGGGGGGCAGCCGGACCGCCACTCATGCAAGGGAAGTG
GAAATATGACAAGTACGGTTTAAACTGGGAGTTGGAAGAGAAGGGATTAA
AGCACTTTTTCCACGCCGAATTGATTTGGCATTCTTTCGGGGATCGGCCC
AAGATGCACTGTGGGGTGATCGTGAGGAACCGGGGCCCGCGCTCCCTGTT
GCCGCCTTGGTTGTTCCGGCCGGTTGTGGGTGTCTTTTCCGGGTTAGGCA
ATGGCACAGATACGTGCCTGGTGCCTGAAGCACAGAGTAACGAGAATCGG
TTTCGGAATTACTAG
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Synonyms
Publications