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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:466827..469016 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01530.1 vs.
Match: EWM29576.1 (mate efflux family protein [Nannochloropsis gaditana]) HSP 1 Score: 875.2 bits (2260), Expect = 1.200e-250 Identity = 478/618 (77.35%), Postives = 523/618 (84.63%), Query Frame = 0
Query: 1 MRRLQIILQLSVLVGVAAAFTSLS---TITHRYDSSSGSTGGRS----SGGGREGG--SSRTCRFWPTTQRKLLCTAIPPTPLSASGVGNSDSSLSQHSHLHHQPPAAAT---TTVEVAHGHSVAHGGRRQGMLRSLRSGWTKLVTPQEYDRQIWELALPTLGAVLIDPCLSLVDTMFVGKLGHIALASMGPCTALYNMIFATASCMFSVSTAVLIARYKALGDREATGRTIFTGMASALTLGIFFTMLMASRPAAALRLMGASSPDMIRLGAPYLLWRATALPANMFLLVAGGAFRGIGNARENFTNGLVVGLINLILDPLLMFKFGLGVKGAAMATAIAQWIGALSYVIKMARKKEIFGLNLGLKVIPKIEDVKEFWTAGVAMLFRSLCNVGAWTLMASIATRMGVVEIAAHQLILSMWLVIAFVQDAVGAAGQVLVSQQMGHSGSSRHAIRRGKARARAIAKRAISFSAVIGLVLSLVSQMVLPSLIPLFCSSPEVVALTSSVLPIVLLGFPICCVVWTWDSVYYGASDFKYNAKVIAMSSSIAVSLTLASLHYEWGLIGLWSSMVFVYFGLRVVAHYRRFNSEHGPFGKSTLSLSEGDDGGGQTMMNEAVPQIS 607
M RL I+LQL++LV V AAFTSLS T R S+G + R+ GG R G S R QRK LC+ +P TPLSAS G S+ S H HQ P+A T V AH H GG + G+LRSL+ W +L QEYD QIWELALPTLGAVLIDPCLSLVDTMFVGKLGH+ALASMGPCTALYNMIFATASCMFSVSTAVLIARYKALGD +ATGRT+FT + S++ LGIFFT+LMASRP+ ALRLMGASSP+MIRLGAPYLLWRATALPANMFLLVAGGAFRGIGNARENFTNGLVVGL+NL+LDP+LMF LGV GAAMATAIAQWIGALSY+ KM R+KE FGLNLG K+IP + DV+EF TAG AMLFRSLCNVGAWTLMASIATRMGVVEIAAHQLILSMWLVIAFVQDAVGAAGQVLVSQQ+G+ GSSRHAIRRGKARARAIAKR ISFSA+IG+ LSL+ Q+VLPSLIPLFCSSPEV+ALTSSVLPIVLLGFP+CCVVWTWDSVYYGASDFKYNAKVIA+SSSIAVSLTLASLHYEWGL+GLWSSMVFVYFGLRVVAHYRRFNSEHGPFGKSTLSL+E DDG GQT+M++AVPQIS
Sbjct: 64 MYRLHILLQLTLLVVVTAAFTSLSGGSLSTCRRGPSTGCSTPRTLDVERGGIRRVGVTSGRISGHSLALQRKYLCSTMPLTPLSASSGGTSEPS-----HNMHQAPSAVTPVPAAVHAAHSHIGEEGGHQGGILRSLKENWARLTRVQEYDGQIWELALPTLGAVLIDPCLSLVDTMFVGKLGHVALASMGPCTALYNMIFATASCMFSVSTAVLIARYKALGDGQATGRTLFTAITSSVALGIFFTVLMASRPSQALRLMGASSPEMIRLGAPYLLWRATALPANMFLLVAGGAFRGIGNARENFTNGLVVGLVNLVLDPVLMFSCNLGVAGAAMATAIAQWIGALSYIFKMTRRKEAFGLNLGWKIIPGMADVQEFLTAGTAMLFRSLCNVGAWTLMASIATRMGVVEIAAHQLILSMWLVIAFVQDAVGAAGQVLVSQQLGNPGSSRHAIRRGKARARAIAKRVISFSAIIGVALSLIGQIVLPSLIPLFCSSPEVIALTSSVLPIVLLGFPVCCVVWTWDSVYYGASDFKYNAKVIAVSSSIAVSLTLASLHYEWGLLGLWSSMVFVYFGLRVVAHYRRFNSEHGPFGKSTLSLNERDDGAGQTLMSDAVPQIS 676
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01530.1 ID=NO03G01530.1|Name=NO03G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp ATGCGCCGTTTACAAATAATTCTGCAGCTAAGCGTGCTGGTGGGCGTCGC GGCGGCCTTCACGAGTTTATCAACGATCACGCACCGGTACGATTCAAGCA GCGGCAGCACCGGCGGGAGAAGCAGTGGAGGTGGCAGAGAGGGCGGAAGC AGCCGAACATGCAGATTCTGGCCGACAACTCAACGAAAGTTGCTCTGCAC CGCAATACCGCCCACTCCTCTGTCCGCCTCGGGAGTGGGCAACTCAGATT CGTCGCTCTCCCAGCATTCTCACCTACATCACCAGCCACCAGCAGCAGCT ACGACAACCGTCGAGGTAGCGCACGGCCATTCCGTAGCTCATGGAGGGCG ACGCCAGGGTATGTTGCGTTCATTGCGGAGTGGTTGGACTAAGCTTGTGA CCCCGCAAGAGTACGATAGGCAGATATGGGAGCTGGCCTTGCCCACTCTC GGCGCTGTGCTGATTGATCCTTGCTTGTCCTTGGTGGACACAATGTTCGT GGGGAAGCTGGGTCATATTGCCTTGGCATCGATGGGGCCTTGTACCGCGT TGTATAATATGATATTTGCCACAGCTTCTTGCATGTTTTCCGTCTCAACC GCCGTGCTAATCGCCCGCTACAAGGCCCTCGGCGACCGAGAAGCCACAGG CCGCACCATCTTTACCGGCATGGCATCAGCCCTGACCCTCGGGATATTCT TCACCATGTTAATGGCGTCTCGTCCAGCAGCAGCCCTTCGGTTGATGGGA GCAAGCTCACCCGATATGATCAGGTTGGGAGCTCCGTACCTGTTGTGGCG CGCCACGGCCTTGCCTGCGAACATGTTTCTGTTGGTGGCAGGCGGCGCGT TTAGGGGAATTGGAAATGCGAGAGAGAATTTCACGAATGGCCTAGTGGTA GGTCTGATTAACTTGATTTTGGACCCACTTTTAATGTTCAAGTTCGGCTT AGGTGTGAAAGGTGCGGCCATGGCCACGGCAATCGCTCAGTGGATAGGCG CCCTCTCATACGTGATCAAAATGGCCCGAAAAAAAGAAATTTTTGGCTTA AACTTGGGACTCAAAGTCATTCCGAAAATTGAGGACGTGAAAGAATTTTG GACGGCGGGAGTGGCGATGTTGTTCAGGTCTTTGTGTAATGTAGGGGCGT GGACTCTGATGGCGTCGATTGCGACGAGGATGGGGGTGGTGGAGATCGCA GCGCATCAATTAATTTTGAGCATGTGGTTGGTGATTGCCTTTGTCCAGGA TGCGGTGGGCGCGGCGGGACAGGTGCTGGTGAGTCAGCAAATGGGGCATT CAGGGAGTAGTCGGCATGCTATTAGGCGAGGGAAGGCACGGGCGAGGGCG ATTGCGAAACGTGCCATCAGCTTCTCGGCTGTGATTGGCTTGGTTTTGTC ACTGGTGAGTCAAATGGTCTTGCCGTCCTTGATCCCGTTGTTTTGCTCGT CACCGGAGGTGGTGGCATTGACCAGCAGTGTGTTGCCAATTGTATTATTG GGGTTTCCCATCTGTTGCGTGGTTTGGACGTGGGATAGCGTGTATTATGG CGCGAGTGATTTTAAATACAATGCCAAAGTCATTGCGATGTCGTCGTCGA TTGCCGTGAGTCTGACTCTGGCGAGTTTGCATTATGAATGGGGATTGATT GGGTTGTGGTCGTCGATGGTGTTTGTTTACTTTGGTTTGAGGGTGGTGGC GCATTATAGACGGTTCAATTCGGAGCATGGCCCGTTCGGGAAGAGCACGT TGTCGTTGAGTGAGGGGGATGATGGAGGGGGGCAAACGATGATGAATGAG GCGGTGCCTCAGATAAGTTGA back to topprotein sequence of NO03G01530.1 >NO03G01530.1-protein ID=NO03G01530.1-protein|Name=NO03G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp MRRLQIILQLSVLVGVAAAFTSLSTITHRYDSSSGSTGGRSSGGGREGGS SRTCRFWPTTQRKLLCTAIPPTPLSASGVGNSDSSLSQHSHLHHQPPAAA TTTVEVAHGHSVAHGGRRQGMLRSLRSGWTKLVTPQEYDRQIWELALPTL GAVLIDPCLSLVDTMFVGKLGHIALASMGPCTALYNMIFATASCMFSVST AVLIARYKALGDREATGRTIFTGMASALTLGIFFTMLMASRPAAALRLMG ASSPDMIRLGAPYLLWRATALPANMFLLVAGGAFRGIGNARENFTNGLVV GLINLILDPLLMFKFGLGVKGAAMATAIAQWIGALSYVIKMARKKEIFGL NLGLKVIPKIEDVKEFWTAGVAMLFRSLCNVGAWTLMASIATRMGVVEIA AHQLILSMWLVIAFVQDAVGAAGQVLVSQQMGHSGSSRHAIRRGKARARA IAKRAISFSAVIGLVLSLVSQMVLPSLIPLFCSSPEVVALTSSVLPIVLL GFPICCVVWTWDSVYYGASDFKYNAKVIAMSSSIAVSLTLASLHYEWGLI GLWSSMVFVYFGLRVVAHYRRFNSEHGPFGKSTLSLSEGDDGGGQTMMNE AVPQIS* back to topmRNA from alignment at chr3:466827..469016- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01530.1 ID=NO03G01530.1|Name=NO03G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at chr3:466827..469016- (Nannochloropsis oceanica) ATGCGCCGTTTACAAATAATTCTGCAGCTAAGCGTGCTGGTGGGCGTCGC
GGCGGCCTTCACGAGTTTATCAACGATCACGCACCGGTACGATTCAAGCA
GCGGCAGCACCGGCGGGAGAAGCAGTGGAGGTGGCAGAGAGGGCGGAAGC
AGCCGAACATGCAGATTCTGGCCGACAACTCAACGAAAGTTGCTCTGCAC
CGCAATACCGCCCACTCCTCTGTCCGCCTCGGGAGTGGGCAACTCAGATT
CGTCGCTCTCCCAGCATTCTCACCTACATCACCAGCCACCAGCAGCAGCT
ACGACAACCGTCGAGGTAGCGCACGGCCATTCCGTAGCTCATGGAGGGCG
ACGCCAGGGTATGTTGCGTTCATTGCGGAGTGGTTGGACTAAGCTTGTGA
CCCCGCAAGAGTACGATAGGCAGATATGGGAGCTGGCCTTGCCCACTCTC
GGCGCTGTGCTGATTGATCCTTGCTTGTCCTTGGTGGACACAATGTTCGT
GGGGAAGCTGGGTCATATTGCCTTGGCATCGATGGGGCCTTGTACCGCGT
TGTATAATATGATATTTGCCACAGCTTCTTGGTAAGTCGATTAATGGGAC
GTATAAAATGCCCCACTTGTTTCACGCCGTCGCTCGCTGTGACTGTCCCT
TTCTCCCTTCATTCTCAGTGCACTGATGCACCAGGACCGTTGTCTTATGC
TCCCATTTTCCCCCTTAATCCCTGCTCATTAAACTCGATCACTTCCCACA
TAATTCCTTCCCCCACACCCCCTCCCTGCCCCCCCCCTTTCTCGTTACAG
CATGTTTTCCGTCTCAACCGCCGTGCTAATCGCCCGCTACAAGGCCCTCG
GCGACCGAGAAGCCACAGGCCGCACCATCTTTACCGGCATGGCATCAGCC
CTGACCCTCGGGATATTCTTCACCATGTTAATGGCGTCTCGTCCAGCAGC
AGCCCTTCGGTTGATGGGAGCAAGCTCACCCGATATGATCAGGTTGGGAG
CTCCGTACCTGTTGTGGCGCGCCACGGCCTTGCCTGCGAACATGTTTCTG
TTGGTGGCAGGCGGCGCGTTTAGGGGAATTGGAAATGCGAGAGAGAATTT
CACGAATGGCCTAGTGGTAGGTCTGATTAACTTGATTTTGGACCCACTTT
TAATGTTCAAGTTCGGCTTAGGTGTGAAAGGTACGTAAGGAGGAAGGGCG
AGAGGAGGGAAATGATTCATCCCGGAGTCATATTTTTCATGTCTTCTGCT
TTCATGACACAAAAGTCACCTATTCACCTTTTCATACTCCTCCCCTCACT
CCCATCCTCGTTTCCTCTCATTCCGCAAAGGTGCGGCCATGGCCACGGCA
ATCGCTCAGTGGATAGGCGCCCTCTCATACGTGATCAAAATGGCCCGAAA
AAAAGAAATTTTTGGCTTAAACTTGGGACTCAAAGTCATTCCGAAAATTG
AGGACGTGAAAGAATTTTGGACGGCGGGAGTGGCGATGTTGTTCAGGTCT
TTGTGTAATGTAGGGGCGTGGACTCTGATGGCGTCGATTGCGACGAGGAT
GGGGGTGGTGGAGATCGCAGCGCATCAATTAATTTTGAGCATGTGGTTGG
TGATTGCCTTTGTCCAGGATGCGGTGGGCGCGGCGGGACAGGTGCTGGTG
AGTCAGCAAATGGGGCATTCAGGGAGTAGTCGGCATGCTATTAGGCGAGG
GAAGGCACGGGCGAGGGCGATTGCGAAACGTGCCATCAGCTTCTCGGCTG
TGATTGGCTTGGTTTTGTCACTGGTGAGTCAAATGGTCTTGCCGTCCTTG
ATCCCGTTGTTTTGCTCGTCACCGGAGGTGGTGGCATTGACCAGCAGTGT
GTTGCCAATTGTATTATTGGGGTTTCCCATCTGTTGCGTGGTTTGGACGT
GGGATAGCGTGTATTATGGCGCGAGTGATTTTAAATACAATGCCAAAGTC
ATTGCGATGTCGTCGTCGATTGCCGTGAGTCTGACTCTGGCGAGTTTGCA
TTATGAATGGGGATTGATTGGGTTGTGGTCGTCGATGGTGTTTGTTTACT
TTGGTTTGAGGGTGGTGGCGCATTATAGACGGTTCAATTCGGAGCATGGC
CCGTTCGGGAAGAGCACGTTGTCGTTGAGTGAGGGGGATGATGGAGGGGG
GCAAACGATGATGAATGAGGCGGTGCCTCAGATAAGTTGA back to topCoding sequence (CDS) from alignment at chr3:466827..469016- >NO03G01530.1 ID=NO03G01530.1|Name=NO03G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=1821bp|location=Sequence derived from alignment at chr3:466827..469016- (Nannochloropsis oceanica) ATGCGCCGTTTACAAATAATTCTGCAGCTAAGCGTGCTGGTGGGCGTCGC GGCGGCCTTCACGAGTTTATCAACGATCACGCACCGGTACGATTCAAGCA GCGGCAGCACCGGCGGGAGAAGCAGTGGAGGTGGCAGAGAGGGCGGAAGC AGCCGAACATGCAGATTCTGGCCGACAACTCAACGAAAGTTGCTCTGCAC CGCAATACCGCCCACTCCTCTGTCCGCCTCGGGAGTGGGCAACTCAGATT CGTCGCTCTCCCAGCATTCTCACCTACATCACCAGCCACCAGCAGCAGCT ACGACAACCGTCGAGGTAGCGCACGGCCATTCCGTAGCTCATGGAGGGCG ACGCCAGGGTATGTTGCGTTCATTGCGGAGTGGTTGGACTAAGCTTGTGA CCCCGCAAGAGTACGATAGGCAGATATGGGAGCTGGCCTTGCCCACTCTC GGCGCTGTGCTGATTGATCCTTGCTTGTCCTTGGTGGACACAATGTTCGT GGGGAAGCTGGGTCATATTGCCTTGGCATCGATGGGGCCTTGTACCGCGT TGTATAATATGATATTTGCCACAGCTTCTTGCATGTTTTCCGTCTCAACC GCCGTGCTAATCGCCCGCTACAAGGCCCTCGGCGACCGAGAAGCCACAGG CCGCACCATCTTTACCGGCATGGCATCAGCCCTGACCCTCGGGATATTCT TCACCATGTTAATGGCGTCTCGTCCAGCAGCAGCCCTTCGGTTGATGGGA GCAAGCTCACCCGATATGATCAGGTTGGGAGCTCCGTACCTGTTGTGGCG CGCCACGGCCTTGCCTGCGAACATGTTTCTGTTGGTGGCAGGCGGCGCGT TTAGGGGAATTGGAAATGCGAGAGAGAATTTCACGAATGGCCTAGTGGTA GGTCTGATTAACTTGATTTTGGACCCACTTTTAATGTTCAAGTTCGGCTT AGGTGTGAAAGGTGCGGCCATGGCCACGGCAATCGCTCAGTGGATAGGCG CCCTCTCATACGTGATCAAAATGGCCCGAAAAAAAGAAATTTTTGGCTTA AACTTGGGACTCAAAGTCATTCCGAAAATTGAGGACGTGAAAGAATTTTG GACGGCGGGAGTGGCGATGTTGTTCAGGTCTTTGTGTAATGTAGGGGCGT GGACTCTGATGGCGTCGATTGCGACGAGGATGGGGGTGGTGGAGATCGCA GCGCATCAATTAATTTTGAGCATGTGGTTGGTGATTGCCTTTGTCCAGGA TGCGGTGGGCGCGGCGGGACAGGTGCTGGTGAGTCAGCAAATGGGGCATT CAGGGAGTAGTCGGCATGCTATTAGGCGAGGGAAGGCACGGGCGAGGGCG ATTGCGAAACGTGCCATCAGCTTCTCGGCTGTGATTGGCTTGGTTTTGTC ACTGGTGAGTCAAATGGTCTTGCCGTCCTTGATCCCGTTGTTTTGCTCGT CACCGGAGGTGGTGGCATTGACCAGCAGTGTGTTGCCAATTGTATTATTG GGGTTTCCCATCTGTTGCGTGGTTTGGACGTGGGATAGCGTGTATTATGG CGCGAGTGATTTTAAATACAATGCCAAAGTCATTGCGATGTCGTCGTCGA TTGCCGTGAGTCTGACTCTGGCGAGTTTGCATTATGAATGGGGATTGATT GGGTTGTGGTCGTCGATGGTGTTTGTTTACTTTGGTTTGAGGGTGGTGGC GCATTATAGACGGTTCAATTCGGAGCATGGCCCGTTCGGGAAGAGCACGT TGTCGTTGAGTGAGGGGGATGATGGAGGGGGGCAAACGATGATGAATGAG GCGGTGCCTCAGATAAGTTGA back to top
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