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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:619459..622073 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02070.1 vs.
Match: EWM29643.1 (mbr-related protein [Nannochloropsis gaditana]) HSP 1 Score: 477.6 bits (1228), Expect = 4.600e-131 Identity = 267/432 (61.81%), Postives = 320/432 (74.07%), Query Frame = 0
Query: 105 EEEDDLVGTARLSYGSDGQKGLRMDVDLDVSELTSHLGPAAKPLVAVAKAIQQTIFYTAPMLALAGLITQIAGISCSRYTKTQADKKDGE----------KKGSIN---------YKGNRSTTADWKQQQKQQD------AKAAVVAKTNKKGASPLSSLWAFLKWPFPYSLFLSSSSSSTLSSSRSKDKDNSKQAAHVCNVKGGAV--------SMR-----ETLDWNAFGILTTRAAGQWSSLVIAGIVLGKLLNHAAASTKFDPTLLLSLDIFTAFAAIFLSENVGFLRTKMDMSWYQRVLRKPTWTPKPIVFPLVWIPLKLLQTAALTVVWRLVERNALAVPVLLFLLHLTLGDLWNVVFFGEKRIGYGLSVMYAFYASLAASCYSFYSVRPRAAYLLVPTAVWVFVATSLNYSIWLMNGQPTRFPTK 499
EE++DLVG AR+SYGSDGQKGLRMDVDLDV+ELTSHLGPAAKPLVAVA+AIQ TIFYTAP+LALAGL+TQIAGI+CSRYTKTQADKK + KK ++ + +R + ++Q K+QD AK ++AK K AS +S+W +LK F S++S +SKD + A V KGGA+ S R E LDWNAF +L+ RAA QW+ LV +G+ + A AS K +P LL+SLD+FTA +A+FLSE VGFLRT+MDM WY RVL+KPTWTP+PIVFPLVW+PLKLLQTAAL +VWRL++R+AL VPV+LFLLHLTLGDLWN+VFFGEKRIG+GLSVMYAFYASLAASCY+FYSV PRAAYL+VPTAVWVF+ATSLNYSIWL+NG PTRFPTK
Sbjct: 2 EEDEDLVGAARVSYGSDGQKGLRMDVDLDVNELTSHLGPAAKPLVAVARAIQSTIFYTAPVLALAGLLTQIAGITCSRYTKTQADKKSNKQGKASRTRDPKKSTVKEEQVRRDAKQRQDRLEKEEKRRQSKEQDQRQRREAKGKMLAKAKKPHASS-TSIWGYLKRAF-----------SSISPGKSKDN----KLAFVTRTKGGALLGWNTGGPSTRKSKDGEILDWNAFTVLSLRAACQWALLVAVAAAVGRGVEAAGASRKLNPRLLISLDVFTASSAVFLSEKVGFLRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTPTRFPTK 417
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02070.1 ID=NO03G02070.1|Name=NO03G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp AGGCACAGTTTGATCATTGTCGGCCATCCTCAGCGGAACCATGGGCAGCG GCAGGGCGGTCGGTCTGCTTATGTCGGCCGGGATAATGCTAGCGGAAGGG GGCAGCAGAAGTACCAATCTTCCACCTCTACCGGCCGCCTCGTACCCACC TCCTTCTGCTTCCTGGGCCGCCTCCAGCATGGATCCCACATCCCTGCCAC GCCTCTTGACACGGCGGGGTGGCATAAAGATACGGGCAGAGCCTGTGATC GAGGGGGAGTCCTCGAGATCACGGATACCAAGCGGCAGCAACGAGCGGGA CAAGAAAGGAGGGGGCAAGAACAGCAAAAGAGACACACCCGACAGACGCG GAGAGGAGGAAGACGATCTCGTCGGAACCGCACGCTTGAGCTATGGGAGC GATGGCCAAAAAGGTTTGCGGATGGACGTTGATCTGGATGTGAGTGAGTT GACCAGTCACCTAGGACCTGCAGCAAAGCCCTTGGTAGCGGTGGCTAAGG CGATACAGCAAACAATTTTTTACACCGCGCCTATGTTAGCTCTCGCCGGG TTGATCACTCAAATTGCGGGAATTTCCTGCTCGCGATACACTAAGACGCA GGCGGACAAAAAGGACGGAGAGAAGAAGGGCAGCATCAATTACAAAGGGA ACCGCAGTACCACTGCTGACTGGAAGCAGCAACAAAAGCAGCAAGACGCC AAGGCCGCGGTTGTCGCGAAGACAAATAAGAAAGGTGCCTCCCCTCTCTC CTCACTATGGGCATTCCTCAAGTGGCCGTTCCCCTATTCGCTCTTCCTCT CCTCTTCCTCCTCCTCAACCTTGTCCTCCTCCAGAAGCAAAGACAAGGAC AACAGTAAACAAGCAGCTCACGTCTGCAACGTCAAAGGCGGTGCTGTTTC AATGCGAGAAACCCTCGACTGGAATGCCTTTGGTATTCTCACCACCCGGG CCGCCGGTCAATGGTCCAGTCTCGTCATTGCAGGCATCGTTCTCGGCAAG CTCCTCAACCACGCCGCCGCCTCGACGAAATTCGATCCCACCCTCCTCCT ATCCCTCGATATCTTTACAGCATTCGCCGCCATTTTTCTGAGTGAAAATG TGGGGTTCTTGCGGACCAAGATGGATATGAGTTGGTACCAGCGGGTGTTA CGGAAACCGACTTGGACCCCCAAACCTATCGTCTTCCCCCTGGTCTGGAT ACCGCTGAAACTGCTGCAAACGGCTGCGTTAACGGTAGTCTGGCGGTTAG TAGAGAGAAACGCCTTGGCGGTGCCAGTACTACTTTTTCTTCTGCACTTG ACACTGGGAGATCTTTGGAACGTGGTTTTCTTTGGAGAGAAGAGGATAGG ATACGGTCTGAGTGTAATGTATGCATTTTACGCCTCCTTGGCCGCGTCGT GTTATTCATTTTATAGCGTCAGGCCACGGGCGGCTTATTTGCTTGTGCCG ACGGCGGTGTGGGTCTTTGTTGCGACGAGTTTGAATTATTCGATCTGGTT GATGAATGGGCAGCCAACGCGGTTTCCGACAAAGATGCAGCAGTAGCTGT AGTCTGAGCAGCAACAGCAGCATAAGCAGCTGCCGCTTTAGCAGCGGTAG GACGAGGAAAGGAGATCACGTTTGAAGAGGAGATGAGGAGAGACCTCTAT ATCTAGATAGAGAAGGGGGATTTTGGGGGAAGGCATATGTCGTGGAGAAA ACGACACAGAGGAACAGCGAGGAACAGTGAGGATGTGTGAGTATGAGTGA GCGGGTGTGGCAGCCGCACCAACAGTGGCACCAATGCCTGCTGCAGTATC ATCGCCGCCAGCAGCCGCATCGTCACGACACACACACTCGTCGGCCATTT TGCAGTCAAACAGAAACGAAAGCAAGCACACCAAATTGTTCATTACATAA AGCTCTGACCGCCCCGATTCCCAAAATAACATGAGACGGAAAGGGAGATC GGCGAAAGAAAGAGTGAAGTCAAAAGGCAGAAGATCAAGATCAAGAAGCA ACGGCAAGCCCAAATCAGCAGCAGCAGCGGGCAGCAGCAGCAGCAGACGT AATATAATCGCGGCTTGACTTGCAAACAAATATGACGACTACGATACACC ACCCCCACCTTCTTTTCTCACTCTCTACAAACATTGGACACATTGATTCG CTCTTGAGAGACGTTATGCATAGACTAGCAGCTAGATGACGGTATTATTA CGAATTCGTGTGCGTGCATATGTAATGATGTGCTTTTTAATGGCATTGGG GCATTGGAGAGGGAAGAGAGAGAATGGAGAGACGAAGGGTCTAGATACAG AGAGGAAACAAGACGTGAATGACAGACGGAGCGAGACACAGAGAGAACGA TTTGCAATGCAACGGTAGGAAAAGATCGAGTGACAGCGACAGGTAGGGGA AATGCACTCACGCAAGGAAGCAATTAAAAAAGAAGGAACGAAAAAAATGA AATTTCCCCTC back to topprotein sequence of NO03G02070.1 >NO03G02070.1-protein ID=NO03G02070.1-protein|Name=NO03G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp MGSGRAVGLLMSAGIMLAEGGSRSTNLPPLPAASYPPPSASWAASSMDPT SLPRLLTRRGGIKIRAEPVIEGESSRSRIPSGSNERDKKGGGKNSKRDTP DRRGEEEDDLVGTARLSYGSDGQKGLRMDVDLDVSELTSHLGPAAKPLVA VAKAIQQTIFYTAPMLALAGLITQIAGISCSRYTKTQADKKDGEKKGSIN YKGNRSTTADWKQQQKQQDAKAAVVAKTNKKGASPLSSLWAFLKWPFPYS LFLSSSSSSTLSSSRSKDKDNSKQAAHVCNVKGGAVSMRETLDWNAFGIL TTRAAGQWSSLVIAGIVLGKLLNHAAASTKFDPTLLLSLDIFTAFAAIFL SENVGFLRTKMDMSWYQRVLRKPTWTPKPIVFPLVWIPLKLLQTAALTVV WRLVERNALAVPVLLFLLHLTLGDLWNVVFFGEKRIGYGLSVMYAFYASL AASCYSFYSVRPRAAYLLVPTAVWVFVATSLNYSIWLMNGQPTRFPTKMQ Q* back to topmRNA from alignment at chr3:619459..622073+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02070.1 ID=NO03G02070.1|Name=NO03G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2615bp|location=Sequence derived from alignment at chr3:619459..622073+ (Nannochloropsis oceanica) AGGCACAGTTTGATCATTGTCGGCCATCCTCAGCGGAACCATGGGCAGCG
GCAGGGCGGTCGGTCTGCTTATGTCGGCCGGGATAATGCTAGCGGAAGGG
GGCAGCAGAAGTACCAATCTTCCACCTCTACCGGCCGCCTCGTACCCACC
TCCTTCTGCTTCCTGGGCCGCCTCCAGCATGGATCCCACATCCCTGCCAC
GCCTCTTGACACGGCGGGGTGGCATAAAGATACGGGCAGAGCCTGTGATC
GAGGGGGAGTCCTCGAGATCACGGGTATGTTTCGGGAAAGGGAGAACGGA
AGGGAAGGAGAACCCCCTCTGGGGAATTGCCTTATTCGCAACCCACGGCG
CTTTTCGGGAAGCGGGCATACACGTGGATGGTCAACAATTTGCTCATCAA
ATCGTCTCTAAATTCTACCACAATATAGATACCAAGCGGCAGCAACGAGC
GGGACAAGAAAGGAGGGGGCAAGAACAGCAAAAGAGACACACCCGACAGA
CGCGGAGAGGAGGAAGACGATCTCGTCGGAACCGCACGCTTGAGCTATGG
GAGCGATGGCCAAAAAGGTTTGCGGATGGACGTTGATCTGGATGTGAGTG
AGTTGACCAGTCACCTAGGACCTGCAGCAAAGCCCTTGGTAGCGGTGGCT
AAGGCGATACAGCAAACAATTTTTTACACCGCGCCTATGTTAGCTCTCGC
CGGGTTGATCACTCAAATTGCGGGAATTTCCTGCTCGCGATACACTAAGA
CGCAGGCGGACAAAAAGGACGGAGAGAAGAAGGGCAGCATCAATTACAAA
GGGAACCGCAGTACCACTGCTGACTGGAAGCAGCAACAAAAGCAGCAAGA
CGCCAAGGCCGCGGTTGTCGCGAAGACAAATAAGAAAGGTGCCTCCCCTC
TCTCCTCACTATGGGCATTCCTCAAGTGGCCGTTCCCCTATTCGCTCTTC
CTCTCCTCTTCCTCCTCCTCAACCTTGTCCTCCTCCAGAAGCAAAGACAA
GGACAACAGTAAACAAGCAGCTCACGTCTGCAACGTCAAAGGCGGTGCTG
TTTCAATGCGAGAAACCCTCGACTGGAATGCCTTTGGTATTCTCACCACC
CGGGCCGCCGGTCAATGGTCCAGTCTCGTCATTGCAGGCATCGTTCTCGG
CAAGCTCCTCAACCACGCCGCCGCCTCGACGAAATTCGATCCCACCCTCC
TCCTATCCCTCGATATCTTTACAGCATTCGCCGCCATTTTTCTGAGTGAA
AATGTGGGGTTCTTGCGGACCAAGATGGATATGAGTTGGTACCAGCGGGT
GTTACGGAAACCGACTTGGACCCCCAAACCTATCGTCTTCCCCCTGGTCT
GGATACCGCTGAAACTGCTGCAAACGGCTGCGTTAACGGTAGTCTGGCGG
TTAGTAGAGAGAAACGCCTTGGCGGTGCCAGTACTACTTTTTCTTCTGCA
CTTGACACTGGGAGATCTTTGGAACGTGGTTTTCTTTGGAGAGAAGAGGA
TAGGATACGGTCTGAGTGTAATGTATGCATTTTACGCCTCCTTGGCCGCG
TCGTGTTATTCATTTTATAGCGTCAGGCCACGGGCGGCTTATTTGCTTGT
GCCGACGGCGGTGTGGGTCTTTGTTGCGACGAGTTTGAATTATTCGATCT
GGTTGATGAATGGGCAGCCAACGCGGTTTCCGACAAAGATGCAGCAGTAG
CTGTAGTCTGAGCAGCAACAGCAGCATAAGCAGCTGCCGCTTTAGCAGCG
GTAGGACGAGGAAAGGAGATCACGTTTGAAGAGGAGATGAGGAGAGACCT
CTATATCTAGATAGAGAAGGGGGATTTTGGGGGAAGGCATATGTCGTGGA
GAAAACGACACAGAGGAACAGCGAGGAACAGTGAGGATGTGTGAGTATGA
GTGAGCGGGTGTGGCAGCCGCACCAACAGTGGCACCAATGCCTGCTGCAG
TATCATCGCCGCCAGCAGCCGCATCGTCACGACACACACACTCGTCGGCC
ATTTTGCAGTCAAACAGAAACGAAAGCAAGCACACCAAATTGTTCATTAC
ATAAAGCTCTGACCGCCCCGATTCCCAAAATAACATGAGACGGAAAGGGA
GATCGGCGAAAGAAAGAGTGAAGTCAAAAGGCAGAAGATCAAGATCAAGA
AGCAACGGCAAGCCCAAATCAGCAGCAGCAGCGGGCAGCAGCAGCAGCAG
ACGTAATATAATCGCGGCTTGACTTGCAAACAAATATGACGACTACGATA
CACCACCCCCACCTTCTTTTCTCACTCTCTACAAACATTGGACACATTGA
TTCGCTCTTGAGAGACGTTATGCATAGACTAGCAGCTAGATGACGGTATT
ATTACGAATTCGTGTGCGTGCATATGTAATGATGTGCTTTTTAATGGCAT
TGGGGCATTGGAGAGGGAAGAGAGAGAATGGAGAGACGAAGGGTCTAGAT
ACAGAGAGGAAACAAGACGTGAATGACAGACGGAGCGAGACACAGAGAGA
ACGATTTGCAATGCAACGGTAGGAAAAGATCGAGTGACAGCGACAGGTAG
GGGAAATGCACTCACGCAAGGAAGCAATTAAAAAAGAAGGAACGAAAAAA
ATGAAATTTCCCCTC back to topCoding sequence (CDS) from alignment at chr3:619459..622073+ >NO03G02070.1 ID=NO03G02070.1|Name=NO03G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at chr3:619459..622073+ (Nannochloropsis oceanica) ATGGGCAGCGGCAGGGCGGTCGGTCTGCTTATGTCGGCCGGGATAATGCT AGCGGAAGGGGGCAGCAGAAGTACCAATCTTCCACCTCTACCGGCCGCCT CGTACCCACCTCCTTCTGCTTCCTGGGCCGCCTCCAGCATGGATCCCACA TCCCTGCCACGCCTCTTGACACGGCGGGGTGGCATAAAGATACGGGCAGA GCCTGTGATCGAGGGGGAGTCCTCGAGATCACGGATACCAAGCGGCAGCA ACGAGCGGGACAAGAAAGGAGGGGGCAAGAACAGCAAAAGAGACACACCC GACAGACGCGGAGAGGAGGAAGACGATCTCGTCGGAACCGCACGCTTGAG CTATGGGAGCGATGGCCAAAAAGGTTTGCGGATGGACGTTGATCTGGATG TGAGTGAGTTGACCAGTCACCTAGGACCTGCAGCAAAGCCCTTGGTAGCG GTGGCTAAGGCGATACAGCAAACAATTTTTTACACCGCGCCTATGTTAGC TCTCGCCGGGTTGATCACTCAAATTGCGGGAATTTCCTGCTCGCGATACA CTAAGACGCAGGCGGACAAAAAGGACGGAGAGAAGAAGGGCAGCATCAAT TACAAAGGGAACCGCAGTACCACTGCTGACTGGAAGCAGCAACAAAAGCA GCAAGACGCCAAGGCCGCGGTTGTCGCGAAGACAAATAAGAAAGGTGCCT CCCCTCTCTCCTCACTATGGGCATTCCTCAAGTGGCCGTTCCCCTATTCG CTCTTCCTCTCCTCTTCCTCCTCCTCAACCTTGTCCTCCTCCAGAAGCAA AGACAAGGACAACAGTAAACAAGCAGCTCACGTCTGCAACGTCAAAGGCG GTGCTGTTTCAATGCGAGAAACCCTCGACTGGAATGCCTTTGGTATTCTC ACCACCCGGGCCGCCGGTCAATGGTCCAGTCTCGTCATTGCAGGCATCGT TCTCGGCAAGCTCCTCAACCACGCCGCCGCCTCGACGAAATTCGATCCCA CCCTCCTCCTATCCCTCGATATCTTTACAGCATTCGCCGCCATTTTTCTG AGTGAAAATGTGGGGTTCTTGCGGACCAAGATGGATATGAGTTGGTACCA GCGGGTGTTACGGAAACCGACTTGGACCCCCAAACCTATCGTCTTCCCCC TGGTCTGGATACCGCTGAAACTGCTGCAAACGGCTGCGTTAACGGTAGTC TGGCGGTTAGTAGAGAGAAACGCCTTGGCGGTGCCAGTACTACTTTTTCT TCTGCACTTGACACTGGGAGATCTTTGGAACGTGGTTTTCTTTGGAGAGA AGAGGATAGGATACGGTCTGAGTGTAATGTATGCATTTTACGCCTCCTTG GCCGCGTCGTGTTATTCATTTTATAGCGTCAGGCCACGGGCGGCTTATTT GCTTGTGCCGACGGCGGTGTGGGTCTTTGTTGCGACGAGTTTGAATTATT CGATCTGGTTGATGAATGGGCAGCCAACGCGGTTTCCGACAAAGATGCAG CAGTAG back to top
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