NO03G01380.1, NO03G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01380.1
Unique NameNO03G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length513
Alignment locationchr3:427831..428343 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:427831..428343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01380.1 vs.
Match: XP_005853990.1 (hypothetical protein NGA_2031600, partial [Nannochloropsis gaditana CCMP526]; EKU22369.1 hypothetical protein NGA_2031600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 265.8 bits (678), Expect = 9.400e-68
Identity = 124/146 (84.93%), Postives = 136/146 (93.15%), Query Frame = 0 
Query:   25 ALTRKPRLVYFHGTTAVAHGSGKDLNDAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVILEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            AL + PR++ FH T  VAHGSGKDL +APRI LHWIGKKGEEF+TDGIVGESIL+AAHRHEVELEGACEGVCACSTCHVILE+PVFE LEDPSEEEEDMLDQAFGLTPTSRLGCQVEL+Q +DG++IKLP+ATRNFYIDGHVPKPH
Sbjct:   28 ALIQIPRIL-FHATARVAHGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 172
The following BLAST results are available for this feature:
BLAST of NO03G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853990.19.400e-6884.93hypothetical protein NGA_2031600, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01380NO03G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01380.1NO03G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01380.1.cds1NO03G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01380.1 ID=NO03G01380.1|Name=NO03G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=513bp
ATGCTCGCAGCTAAAATCCGCCGGGTGGCTGGGACCGCTATCACCAAAAC
TACTACCGCCGCAGCAGCAAGCGCTTTAACAAGAAAACCACGATTAGTAT
ACTTCCATGGTACCACGGCTGTGGCGCACGGCAGTGGCAAGGATCTGAAT
GACGCGCCGCGCATTACATTGCATTGGATCGGCAAGAAAGGGGAGGAGTT
CAGCACGGACGGGATCGTGGGCGAAAGCATCCTGGACGCGGCGCACCGGC
ATGAAGTGGAGTTGGAAGGGGCGTGCGAAGGTGTGTGTGCATGTTCAACA
TGCCACGTAATTTTGGAAGACCCTGTATTTGAGAAGCTGGAAGACCCATC
GGAGGAGGAAGAGGATATGCTAGATCAGGCGTTTGGGCTCACTCCTACGT
CGCGGCTAGGGTGTCAGGTGGAATTGACTCAAGTCCTGGATGGCATAAGG
ATTAAACTACCAACTGCGACGCGTAATTTCTATATTGATGGGCATGTGCC
GAAGCCACATTAG
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protein sequence of NO03G01380.1

>NO03G01380.1-protein ID=NO03G01380.1-protein|Name=NO03G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MLAAKIRRVAGTAITKTTTAAAASALTRKPRLVYFHGTTAVAHGSGKDLN
DAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACST
CHVILEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIR
IKLPTATRNFYIDGHVPKPH*
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mRNA from alignment at chr3:427831..428343+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01380.1 ID=NO03G01380.1|Name=NO03G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=513bp|location=Sequence derived from alignment at chr3:427831..428343+ (Nannochloropsis oceanica)
ATGCTCGCAGCTAAAATCCGCCGGGTGGCTGGGACCGCTATCACCAAAAC
TACTACCGCCGCAGCAGCAAGCGCTTTAACAAGAAAACCACGATTAGTAT
ACTTCCATGGTACCACGGCTGTGGCGCACGGCAGTGGCAAGGATCTGAAT
GACGCGCCGCGCATTACATTGCATTGGATCGGCAAGAAAGGGGAGGAGTT
CAGCACGGACGGGATCGTGGGCGAAAGCATCCTGGACGCGGCGCACCGGC
ATGAAGTGGAGTTGGAAGGGGCGTGCGAAGGTGTGTGTGCATGTTCAACA
TGCCACGTAATTTTGGAAGACCCTGTATTTGAGAAGCTGGAAGACCCATC
GGAGGAGGAAGAGGATATGCTAGATCAGGCGTTTGGGCTCACTCCTACGT
CGCGGCTAGGGTGTCAGGTGGAATTGACTCAAGTCCTGGATGGCATAAGG
ATTAAACTACCAACTGCGACGCGTAATTTCTATATTGATGGGCATGTGCC
GAAGCCACATTAG
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Coding sequence (CDS) from alignment at chr3:427831..428343+

>NO03G01380.1 ID=NO03G01380.1|Name=NO03G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at chr3:427831..428343+ (Nannochloropsis oceanica)
ATGCTCGCAGCTAAAATCCGCCGGGTGGCTGGGACCGCTATCACCAAAAC
TACTACCGCCGCAGCAGCAAGCGCTTTAACAAGAAAACCACGATTAGTAT
ACTTCCATGGTACCACGGCTGTGGCGCACGGCAGTGGCAAGGATCTGAAT
GACGCGCCGCGCATTACATTGCATTGGATCGGCAAGAAAGGGGAGGAGTT
CAGCACGGACGGGATCGTGGGCGAAAGCATCCTGGACGCGGCGCACCGGC
ATGAAGTGGAGTTGGAAGGGGCGTGCGAAGGTGTGTGTGCATGTTCAACA
TGCCACGTAATTTTGGAAGACCCTGTATTTGAGAAGCTGGAAGACCCATC
GGAGGAGGAAGAGGATATGCTAGATCAGGCGTTTGGGCTCACTCCTACGT
CGCGGCTAGGGTGTCAGGTGGAATTGACTCAAGTCCTGGATGGCATAAGG
ATTAAACTACCAACTGCGACGCGTAATTTCTATATTGATGGGCATGTGCC
GAAGCCACATTAG
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Synonyms
Publications