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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:163440..165110 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00530.1 vs.
Match: EWM29500.1 (Armadillo-like helical [Nannochloropsis gaditana]) HSP 1 Score: 259.6 bits (662), Expect = 2.000e-65 Identity = 171/381 (44.88%), Postives = 218/381 (57.22%), Query Frame = 0
Query: 24 LSSCSLLLLLLLLLPSPTSAATGENEEKQICKEENVFHATNEWQPIPRDASVPPGLHVKLDLSTGERLGKLLDADETAQAAATGAAGTAVSTSSTFIPLNQNKSQNGGGLLDSITIKNTPEEALDAASGPLPTRRETMLKVISNLPPVERASMGVDALLATRP----------PDLSHPEEEEVFWQKVEGLWEERQAMLQQAYDNMLKPAEELGRLIQVLREGAGEEGLLLQALIELEDWLSDVDMAQDFYTLGGWPL----LGWVLEKGKEGEGDSALTLLVEILREAAEGGVEGEEREHGEELLRKTVYALTSAARGNALVQSQLL---KEGGLEVMGRLLASSPSSSSSSSGQRALRLKLVAFAHDMILEARQGQEA 388
L S SLL+ L++ + AA +E EENVF AT EWQ IP ASVPPGLHVKLDLSTGERLGKL+D E G + +T + ++ G+LDS+ IKNTPEE L+A+ GP +RR TMLKV+S LPP ERASMG+D+LLA+RP + EEE FW++VE LW ERQ +L QAY+NMLKPAEELGRLI VL+EG EE +++AL+ELEDWLSDVDMAQDFYTLGGWPL LGW EGG RE G E+ + + + +A + + Q+ +L KEGG + RLL + + G+ +L+ A + A +G A
Sbjct: 47 LCSISLLVFLIVSFAAEQPAAKISPQE-----EENVFVATTEWQAIPPGASVPPGLHVKLDLSTGERLGKLMDGPERQALRPAGQRKEESALQATDVAGFKSNKTGAKGILDSVVIKNTPEETLEASQGPPLSRRGTMLKVLSGLPPQERASMGIDSLLASRPRAGEALGEEVVEGEEREEERAFWKQVETLWAERQDLLLQAYENMLKPAEELGRLIGVLKEGGEEE--VMRALMELEDWLSDVDMAQDFYTLGGWPLLVSKLGW-------------------------EGG-----REGGREVQWRAAWVVGNAVKNDRHFQAWVLEGGKEGGASALTRLLTICREGGTEAWGEGEEEEELLRKAVYAVTSAARGNPA 390
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G00530.1 ID=NO03G00530.1|Name=NO03G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp ATGGCGCGCTCATGGCCACATCAACCCTGTCGTCCTTCTTGCAACACAGT CCTCGTCGTCCTCTCCACCCTCTCCAGCTGCTCCCTCCTCCTCCTCCTCC TCCTCCTCCTACCCTCCCCCACCAGCGCAGCAACGGGAGAGAATGAAGAA AAGCAAATCTGCAAGGAAGAAAACGTCTTTCATGCTACCAACGAATGGCA GCCCATCCCACGCGATGCATCGGTCCCTCCAGGGTTGCACGTGAAGCTGG ATTTGTCGACGGGCGAGAGACTGGGCAAGCTCCTAGACGCAGACGAGACA GCACAAGCAGCAGCAACAGGAGCTGCTGGAACTGCCGTCAGCACTTCCTC AACTTTCATACCCCTCAACCAGAACAAGTCACAGAATGGAGGAGGGCTGC TTGATAGCATTACCATCAAAAACACCCCGGAAGAGGCCTTGGACGCGGCC AGTGGCCCCCTTCCCACTCGCCGGGAAACCATGCTCAAAGTCATCTCCAA CCTCCCCCCTGTCGAGCGCGCCAGCATGGGTGTCGATGCCCTCCTTGCCA CTCGTCCTCCTGACTTGTCGCACCCCGAAGAAGAAGAAGTGTTTTGGCAG AAGGTGGAGGGTTTGTGGGAGGAAAGGCAAGCGATGCTGCAGCAGGCATA TGACAACATGCTCAAGCCCGCGGAGGAACTGGGGAGGTTGATACAGGTGC TGAGGGAGGGAGCTGGGGAGGAAGGGTTGCTACTACAAGCATTGATAGAA TTGGAAGACTGGTTGTCGGATGTGGACATGGCTCAGGACTTTTATACCTT GGGCGGGTGGCCTTTATTGGGATGGGTTTTGGAGAAAGGGAAGGAGGGAG AGGGGGACTCTGCGTTGACGCTTTTGGTGGAAATACTGCGGGAGGCGGCG GAGGGCGGGGTGGAGGGGGAGGAGAGGGAGCACGGGGAGGAGTTGTTGAG GAAGACCGTATATGCCTTGACATCGGCAGCAAGGGGAAACGCTTTGGTGC AATCCCAATTGCTCAAGGAGGGGGGGTTGGAGGTCATGGGTCGCCTCCTC GCCTCCTCCCCTTCCTCGTCCTCGTCCTCGAGTGGACAGCGGGCTCTTCG ATTGAAGCTTGTTGCCTTTGCTCATGACATGATACTGGAGGCCAGACAAG GACAGGAAGCCAGGAGTGACGACGCCGACCTGGTGCCAGGGGGCGTTGGT CTTGCTGGAGGAGGTGGCGAGGGAGGGAGGGAAGGGGGAGGGAGTACAGG GGCGCAGGCGGTGGAGACGGAAAAGGTGGTGGAGGCCTTAGGACTTTTGC ACGGTGGGTGCAGTGGGCACGGGCATTGGGGCGGAAGGGAGGTGGTGGGG AGGGTGGTTAGGAGAGCAAGGGAGGAGGTAGGGCGGGAGAGGTGGGCGGA GGGAGTCAACCCCGAATACCACCAGGAGTTGTTGGGGATGCTGGAAGAGC TGGCAAGGGAAGTGGAGGGGGAAAGGGGGGGGGAAGCAGGGAGGGAAAGG GTGGAGTTGTAG back to topprotein sequence of NO03G00530.1 >NO03G00530.1-protein ID=NO03G00530.1-protein|Name=NO03G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp MARSWPHQPCRPSCNTVLVVLSTLSSCSLLLLLLLLLPSPTSAATGENEE KQICKEENVFHATNEWQPIPRDASVPPGLHVKLDLSTGERLGKLLDADET AQAAATGAAGTAVSTSSTFIPLNQNKSQNGGGLLDSITIKNTPEEALDAA SGPLPTRRETMLKVISNLPPVERASMGVDALLATRPPDLSHPEEEEVFWQ KVEGLWEERQAMLQQAYDNMLKPAEELGRLIQVLREGAGEEGLLLQALIE LEDWLSDVDMAQDFYTLGGWPLLGWVLEKGKEGEGDSALTLLVEILREAA EGGVEGEEREHGEELLRKTVYALTSAARGNALVQSQLLKEGGLEVMGRLL ASSPSSSSSSSGQRALRLKLVAFAHDMILEARQGQEARSDDADLVPGGVG LAGGGGEGGREGGGSTGAQAVETEKVVEALGLLHGGCSGHGHWGGREVVG RVVRRAREEVGRERWAEGVNPEYHQELLGMLEELAREVEGERGGEAGRER VEL* back to topmRNA from alignment at chr3:163440..165110- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G00530.1 ID=NO03G00530.1|Name=NO03G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at chr3:163440..165110- (Nannochloropsis oceanica) ATGGCGCGCTCATGGCCACATCAACCCTGTCGTCCTTCTTGCAACACAGT
CCTCGTCGTCCTCTCCACCCTCTCCAGCTGCTCCCTCCTCCTCCTCCTCC
TCCTCCTCCTACCCTCCCCCACCAGCGCAGCAACGGGAGAGAATGAAGAA
AAGCAAATCTGCAAGGAAGAAAACGTCTTTCATGCTACCAACGAATGGCA
GCCCATCCCACGCGATGCATCGGTCCCTCCAGGGTTGCACGTGAAGCTGG
ATTTGTCGACGGGCGAGAGACTGGGCAAGCTCCTAGACGCAGACGAGACA
GCACAAGCAGCAGCAACAGGAGCTGCTGGAACTGCCGTCAGCACTTCCTC
AACTTTCATACCCCTCAACCAGAACAAGTCACAGAATGGAGGAGGGCTGC
TTGATAGCATTACCATCAAAAACACCCCGGAAGAGGCCTTGGACGCGGCC
AGTGGCCCCCTTCCCACTCGCCGGGAAACCATGCTCAAAGTCATCTCCAA
CCTCCCCCCTGTCGAGCGCGCCAGCATGGGTGTCGATGCCCTCCTTGCCA
CTCGTCCTCCTGACTTGTCGCACCCCGAAGAAGAAGAAGTGTTTTGGCAG
AAGGTGGAGGGTTTGTGGGAGGAAAGGCAAGCGATGCTGCAGCAGGCATA
TGACAACATGCTCAAGCCCGCGGAGGAACTGGGGAGGTTGATACAGGTGC
TGAGGGAGGGAGCTGGGGAGGAAGGGTTGCTACTACAAGCATTGATAGAA
TTGGAAGACTGGTTGTCGGATGTGGACATGGCTCAGGACTTTTATACCTT
GGGCGGGTGGCCTTTATTGGTGGGGAGGCTAGGGAGGGGGGAGGGAAGGA
GGTGAGGTGGAGAGCGGCGTGGGCGGTGGGGAATGCGGTGAAGAATGATA
GGGGATTTCAGGGATGGGTTTTGGAGAAAGGGAAGGAGGGAGAGGGGGAC
TCTGCGTTGACGCTTTTGGTGGAAATACTGCGGGAGGCGGCGGAGGGCGG
GGTGGAGGGGGAGGAGAGGGAGCACGGGGAGGAGTTGTTGAGGAAGACCG
TATATGCCTTGACATCGGCAGCAAGGGGAAACGCTTTGGTGCAATCCCAA
TTGCTCAAGGAGGGGGGGTTGGAGGTCATGGGTCGCCTCCTCGCCTCCTC
CCCTTCCTCGTCCTCGTCCTCGAGTGGACAGCGGGCTCTTCGATTGAAGC
TTGTTGCCTTTGCTCATGACATGATACTGGAGGCCAGACAAGGACAGGAA
GCCAGGTGGGAGGTAGAGGAGGCGCGACATCCTCCCTCCCCCCCCCCTCC
CTCCATGCCTCCCTTTTGGAAGGAGTGACGACGCCGACCTGGTGCCAGGG
GGCGTTGGTCTTGCTGGAGGAGGTGGCGAGGGAGGGAGGGAAGGGGGAGG
GAGTACAGGGGCGCAGGCGGTGGAGACGGAAAAGGTGGTGGAGGCCTTAG
GACTTTTGCACGGTGGGTGCAGTGGGCACGGGCATTGGGGCGGAAGGGAG
GTGGTGGGGAGGGTGGTTAGGAGAGCAAGGGAGGAGGTAGGGCGGGAGAG
GTGGGCGGAGGGAGTCAACCCCGAATACCACCAGGAGTTGTTGGGGATGC
TGGAAGAGCTGGCAAGGGAAGTGGAGGGGGAAAGGGGGGGGGAAGCAGGG
AGGGAAAGGGTGGAGTTGTAG back to topCoding sequence (CDS) from alignment at chr3:163440..165110- >NO03G00530.1 ID=NO03G00530.1|Name=NO03G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at chr3:163440..165110- (Nannochloropsis oceanica) ATGGCGCGCTCATGGCCACATCAACCCTGTCGTCCTTCTTGCAACACAGT CCTCGTCGTCCTCTCCACCCTCTCCAGCTGCTCCCTCCTCCTCCTCCTCC TCCTCCTCCTACCCTCCCCCACCAGCGCAGCAACGGGAGAGAATGAAGAA AAGCAAATCTGCAAGGAAGAAAACGTCTTTCATGCTACCAACGAATGGCA GCCCATCCCACGCGATGCATCGGTCCCTCCAGGGTTGCACGTGAAGCTGG ATTTGTCGACGGGCGAGAGACTGGGCAAGCTCCTAGACGCAGACGAGACA GCACAAGCAGCAGCAACAGGAGCTGCTGGAACTGCCGTCAGCACTTCCTC AACTTTCATACCCCTCAACCAGAACAAGTCACAGAATGGAGGAGGGCTGC TTGATAGCATTACCATCAAAAACACCCCGGAAGAGGCCTTGGACGCGGCC AGTGGCCCCCTTCCCACTCGCCGGGAAACCATGCTCAAAGTCATCTCCAA CCTCCCCCCTGTCGAGCGCGCCAGCATGGGTGTCGATGCCCTCCTTGCCA CTCGTCCTCCTGACTTGTCGCACCCCGAAGAAGAAGAAGTGTTTTGGCAG AAGGTGGAGGGTTTGTGGGAGGAAAGGCAAGCGATGCTGCAGCAGGCATA TGACAACATGCTCAAGCCCGCGGAGGAACTGGGGAGGTTGATACAGGTGC TGAGGGAGGGAGCTGGGGAGGAAGGGTTGCTACTACAAGCATTGATAGAA TTGGAAGACTGGTTGTCGGATGTGGACATGGCTCAGGACTTTTATACCTT GGGCGGGTGGCCTTTATTGGGATGGGTTTTGGAGAAAGGGAAGGAGGGAG AGGGGGACTCTGCGTTGACGCTTTTGGTGGAAATACTGCGGGAGGCGGCG GAGGGCGGGGTGGAGGGGGAGGAGAGGGAGCACGGGGAGGAGTTGTTGAG GAAGACCGTATATGCCTTGACATCGGCAGCAAGGGGAAACGCTTTGGTGC AATCCCAATTGCTCAAGGAGGGGGGGTTGGAGGTCATGGGTCGCCTCCTC GCCTCCTCCCCTTCCTCGTCCTCGTCCTCGAGTGGACAGCGGGCTCTTCG ATTGAAGCTTGTTGCCTTTGCTCATGACATGATACTGGAGGCCAGACAAG GACAGGAAGCCAGGAGTGACGACGCCGACCTGGTGCCAGGGGGCGTTGGT CTTGCTGGAGGAGGTGGCGAGGGAGGGAGGGAAGGGGGAGGGAGTACAGG GGCGCAGGCGGTGGAGACGGAAAAGGTGGTGGAGGCCTTAGGACTTTTGC ACGGTGGGTGCAGTGGGCACGGGCATTGGGGCGGAAGGGAGGTGGTGGGG AGGGTGGTTAGGAGAGCAAGGGAGGAGGTAGGGCGGGAGAGGTGGGCGGA GGGAGTCAACCCCGAATACCACCAGGAGTTGTTGGGGATGCTGGAAGAGC TGGCAAGGGAAGTGGAGGGGGAAAGGGGGGGGGAAGCAGGGAGGGAAAGG GTGGAGTTGTAG back to top
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