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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:611159..614069 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02020.2 vs.
Match: EWM29627.1 (HAD-like domain protein [Nannochloropsis gaditana]) HSP 1 Score: 337.0 bits (863), Expect = 4.400e-89 Identity = 154/222 (69.37%), Postives = 184/222 (82.88%), Query Frame = 0
Query: 10 AMVAKRGGAKARKVFLFDLDGTLYPNENGYRDHILNNLWEYMHEHLGIPRSTPAEDVWRPLFNKYHQSFRAFKAQGWIEDSQSIHYWRYIRKDVNRFLSPDAELDVFLSALPKECPKYIFTNAREEQAMEALVCLGVERHFDGVYGSDHMGDYCKPEKEAFEKVLAALPVSSLEG--------------EGEKGREVVLFEDSFKNLMAAKELGMKTILICK 218
A VA + G++ R ++LFDLDGTLY NENGYRD+IL NLWEYMHEH+GIPRSTPA+ +WRPLF+KYHQSFRAFKAQGWI+DS+S HYW YIRKDV++FL PD +LD FL +LPK CPKYIFTNAREEQA EAL CLGVERHF+G++GS+HMGD+CKPE EAFEKVL A+P++ +EG +G G +VLFEDSFKNLMAAK+LGMKT+LIC+
Sbjct: 2 ASVAAKQGSRPRWLYLFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKHCPKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQLGMKTVLICE 223
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02020.2 ID=NO03G02020.2|Name=NO03G02020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2505bp TGAGTTCTGAATGTTGTTTTATATTTTTTTGCGTTCCTTCCTCTCTGCCT TCGGGGAAAATAGAGAGAAAGGGAAGGAAGGAAAGCATGGGAGAGTGCAC CGAGCTCGCAGAGTGCTCTTCGCGGTAGGAAGCAGTCGTGTTTCAGCACA TGGCATATGAGTGCAGCCAACCGATCGTGACAAGCCGTGTGACTGGTTGC TGTTTTCCGCACTATCGGTTTGAAGTGGGGGGAAAGGACTACATCTCTTC TAGATTTGGTTGATTTTCTTTACATATTGCATCCCTGACGGCCTACTATC AAACCACCCTCTCGAAATCTGATGGCTTTAAAAAAATGCATTAACTCGCT ATATTTTCAGATTATCCCTTCTCCCTCCACCTCTATTTTGTCCAATGCAA ACCGTCTTCTCACCTCCTTTATCCCTAGCTCTTCCAAAGCCTCCGCGTTC TTATCAGCGATCTTCTCTGTCAAACCCTCATCCGCGTACGCCCACACCCT TTGTGCTCTCAACAAATTAAACACAGGATATGGGGAGCGCTTTTCATAAT GAATCGGGTCATCATCTTTTACCCCTCCACCGAACATGTACTGAGGGTGA AAAGACGCCACGAGCACTTCCTCCCCCAATGGGCTCTCTTCTAGATGGTC TTCCAGGAACCGTTCCGTCTCGTAGAATGCCGGAAAATCCTCAACAAATG CATAAGGCGCGATCAAGACTGTGGTAGCTGTCTCTGTCTCAGGGACCCCA ATTAATGCGAGGGCCTCCTCCAGCACCAGCACGGCAACTTCTTTTCTCTT TCGGACACGGGTGACGACGTATTTTACGGTGTCGTCTTTTATTACCTTCT CCGCAAAAGGACAGAGAGGGGTGCGGATCACCATGTTATGAATCCAGGCG CAAGTACGCGCAATGATGGCCGCGTCGTCGTCAGTATCGGTATCGGTGTT GTCTTTGGGTGAGAGGAAGGAAGGGCAGGATGACGAGTGAGGAAAGGAGA GTAGGGAGGAGGCGGGGCTGGACGAGACAAAGATGAAACGAGCGTGTTTT ATCAGTGCATCGGAGGAGAAGGGCCTTGAGGGTGGGCGTGGCCTTTTGGC CTGCGACAGTGCCGGGAGTACAAAGGCTGCTGATGGTAATGGCGAACCCT CGGCAAGTAGGAGGAAGAGGAAGGGCAGGCTCAGGAGCTGGGCTACGGGG ATGACGGCCCCAGTCATTCCTGAAAAAGTTCTACATGTCAAAGGAGTGGA GCATGCACATGTTAAGCTTGAGTGTTACTGGGGTGTCACGTAGCCAGCTT GCGTTTCTGCGATGAGCATTGTGACGATGATGCATGGAAGTCTCACACAT AACTTCCTTCACGCCCACACCCACACAACCACACAGCCGACGCTTACCTG GGATAAGACAACAATAATGATAAATACAAGCGGAAGGGCGTAGAGGTTGG GCGCGGCAAGCCTCGCGTGTGGTGTGGTCAAAATGGCATCGGCGGCAGCG GCGGAGGCAGCAATGGTAGCAAAACGAGGCGGCGCCAAGGCTCGCAAGGT CTTTCTGTTTGACTTGGACGGGACTCTCTACCCGAACGAAAATGGCTACC GTGACCACATCCTTAATAACCTGTGGGAGTACATGCACGAACACTTGGGC ATCCCGCGTTCCACCCCGGCGGAGGACGTCTGGCGCCCGCTTTTCAACAA ATACCACCAGTCTTTCCGTGCTTTCAAAGCGCAAGGCTGGATAGAAGACT CTCAGTCCATTCATTACTGGCGGTATATCCGTAAGGACGTCAATCGCTTC CTCTCCCCTGATGCTGAACTAGATGTGTTTTTAAGTGCCCTACCCAAGGA ATGTCCAAAATACATCTTCACCAATGCGCGGGAAGAGCAGGCCATGGAGG CGTTGGTCTGTCTAGGAGTTGAAAGGCATTTTGATGGTGTGTATGGCAGT GACCACATGGGCGATTACTGCAAGCCCGAAAAAGAGGCGTTTGAAAAGGT CTTGGCGGCGTTGCCTGTGTCTTCGCTGGAGGGAGAGGGGGAGAAAGGGA GGGAGGTGGTCCTTTTTGAGGACAGCTTCAAAAATTTGATGGCGGCAAAG GAGCTAGGGATGAAAACAATTTTGATTTGTAAGTGCTCGTTTAGGCTGAG AATGGCATGAGGGGAAAGCAAAATGGTGCGTTGAACTGTTGTATTTATCG ATTTCTTACTTATTTTTGTCTCTTACCCCTCCCTCTACCCTGAACCTGAC AGACAGCAAGACGACAGTGAAGGAGGAGGGCCGGAGCGAGGCGGACTTCC ACACGGTGGATGCGGTGCTACCTCGACTGACGTTGCCAATTGCCCGTAAG AAAGCTTCTTTTTTGTGGGAGGGCTTTGAAAAATAAGGTAGAGAAGGGAA GGAAGAATAAGGATAGGGCGAAATCGGTAGTGAGTTTGAAAAATACGAAG AGGAAATGAAATGAAAGAGAATAAAATGTGAATGACACTGTCAATTTGAA AGACA back to topprotein sequence of NO03G02020.2 >NO03G02020.2-protein ID=NO03G02020.2-protein|Name=NO03G02020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp MASAAAAEAAMVAKRGGAKARKVFLFDLDGTLYPNENGYRDHILNNLWEY MHEHLGIPRSTPAEDVWRPLFNKYHQSFRAFKAQGWIEDSQSIHYWRYIR KDVNRFLSPDAELDVFLSALPKECPKYIFTNAREEQAMEALVCLGVERHF DGVYGSDHMGDYCKPEKEAFEKVLAALPVSSLEGEGEKGREVVLFEDSFK NLMAAKELGMKTILICKCSFRLRMA* back to topmRNA from alignment at chr3:611159..614069- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02020.2 ID=NO03G02020.2|Name=NO03G02020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2911bp|location=Sequence derived from alignment at chr3:611159..614069- (Nannochloropsis oceanica) TGAGTTCTGAATGTTGTTTTATATTTTTTTGCGTTCCTTCCTCTCTGCCT
TCGGGGAAAATAGAGAGAAAGGGAAGGAAGGAAAGCATGGGAGAGTGCAC
CGAGCTCGCAGAGTGCTCTTCGCGGTAGGAAGCAGTCGTGTTTCAGCACA
TGGCATATGAGTGCAGCCAACCGATCGTGACAAGCCGTGTGACTGGTTGC
TGTTTTCCGCACTATCGGTTTGAAGTGGGGGGAAAGGACTACATCTCTTC
TAGATTTGGTTGATTTTCTTTACATATTGCATCCCTGACGGCCTACTATC
AAACCACCCTCTCGAAATCTGATGGCTTTAAAAAAATGCATTAACTCGCT
ATATTTTCAGATTATCCCTTCTCCCTCCACCTCTATTTTGTCCAATGCAA
ACCGTCTTCTCACCTCCTTTATCCCTAGCTCTTCCAAAGCCTCCGCGTTC
TTATCAGCGATCTTCTCTGTCAAACCCTCATCCGCGTACGCCCACACCCT
TTGTGCTCTCAACAAATTAAACACAGGATATGGGGAGCGCTTTTCATAAT
GAATCGGGTCATCATCTTTTACCCCTCCACCGAACATGTACTGAGGGTGA
AAAGACGCCACGAGCACTTCCTCCCCCAATGGGCTCTCTTCTAGATGGTC
TTCCAGGAACCGTTCCGTCTCGTAGAATGCCGGAAAATCCTCAACAAATG
CATAAGGCGCGATCAAGACTGTGGTAGCTGTCTCTGTCTCAGGGACCCCA
ATTAATGCGAGGGCCTCCTCCAGCACCAGCACGGCAACTTCTTTTCTCTT
TCGGACACGGGTGACGACGTATTTTACGGTGTCGTCTTTTATTACCTTCT
CCGCAAAAGGACAGAGAGGGGTGCGGATCACCATGTTATGAATCCAGGCG
CAAGTACGCGCAATGATGGCCGCGTCGTCGTCAGTATCGGTATCGGTGTT
GTCTTTGGGTGAGAGGAAGGAAGGGCAGGATGACGAGTGAGGAAAGGAGA
GTAGGGAGGAGGCGGGGCTGGACGAGACAAAGATGAAACGAGCGTGTTTT
ATCAGTGCATCGGAGGAGAAGGGCCTTGAGGGTGGGCGTGGCCTTTTGGC
CTGCGACAGTGCCGGGAGTACAAAGGCTGCTGATGGTAATGGCGAACCCT
CGGCAAGTAGGAGGAAGAGGAAGGGCAGGCTCAGGAGCTGGGCTACGGGG
ATGACGGCCCCAGTCATTCCTGAAAAAGTTCTACATGTCAAAGGAGTGGA
GCATGCACATGTTAAGCTTGAGTGTTACTGGGGTGTCACGTAGCCAGCTT
GCGTTTCTGCGATGAGCATTGTGACGATGATGCATGGAAGTCTCACACAT
AACTTCCTTCACGCCCACACCCACACAACCACACAGCCGACGCTTACCTG
GGATAAGACAACAATAATGATAAATACAAGCGGAAGGGCGTAGAGGTTGG
GCGCGGCAAGCCTCGCGTGTGGTGTGGTCAAAATGGTAAGTGCATTGATT
GAGGAAAGCTGCGATGATGATCCAAGACTGCAGGGTTGTCTATGCCTGCA
GCCCAGCCAGCCACAATTGCTGCGGGCCCATCGTGCAAGCATACACAAGC
GCATCAATGTCCTGATGCAGGATGCCTGGTCCTCATATTATTCCCTCCTT
CCGATACCTCTGAAAATAGGCATCGGCGGCAGCGGCGGAGGCAGCAATGG
TAGCAAAACGAGGCGGCGCCAAGGCTCGCAAGGTCTTTCTGTTTGACTTG
GACGGGACTCTCTACCCGAACGAAAATGGCTACCGTGACCACATCCTTAA
TAACCTGTGGGAGTACATGCACGAACACTTGGGCATCCCGCGTTCCACCC
CGGCGGAGGACGTCTGGTAAGTAAAGTATGGGGGTTGCTTGTCATTTTGG
GGGCAGGGATGGCGGGTGAGGAAGGGAAGGGACGTCATTTAAGTGAGCTC
TCGACGAGAGCTTCGGAAAGCTCATGTCCAGGATGGCGAATATTGTCTCG
TGTAAAGTATCGATGCGTGCTCCTAATTGATATTCTTCCCCTTCCTCACT
TCTCTCTCTCTATCCCTCCCTCCCTTCACACCTCATAGGCGCCCGCTTTT
CAACAAATACCACCAGTCTTTCCGTGCTTTCAAAGCGCAAGGCTGGATAG
AAGACTCTCAGTCCATTCATTACTGGCGGTATATCCGTAAGGACGTCAAT
CGCTTCCTCTCCCCTGATGCTGAACTAGATGTGTTTTTAAGTGCCCTACC
CAAGGAATGTCCAAAATACATCTTCACCAATGCGCGGGAAGAGCAGGCCA
TGGAGGCGTTGGTCTGTCTAGGAGTTGAAAGGCATTTTGATGGTGTGTAT
GGCAGTGACCACATGGGCGATTACTGCAAGCCCGAAAAAGAGGCGTTTGA
AAAGGTCTTGGCGGCGTTGCCTGTGTCTTCGCTGGAGGGAGAGGGGGAGA
AAGGGAGGGAGGTGGTCCTTTTTGAGGACAGCTTCAAAAATTTGATGGCG
GCAAAGGAGCTAGGGATGAAAACAATTTTGATTTGTAAGTGCTCGTTTAG
GCTGAGAATGGCATGAGGGGAAAGCAAAATGGTGCGTTGAACTGTTGTAT
TTATCGATTTCTTACTTATTTTTGTCTCTTACCCCTCCCTCTACCCTGAA
CCTGACAGACAGCAAGACGACAGTGAAGGAGGAGGGCCGGAGCGAGGCGG
ACTTCCACACGGTGGATGCGGTGCTACCTCGACTGACGTTGCCAATTGCC
CGTAAGAAAGCTTCTTTTTTGTGGGAGGGCTTTGAAAAATAAGGTAGAGA
AGGGAAGGAAGAATAAGGATAGGGCGAAATCGGTAGTGAGTTTGAAAAAT
ACGAAGAGGAAATGAAATGAAAGAGAATAAAATGTGAATGACACTGTCAA
TTTGAAAGACA back to topCoding sequence (CDS) from alignment at chr3:611159..614069- >NO03G02020.2 ID=NO03G02020.2|Name=NO03G02020.2|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr3:611159..614069- (Nannochloropsis oceanica) ATGGCATCGGCGGCAGCGGCGGAGGCAGCAATGGTAGCAAAACGAGGCGG CGCCAAGGCTCGCAAGGTCTTTCTGTTTGACTTGGACGGGACTCTCTACC CGAACGAAAATGGCTACCGTGACCACATCCTTAATAACCTGTGGGAGTAC ATGCACGAACACTTGGGCATCCCGCGTTCCACCCCGGCGGAGGACGTCTG GCGCCCGCTTTTCAACAAATACCACCAGTCTTTCCGTGCTTTCAAAGCGC AAGGCTGGATAGAAGACTCTCAGTCCATTCATTACTGGCGGTATATCCGT AAGGACGTCAATCGCTTCCTCTCCCCTGATGCTGAACTAGATGTGTTTTT AAGTGCCCTACCCAAGGAATGTCCAAAATACATCTTCACCAATGCGCGGG AAGAGCAGGCCATGGAGGCGTTGGTCTGTCTAGGAGTTGAAAGGCATTTT GATGGTGTGTATGGCAGTGACCACATGGGCGATTACTGCAAGCCCGAAAA AGAGGCGTTTGAAAAGGTCTTGGCGGCGTTGCCTGTGTCTTCGCTGGAGG GAGAGGGGGAGAAAGGGAGGGAGGTGGTCCTTTTTGAGGACAGCTTCAAA AATTTGATGGCGGCAAAGGAGCTAGGGATGAAAACAATTTTGATTTGTAA GTGCTCGTTTAGGCTGAGAATGGCATGA back to top
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