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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:124704..127712 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00390.2 vs.
Match: EWM29504.1 (hypothetical protein Naga_100601g2 [Nannochloropsis gaditana]) HSP 1 Score: 270.4 bits (690), Expect = 1.200e-68 Identity = 145/319 (45.45%), Postives = 199/319 (62.38%), Query Frame = 0
Query: 232 DPIQLKPQPKPVEHPNENDEIKRDRMRRQFAEEKARALAWPTPEDLLLTPSIDTESGVVVPF--PPSKGVIRKPIVAQPPLHRPRDEVEVEKILVFLSSSDRGQRVRHLWGHGDKMETIEVTLASLASWCERGFDVTLWFLAAWKVSEEDERIKKALQCERIGTSLEVRYWDDYPLNVDGYLSSKHRLALAEAKDDFDFFISIEDDMHLRPVMLDAFLQDSGRLAKAEKPYL-NRFFPGFVRIEHDPL-ADQQWAIWETDAADYEGIFLGGNAGWWGLVGGNRHQGMWMATREQVYHLEERCNSRFFGIRE-KTADWVE 546
+ ++ + QPK E END + ++ ++EKA LL P +P P + R PI +PPLHRP E V+KI++ +SS DRG+R+ LW GDK+ TI TL S+ CERGFD+T+WF+AAWK+S++ E I++AL C+R +++RYWD +P +V G+LSS+HRLA+A+ D++DFFISIEDD++L P M+DA++ SGRLA Y GF R EHD L D+ WA+WET A DY + L G AGWW V GN HQ MWMATREQ+Y+ E RC S F ++ + A+WVE
Sbjct: 143 EKVERQKQPKRNEQNEENDPA--NSIQTANSKEKAS----------LLGPFEAEGGNPAIPLLQPAGEKATRPPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWA-GDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPG-AGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVE 447
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G00390.2 ID=NO03G00390.2|Name=NO03G00390.2|organism=Nannochloropsis oceanica|type=mRNA|length=2772bp AACAAAAATTCAGTGCCCTTATGGAACCGCTGAATTCACCTCACGACCCC GTGTGCGGCAACGTCGGGGGCGGTCGACGAAGGCTACCCGAAGGCAGACA GTATGTTACAGCCCAATACATCCCTAAGATTCATGGGAGAGAGAGACGGC GGGGGGTCATACTGCAGCATGCGGCAAAGCTGGCGTTTGGCATCGTCATC AGTATAGCCTTGGCTAACTTCGCCTTGCGTCACTACTCAGCGCATGGGCC GATGGATTGGGGCATGGAACTGTCGGCGGTGGGGCCTTCTGTCGAGACGA TAGAGAAGATAAAAGCATTCTCTTTGACCAGCTTTCTGAAAGCGGGAAAA AGTGATCAAAATAGCGGCGACAATGCAGGGAACAAAATTGACGTTGAAAA TGAGATAGATACGGGGGGACAGAAAGTGGAAGAAGAGAAGAAAACCATGG AGAAAACGAAGAAGATAGCTATGGCAGCTTCCACTGAAATGCAAGACGCT CCTGGTGTAGACACACCTGACCCAGTGATTGGAAAGGCTGAAGAGGAAAA GTCCAGTACACTGGACGAGCATGTGAAAGAAAGAGAAAAGAAGGAAAATG AGGATGAAGAGAAGAAGAGGAGGGAGGACGAAGAGGAGGAGAAGTGGGAC GAAGAGAAGAAGGAAGAAGAGAAGAAGGAAGAAGAGGATGGTAATGATAT TGATGGTGATGGTGATCCGATTCAATTAAAGCCGCAGCCCAAGCCGGTCG AACACCCGAACGAGAACGATGAGATCAAGAGAGACCGCATGCGGCGACAG TTTGCCGAAGAGAAAGCTCGGGCTCTTGCCTGGCCTACCCCCGAGGACCT CCTCTTGACGCCAAGCATCGATACGGAGTCAGGCGTAGTGGTGCCTTTCC CGCCTTCAAAAGGTGTGATTCGCAAGCCCATCGTCGCTCAGCCACCCTTG CACCGGCCTCGGGATGAGGTGGAGGTGGAGAAGATCTTAGTCTTCCTCTC CTCCTCGGATCGGGGGCAACGAGTAAGACACCTGTGGGGCCACGGGGACA AGATGGAAACTATTGAAGTGACGTTGGCCTCCCTAGCATCATGGTGCGAG AGGGGTTTTGACGTCACCCTCTGGTTTCTGGCCGCGTGGAAGGTTTCCGA GGAGGACGAGCGGATCAAGAAGGCGCTCCAGTGTGAGCGAATCGGAACGT CCCTGGAGGTGAGGTATTGGGACGATTACCCCCTTAATGTAGACGGATAC CTCTCGAGCAAGCACCGCCTGGCCCTGGCGGAGGCCAAAGACGACTTCGA CTTCTTCATATCCATCGAGGACGATATGCACTTGCGTCCCGTCATGCTGG ATGCGTTCTTGCAGGATTCAGGGAGGCTGGCAAAGGCGGAAAAGCCGTAC CTCAACAGATTTTTCCCTGGGTTTGTGAGGATTGAGCATGACCCGTTGGC GGACCAGCAGTGGGCGATATGGGAGACGGACGCAGCTGATTACGAAGGGA TTTTTCTGGGTGGGAATGCGGGCTGGTGGGGGCTGGTGGGGGGAAACAGG CATCAGGGCATGTGGATGGCGACGAGGGAGCAGGTCTACCACCTGGAAGA GCGGTGTAATTCAAGATTTTTCGGAATCCGTGAAAAGACAGCCGATTGGG TGGAGGTAAGTCTTAAGCGACGGAGGGAGGGAGGGTAGGGATGGTGGAAA AGGCCATCGTAAACGGATGGGATTAATATGAGTGATGGTGTTTCTCACGC CATTCTATGCGACACACGTACCTGCACACACCTTGTGTATTGCTGCAACG ACACCATTACCAGTTCTGGAGCGGTGGACTGCAGCTTTGGATTGACTGCC GCGGCATCGAGAAGGTCTTGTCAATCAGCACCCTCGTCGAGGGCTCTTCA GTGTGGCACATGACTGACATCAAGCTGCATGATCGTGGGAAGGGCGTCAC GCCTCTGGAAGAGGTTGTAGGGAAGCTGGAGGGACAGAGGGAGGAGGGGG GGAGACGACACCGGTACGAGGAGAAAAGGGCGAGTTTGGTGATGGAGTAA TAGGGTAGGGATGATGGAGGGATGGTGAAGGGAATGGCGAGGCGAAGGGA GGCATGAAAGGAGGGTGGGCCATGCTTGTGCGACCTTACGAGGGAGGGAA GGAGGGAAGGAGGAAGGGAGGAAAGGGAGGAAGGAGGGGATGGGGGGATG TAGGTTAGATGATGAGTAATTTATAAATCTCTGGGGAGAAGGCCACGGCG GGAGCAGTGGATTAATGCATGAATGATATGAGGCGGACGTAAATAAAGGA TAAGGTGAATGTACATGGCATTCGGTTAGACACACACAACGCACACCGAT AATAAGGCTGCTGTAATATGTTGCGGTTAAGTTCAGAAAGAGGAACAATA CGAGCACCACGACCACTGCGAGAATCACCCTCTGCAGGCGACGAAGGACC TGCCAAAAGGAGCCTCTTTTTGCTTCTCTTGTCCCTGCTTTCTCTTCGCT GTCTTTCCAGCCGTCAGCCCCGTGTTTGATTCTTTGGTCATTTTTGTATT GTACTGGCATTCCATTGCTGCCGCCGCCGCCGCTGCTACTGCTGCTGCTG CAGCTGTTGTTTCCTCTATAGCACACAGATAGTTCATTTTTATTTACATT CCCAGTGCATCCGACTTCTCTGAACACTCCTCCTCCTCCTCCCCTTCCTT TCGATCGATTGACCTCTCAAAACCACATAAAACCAATACGTCCATTACCC CCCCCCTCTGTCTCCCTCCCCC back to topprotein sequence of NO03G00390.2 >NO03G00390.2-protein ID=NO03G00390.2-protein|Name=NO03G00390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp MEPLNSPHDPVCGNVGGGRRRLPEGRQYVTAQYIPKIHGRERRRGVILQH AAKLAFGIVISIALANFALRHYSAHGPMDWGMELSAVGPSVETIEKIKAF SLTSFLKAGKSDQNSGDNAGNKIDVENEIDTGGQKVEEEKKTMEKTKKIA MAASTEMQDAPGVDTPDPVIGKAEEEKSSTLDEHVKEREKKENEDEEKKR REDEEEEKWDEEKKEEEKKEEEDGNDIDGDGDPIQLKPQPKPVEHPNEND EIKRDRMRRQFAEEKARALAWPTPEDLLLTPSIDTESGVVVPFPPSKGVI RKPIVAQPPLHRPRDEVEVEKILVFLSSSDRGQRVRHLWGHGDKMETIEV TLASLASWCERGFDVTLWFLAAWKVSEEDERIKKALQCERIGTSLEVRYW DDYPLNVDGYLSSKHRLALAEAKDDFDFFISIEDDMHLRPVMLDAFLQDS GRLAKAEKPYLNRFFPGFVRIEHDPLADQQWAIWETDAADYEGIFLGGNA GWWGLVGGNRHQGMWMATREQVYHLEERCNSRFFGIREKTADWVEVSLKR RREGG* back to topmRNA from alignment at chr3:124704..127712- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G00390.2 ID=NO03G00390.2|Name=NO03G00390.2|organism=Nannochloropsis oceanica|type=mRNA|length=3009bp|location=Sequence derived from alignment at chr3:124704..127712- (Nannochloropsis oceanica) AACAAAAATTCAGTGCCCTTATGGAACCGCTGAATTCACCTCACGACCCC
GTGTGCGGCAACGTCGGGGGCGGTCGACGAAGGCTACCCGAAGGCAGACA
GTATGTTACAGCCCAATACATCCCTAAGATTCATGGGAGAGAGAGACGGC
GGGGGGTCATACTGCAGCATGCGGCAAAGCTGGCGTTTGGCATCGTCATC
AGTATAGCCTTGGCTAACTTCGCCTTGCGTCACTACTCAGCGCATGGGCC
GATGGATTGGGGCATGGAACTGTCGGCGGTGGGGCCTTCTGTCGAGACGA
TAGAGAAGATAAAAGCATTCTCTTTGACCAGCTTTCTGAAAGCGGGAAAA
AGTGATCAAAATAGCGGCGACAATGCAGGGAACAAAATTGACGTTGAAAA
TGAGATAGATACGGGGGGACAGAAAGTGGAAGAAGAGAAGAAAACCATGG
AGAAAACGAAGAAGATAGCTATGGCAGCTTCCACTGAAATGCAAGACGCT
CCTGGTGTAGACACACCTGACCCAGTGATTGGAAAGGCTGAAGAGGAAAA
GTCCAGTACACTGGACGAGCATGTGAAAGAAAGAGAAAAGAAGGAAAATG
AGGATGAAGAGAAGAAGAGGAGGGAGGACGAAGAGGAGGAGAAGTGGGAC
GAAGAGAAGAAGGAAGAAGAGAAGAAGGAAGAAGAGGATGGTAATGATAT
TGATGGTGATGGTGATCCGATTCAATTAAAGCCGCAGCCCAAGCCGGTCG
AACACCCGAACGAGAACGATGAGATCAAGAGAGACCGCATGCGGCGACAG
TTTGCCGAAGAGAAAGCTCGGGCTCTTGCCTGGCCTACCCCCGAGGACCT
CCTCTTGACGCCAAGCATCGATACGGAGTCAGGCGTAGTGGTGCCTTTCC
CGCCTTCAAAAGGTGTGATTCGCAAGCCCATCGTCGCTCAGCCACCCTTG
CACCGGCCTCGGGATGAGGTGGAGGTGGAGAAGATCTTAGTCTTCCTCTC
CTCCTCGGATCGGGGGCAACGAGTAAGACACCTGTGGGGCCACGGGGACA
AGATGGAAACTATTGAAGTGACGTTGGCCTCCCTAGCATCATGGTGCGAG
AGGGGTTTTGACGTCACCCTCTGGTTTCTGGCCGCGTGGAAGGTTTCCGA
GGAGGACGAGCGGATCAAGAAGGCGCTCCAGTGTGAGCGAATCGGAACGT
CCCTGGAGGTGAGGTATTGGGACGATTACCCCCTTAATGTAGACGGATAC
CTCTCGAGCAAGCACCGCCTGGCCCTGGCGGAGGCCAAAGACGACTTCGA
CTTCTTCATATCCATCGAGGACGATATGCACTTGCGTCCCGTCATGCTGG
ATGCGTTCTTGCAGGATTCAGGGAGGCTGGCAAAGGCGGAAAAGCCGTAC
CTCAACAGATTTTTCCCTGGGTTTGTGAGGATTGAGCATGACCCGTTGGC
GGACCAGCAGTGGGCGATATGGGAGACGGACGCAGCTGATTACGAAGGGA
TTTTTCTGGGTGGGAATGCGGGCTGGTGGGGGCTGGTGGGGGGAAACAGG
TGAGGATCGATGGGAGGGTGGATATGTGTGTGGGGGGGGGGGCGTTGGGT
ACTTTTCAGTTCATTTGTAGAGGGTCATGATTTTTATATCTACCTAACAG
GCATCAGGGCATGTGGATGGCGACGAGGGAGCAGGTCTACCACCTGGAAG
AGCGGTGTAATTCAAGATTTTTCGGAATCCGTGAAAAGACAGCCGATTGG
GTGGAGGTAAGTCTTAAGCGACGGAGGGAGGGAGGGTAGGGATGGTGGAA
AAGGCCATCGTAAACGGATGGGATTAATATGAGTGATGGTGTTTCTCACG
CCATTCTATGCGACACACGTACCTGCACACACCTTGTGTATTGCTGCAAC
GACACCATTACCAGTTCTGGAGCGGTGGACTGCAGGTAAGCTGAGGGAAG
CAAAGGAGGGAGGGAGGGCGGGCGGGCGGGCGGGCGGGAGGAAGTCACAA
GAGTCACTCACATCGTCTGTCTCCTATCCTATTTTCTCTCCCCCCGGGGG
ATATCCCTCCACAACAAATAGCTTTGGATTGACTGCCGCGGCATCGAGAA
GGTCTTGTCAATCAGCACCCTCGTCGAGGGCTCTTCAGTGTGGCACATGA
CTGACATCAAGCTGCATGATCGTGGGAAGGGCGTCACGCCTCTGGAAGAG
GTTGTAGGGAAGCTGGAGGGACAGAGGGAGGAGGGGGGGAGACGACACCG
GTACGAGGAGAAAAGGGCGAGTTTGGTGATGGAGTAATAGGGTAGGGATG
ATGGAGGGATGGTGAAGGGAATGGCGAGGCGAAGGGAGGCATGAAAGGAG
GGTGGGCCATGCTTGTGCGACCTTACGAGGGAGGGAAGGAGGGAAGGAGG
AAGGGAGGAAAGGGAGGAAGGAGGGGATGGGGGGATGTAGGTTAGATGAT
GAGTAATTTATAAATCTCTGGGGAGAAGGCCACGGCGGGAGCAGTGGATT
AATGCATGAATGATATGAGGCGGACGTAAATAAAGGATAAGGTGAATGTA
CATGGCATTCGGTTAGACACACACAACGCACACCGATAATAAGGCTGCTG
TAATATGTTGCGGTTAAGTTCAGAAAGAGGAACAATACGAGCACCACGAC
CACTGCGAGAATCACCCTCTGCAGGCGACGAAGGACCTGCCAAAAGGAGC
CTCTTTTTGCTTCTCTTGTCCCTGCTTTCTCTTCGCTGTCTTTCCAGCCG
TCAGCCCCGTGTTTGATTCTTTGGTCATTTTTGTATTGTACTGGCATTCC
ATTGCTGCCGCCGCCGCCGCTGCTACTGCTGCTGCTGCAGCTGTTGTTTC
CTCTATAGCACACAGATAGTTCATTTTTATTTACATTCCCAGTGCATCCG
ACTTCTCTGAACACTCCTCCTCCTCCTCCCCTTCCTTTCGATCGATTGAC
CTCTCAAAACCACATAAAACCAATACGTCCATTACCCCCCCCCTCTGTCT
CCCTCCCCC back to topCoding sequence (CDS) from alignment at chr3:124704..127712- >NO03G00390.2 ID=NO03G00390.2|Name=NO03G00390.2|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr3:124704..127712- (Nannochloropsis oceanica) ATGGAACCGCTGAATTCACCTCACGACCCCGTGTGCGGCAACGTCGGGGG CGGTCGACGAAGGCTACCCGAAGGCAGACAGTATGTTACAGCCCAATACA TCCCTAAGATTCATGGGAGAGAGAGACGGCGGGGGGTCATACTGCAGCAT GCGGCAAAGCTGGCGTTTGGCATCGTCATCAGTATAGCCTTGGCTAACTT CGCCTTGCGTCACTACTCAGCGCATGGGCCGATGGATTGGGGCATGGAAC TGTCGGCGGTGGGGCCTTCTGTCGAGACGATAGAGAAGATAAAAGCATTC TCTTTGACCAGCTTTCTGAAAGCGGGAAAAAGTGATCAAAATAGCGGCGA CAATGCAGGGAACAAAATTGACGTTGAAAATGAGATAGATACGGGGGGAC AGAAAGTGGAAGAAGAGAAGAAAACCATGGAGAAAACGAAGAAGATAGCT ATGGCAGCTTCCACTGAAATGCAAGACGCTCCTGGTGTAGACACACCTGA CCCAGTGATTGGAAAGGCTGAAGAGGAAAAGTCCAGTACACTGGACGAGC ATGTGAAAGAAAGAGAAAAGAAGGAAAATGAGGATGAAGAGAAGAAGAGG AGGGAGGACGAAGAGGAGGAGAAGTGGGACGAAGAGAAGAAGGAAGAAGA GAAGAAGGAAGAAGAGGATGGTAATGATATTGATGGTGATGGTGATCCGA TTCAATTAAAGCCGCAGCCCAAGCCGGTCGAACACCCGAACGAGAACGAT GAGATCAAGAGAGACCGCATGCGGCGACAGTTTGCCGAAGAGAAAGCTCG GGCTCTTGCCTGGCCTACCCCCGAGGACCTCCTCTTGACGCCAAGCATCG ATACGGAGTCAGGCGTAGTGGTGCCTTTCCCGCCTTCAAAAGGTGTGATT CGCAAGCCCATCGTCGCTCAGCCACCCTTGCACCGGCCTCGGGATGAGGT GGAGGTGGAGAAGATCTTAGTCTTCCTCTCCTCCTCGGATCGGGGGCAAC GAGTAAGACACCTGTGGGGCCACGGGGACAAGATGGAAACTATTGAAGTG ACGTTGGCCTCCCTAGCATCATGGTGCGAGAGGGGTTTTGACGTCACCCT CTGGTTTCTGGCCGCGTGGAAGGTTTCCGAGGAGGACGAGCGGATCAAGA AGGCGCTCCAGTGTGAGCGAATCGGAACGTCCCTGGAGGTGAGGTATTGG GACGATTACCCCCTTAATGTAGACGGATACCTCTCGAGCAAGCACCGCCT GGCCCTGGCGGAGGCCAAAGACGACTTCGACTTCTTCATATCCATCGAGG ACGATATGCACTTGCGTCCCGTCATGCTGGATGCGTTCTTGCAGGATTCA GGGAGGCTGGCAAAGGCGGAAAAGCCGTACCTCAACAGATTTTTCCCTGG GTTTGTGAGGATTGAGCATGACCCGTTGGCGGACCAGCAGTGGGCGATAT GGGAGACGGACGCAGCTGATTACGAAGGGATTTTTCTGGGTGGGAATGCG GGCTGGTGGGGGCTGGTGGGGGGAAACAGGCATCAGGGCATGTGGATGGC GACGAGGGAGCAGGTCTACCACCTGGAAGAGCGGTGTAATTCAAGATTTT TCGGAATCCGTGAAAAGACAGCCGATTGGGTGGAGGTAAGTCTTAAGCGA CGGAGGGAGGGAGGGTAG back to top
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