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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1660789..1665021 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G06190.2 vs.
Match: GAY01995.1 (glutamate decarboxylase [Pythium insidiosum]) HSP 1 Score: 516.2 bits (1328), Expect = 1.000e-142 Identity = 256/425 (60.24%), Postives = 310/425 (72.94%), Query Frame = 0
Query: 6 ERLVDSSSSQTPPHPLNRQSTIS-----QPSEVTYGYSYGYAYCARTMRKSIPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLVAFALKPNLDILYTVFEIQDKLRERG 426
+R + + + H RQ ++S +E YG+ CA S+P P P+PA V LI DE+ LDG P+MNLA+FVTTYME E ++LM++ RKNYID+D+YPQT EI RCV +LS L+HAPL+P E TGT +GSSEAIMLA L MK WR++R AQG P+D PN+V GSNVQVCW K +YFE+E R ADVSPDCLVLTAERA+PL+DENTIGVC ILGSTFNGE+EDV+AIH+M+ +N GW +PIHVDAASGGFIAPFI P+L WDFRLP VKSIN SGHKFGLVYAG+GW +RE+ L +L F V+YLGG Q S TLNFS+GA +V QYYNFLR G EGY+ +M +MENA YLR AL+ATG IVD++HMPLVAFAL + YT F+IQDKL+ RG
Sbjct: 544 QREAEPDAEPSSVHKPRRQPSLSYLLEQSDAEPLYGHPL---MCA-----SLPTETFPRRPVPARVAHQLIKDELALDGNPKMNLASFVTTYMEPEADDLMIEGLRKNYIDLDQYPQTAEIHNRCVQILSNLYHAPLQPGERGTGTGCIGSSEAIMLAGLAMKRKWRERRKAQGLPYDNPNMVFGSNVQVCWHKMCKYFEIEIREADVSPDCLVLTAERARPLLDENTIGVCAILGSTFNGEYEDVKAIHEMVTDVNNANGWAIPIHVDAASGGFIAPFIMPELEWDFRLPNVKSINVSGHKFGLVYAGMGWALWREREDLPDDLVFHVNYLGGDQQSFTLNFSKGAGNVVAQYYNFLRFGFEGYQRIMETSMENAAYLRSALVATGHFRIVDRQHMPLVAFALIDS--SRYTCFDIQDKLKSRG 958
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G06190.2 ID=NO02G06190.2|Name=NO02G06190.2|organism=Nannochloropsis oceanica|type=mRNA|length=2282bp CCTCAGAGTCGACACACAACGCTGTCAATAGCCGAGCGGACAACATAATA AGCCAAGCCATCATCAGCCTCTTCCCGACTCTACAGCATTATGGCTTCCC TCGACGAGCGTCTGGTCGACTCCTCCTCCTCACAAACGCCGCCTCACCCC TTAAATCGCCAGTCTACAATTTCCCAACCTTCAGAGGTGACCTATGGCTA CAGCTACGGCTATGCCTACTGCGCGCGCACCATGCGTAAGAGTATCCCTA AGCATGAGTTGCCCGACACGCCCTTGCCTGCCAATGTAGTGAAGACTTTG ATCGACGATGAAATGATCCTGGATGGCACGCCCAGGATGAACCTCGCTAC GTTTGTCACGACCTACATGGAGAAGGAGTGCGAGGAGCTGATGATGGACG CAGCCAGGAAAAATTATATTGATATCGACGAGTACCCGCAGACATACGAG ATCCAGAAGCGCTGCGTGAACATGCTTTCGCGTCTCTGGCACGCCCCCTT GGAGCCGGAGGAAGATGCAACCGGCACGTCCACCGTGGGGTCGTCGGAGG CCATCATGCTGGCCGTTTTGAACATGAAGTGGGCCTGGCGGAAGAAGCGT ATCGCCCAAGGCAAGCCCCATGACAAGCCGAATTTGGTCTGCGGCTCCAA TGTCCAAGTCTGCTGGGAGAAAGCCATGCGTTACTTCGAGGTCGAGGAGC GACTGGCCGACGTCTCGCCGGACTGCCTGGTGCTGACGGCAGAAAGAGCC AAGCCGCTGATTGACGAAAACACAATCGGCGTGTGTCCCATACTTGGCAG CACCTTCAATGGAGAGTTCGAAGACGTGCAGGCGATCCATGACATGCTGG AGGCGCTGAATGCGGAGACGGGGTGGGACGTGCCCATCCATGTGGACGCG GCGAGTGGGGGCTTCATTGCGCCGTTCATCAATCCGGACTTGGTGTGGGA CTTCCGGCTGCCGCTGGTCAAGAGCATCAACGCCTCGGGGCACAAATTTG GGCTCGTGTATGCCGGCGTGGGCTGGCTGTGCTTTCGGGAGAAACCGGCC CTGCAGCAGGAGCTGACTTTTACCGTCGACTACCTGGGAGGGTCCCAGTC GTCCATGACGCTTAATTTCTCCCGGGGGGCATCGCAGCTGGTGGGCCAGT ACTACAACTTCCTGAGGCTCGGCAAGGAGGGCTATCGCGAGGTGATGACC AATGCCATGGAGAACGCTCGCTACCTCCGAGAGGCGCTCTTGGCGACGGG CAAGGTGGAGATCGTGGACAAGGAGCACATGCCTCTGGTCGCCTTCGCGC TCAAGCCTAACCTGGACATCCTCTACACGGTCTTCGAGATCCAGGACAAG CTGCGGGAGCGCGGGTAGGAAGGAATAGAGGGAGCGAGGGATTGGAAGAG GACAACGATAAAGGAATGAAAGTGAAAACGGAAATTCACACACAAATACA CACATTCATACATATTTTGAGAATTCACGCCTACAGGTGCTCTACATATT TATCCATGTACACATTTACTCACACACATACACACATATATATTCACTCA TTCATTTACATATGTATGTACATTCATCTATACACCAGCTGGATTATTCC CGCCTACCGCTGCTCCAAGGGTGCCGAGAAGCTGTGCATCATGCGCGTGG TGGTGAAGGAGAACTTCTCCCGAGATCTGGCCGAGCTGTTGGTGGACGAC TTTCAGAAGGCGATGGCCTACTTGGACAAGGATCACAAGGCACAGCAGGA CCTCATCACAAAGGCGCGGGAGATGGGGGCAAGCCAGGCCCACCACATGG CGGACATAGTGGAGACGCTCAGGGGGAGAGCGAGGCGGGCCCGCAACATC TTCCACGACGACGCGCACCGCGCGGAAGGGAAGGCGACGAAGGGGGTTTG TTAAACAAAACAGGATATGAGGGGGTTCGGGTCGGGGGTCGACATGAAGA AACTTGGAAGATGTTTGGTGTGAGTTTTTCGCGGGGGATTGAAAGGAGGT ATTGAAAGACACAAAGACATGGAGTTAGGAGGTATTGAAAGACACAAAGA CATGGAGTTAGAGGAGAAATGACATGCATAACAATTATAGTGAAATTAGG TGCCTGGTGACAGTGGCAATGAAGGCCCTTGTGGAGGGAGTACAGAAAAT ACGTATCCATGCGACTAGTTCCCTGCATGGCGGGAAAAAAGGAAAAGATG AAAGGCAGGGCAAGCCACAAAATCAAATGAAGACGTAGTACGACCAACTC CAGATCGCTCTCGGGTCTTCAGTTGCAGGCCT back to topprotein sequence of NO02G06190.2 >NO02G06190.2-protein ID=NO02G06190.2-protein|Name=NO02G06190.2|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp MASLDERLVDSSSSQTPPHPLNRQSTISQPSEVTYGYSYGYAYCARTMRK SIPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEEL MMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVG SSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFE VEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIH DMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASG HKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQL VGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLV AFALKPNLDILYTVFEIQDKLRERG* back to topmRNA from alignment at chr2:1660789..1665021- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G06190.2 ID=NO02G06190.2|Name=NO02G06190.2|organism=Nannochloropsis oceanica|type=mRNA|length=4233bp|location=Sequence derived from alignment at chr2:1660789..1665021- (Nannochloropsis oceanica) CCTCAGAGTCGACACACAACGCTGTCAATAGCCGAGCGGACAACATAATA
AGCCAAGCCATCATCAGCCTCTTCCCGACTCTACAGCATTATGGCTTCCC
TCGACGAGCGTCTGGTCGACTCCTCCTCCTCACAAACGCCGCCTCACCCC
TTAAATCGCCAGTCTACAATTTCCCAACCTTCAGAGGTGACCTATGGCTA
CAGGTAGGAAGAACAGAGGGAGGAGTACTTGGAGGAGGTAAGTGGGTTAG
ATGAATGATGTCGGGAAATTGACCATATCTCCCACTCTTCTTGCCTACTG
ATAGCTACGGCTATGCCTACTGCGCGCGCACCATGCGTAAGAGTATCCCT
AAGCATGAGTTGCCCGACACGCCCTTGCCTGCCAATGTAGTGAAGGTAAG
GAGGACGAGCAGGAGGCACAGCCATAAGACGCTGACCCAACCATTGGCGG
GTTTTCTTCACGTCATTCGTTTGCTCACTTGTTTGTTTGTTTCTCCCCAT
CCCCACCTCTTCTTGCCACCTTACTCCGTATAGACTTTGATCGACGATGA
AATGATCCTGGATGGCACGCCCAGGATGAACCTCGCTACGTTTGTCACGA
CCTACATGGAGAAGGAGTGCGAGGAGCTGATGATGGACGCAGCCAGGAAA
AATTATATTGGTGGGTACCACGGGAGGCAGTGAAATGGAAGGGAGGGAAG
AAAGGAAATGACGAGGGTAAAGATGGGGAAGTGGCGAACCAGACATAAGC
CTACATGCTCCCTGTGATTGACGGGACCCTTCACACTATGGTTGATGACG
CCGCAGATATCGACGAGTACCCGCAGACATACGAGATCCAGAAGCGCTGC
GTGAACATGCTTTCGCGTCTCTGGCACGCCCCCTTGGAGCCGGAGGAAGG
TAAGGAGGGAGGGCAGGGACGGGAGACGAGAGGCGAGAGACATAAAGAGA
GAGGGGTTGAGGGCCAAGAGAAATGTCAAATCCTGCTAGAGTCCTAGGCT
ACTGGCCAAGCACCTCCTTGTACTCTGGGTAACTCTCTCATCATGAACCA
CCATCTTCTTTTTCTCCTTACTTTCACCCCACCAGATGCAACCGGCACGT
CCACCGTGGGGTCGTCGGAGGCCATCATGCTGGCCGTTTTGAACATGAAG
TGGGCCTGGCGGAAGAAGCGTATCGCCCAAGGCAAGCCCCATGACAAGCC
GAATTTGGTGAGGAGGAGGGAAAGGGGAAAGAGGAATGGAGGGAGGATAG
GATTAAGCTTCATCGTCTCACCCATGGTCTTCTCCGTCAACGTCCTCCTT
TCCACAAGGTCTGCGGCTCCAATGTCCAAGTCTGCTGGGAGAAAGGTAAG
GAGCGAGAGGATTGGGATGTACATCTGGCCCTTTAAGGCATCTTGGTTTG
ACTCATCTTCTTTCCCTCTCCCCTCCCTTCCTCCCTCCTTCCTCCCTCCC
TATAGCCATGCGTTACTTCGAGGTCGAGGAGCGACTGGCCGACGTCTCGC
CGGACTGCCTGGTGCTGACGGCAGAAAGAGCCAAGCCGCTGATTGACGAA
AACACAATCGGCGTGTGTCCCATACTTGGCAGCACCTTCAATGGAGAGTT
CGAAGACGTGCAGGGTAGGGCGACGGAGGGCGAGGGGGAGGGATAGGGGG
AGGGGACGGAAAAGACCAACAAGTTTGGCGCCATTTTTGCACTCATGAAT
GTAATTTTATCTATAAAACCTCACTTTACAGCGATCCATGACATGCTGGA
GGCGCTGAATGCGGAGACGGGGTGGGACGTGCCCATCCATGTGGACGCGG
CGAGTGGGGGCTTCATTGGTAGGTGACCCGTAGGGAGTATGTGGAAAGTC
TGTGGAGAGTCTGTGGGGAGTCTGTTGTGAGTCGATCAGGCGGGGATGTA
GAGGAGGGAGGGTTGTAGAGGAGGAGCAGGGAGGCAGTCAGTCGCCTCAG
GCCACTGGTGCTGACTCTGGCATTGATGGCCTACACACACAGCGCCCTTC
CCTGACCCGCCCTGACACTCACACGTACAGCGCCGTTCATCAATCCGGAC
TTGGTGTGGGACTTCCGGCTGCCGCTGGTCAAGAGCATCAACGCCTCGGG
GCACAAATTTGGGTGCGTAGCGGGGGAGAGAGGGAAGGGGGGGCGGGAAG
GAAGGGGGGAAGAGTGAAGAAGATTGTGTGATGTCAGGGAGGCCTCATGT
GTCCATCTTATTCCCATCCCGCCTTCGTCAGGCTCGTGTATGCCGGCGTG
GGCTGGCTGTGCTTTCGGGAGAAACCGGCCCTGCAGCAGGAGCTGACTTT
TACCGTCGACTACCTGGGAGGGTCCCAGTCGTCCATGTAAGGGAATAGGG
AGTGAGGGACGGGTGGTGAGGGATGGGCAGTAAAGGATGGACAGTGAGGA
AAAGGGAAAGGGTAGATGGATGGGGGCATGGGCTGTGTGTCAAGAAAGGG
AGGCAGGCCGGTGAGGTCCGGGGCTGTTTCTGCCTCCGCCTCAGCAGGGA
CATTAGCCGGTACCAAGTCATTCGATCTTTTAATGTCGCATTCGCCATGG
CTTGGCGCGCATTGACAGGACGCTTAATTTCTCCCGGGGGGCATCGCAGC
TGGTGGGCCAGTACTAGTAAGTGGCGGGGAGGGACAGAGACAAAAAGGAA
GACGAGATCTTCCACTTTCTTCTTTTCGTTCCGAGCCACAATCAACACAT
TCCTTCCTTCCCCCTTCCCCACTTTATCTTGATTCCGTCCTCCTTTCCTC
CCTCACACCCTCTCTCAGCAACTTCCTGAGGCTCGGCAAGGAGGGCTATC
GCGAGGTGATGACCAATGCCATGGAGAACGCTCGCTACCTCCGAGAGGCG
CTCTTGGCGACGGGCAAGGTAAGGGAGGGAGGAGGGCGGAAGGGAGACAG
GAGAGAAGGCTGCGTGTTGAAAAGATGGCATATGAATCAAGGGTGCAAGC
AACCAATAAGGCTGGTTATCCCACTGCACTACACACCGCAGGTGGAGATC
GTGGACAAGGAGCACATGCCTCTGGTCGCCTTCGCGCTCAAGCCTAACCT
GGACATCCTCTACACGGTCTTCGAGATCCAGGACAAGCTGCGGGAGCGCG
GGTAGGAAGGAATAGAGGGAGCGAGGGATTGGAAGAGGACAACGATAAAG
GAATGAAAGTGAAAACGGAAATTCACACACAAATACACACATTCATACAT
ATTTTGAGAATTCACGCCTACAGGTGCTCTACATATTTATCCATGTACAC
ATTTACTCACACACATACACACATATATATTCACTCATTCATTTACATAT
GTATGTACATTCATCTATACACCAGCTGGATTATTCCCGCCTACCGCTGC
TCCAAGGGTGCCGAGAAGCTGTGCATCATGCGCGTGGTAAGGTGCCGGTG
CGAGGGAGGGAAGCAGAGAGGAAAGTATGTGTGAGTTGCTCACACATCGC
CACCTTTCATACATGATTGTTCCTCATAGGTGGTGAAGGAGAACTTCTCC
CGAGATCTGGCCGAGCTGTTGGTGGACGACTTTCAGAAGGCGATGGCCTA
CTTGGACAAGGATCACAAGGCACAGCAGGTTGGAGAGATAAAACGAGGGG
GGAAGGTCTATCGCGATCTCAACACTCCGTTCGATTTATTCACACCATGT
TGCACACTCTGTACACCCTCTACCCTCTACTCTCTTCTCCATCAACCAGG
ACCTCATCACAAAGGCGCGGGAGATGGGGGCAAGCCAGGCCCACCACATG
GCGGACATAGTGGAGACGCTCAGGGGGAGAGCGAGGCGGGCCCGCAACAT
CTTCCACGACGACGCGCACCGCGCGGAAGGGAAGGCGACGAAGGGGGTTT
GTTAAACAAAACAGGATATGAGGGGGTTCGGGTCGGGGGTCGACATGAAG
AAACTTGGAAGATGTTTGGTGTGAGTTTTTCGCGGGGGATTGAAAGGAGG
TATTGAAAGACACAAAGACATGGAGTTAGGAGGTATTGAAAGACACAAAG
ACATGGAGTTAGAGGAGAAATGACATGCATAACAATTATAGTGAAATTAG
GTGCCTGGTGACAGTGGCAATGAAGGCCCTTGTGGAGGGAGTACAGAAAA
TACGTATCCATGCGACTAGTTCCCTGCATGGCGGGAAAAAAGGAAAAGAT
GAAAGGCAGGGCAAGCCACAAAATCAAATGAAGACGTAGTACGACCAACT
CCAGATCGCTCTCGGGTCTTCAGTTGCAGGCCT back to topCoding sequence (CDS) from alignment at chr2:1660789..1665021- >NO02G06190.2 ID=NO02G06190.2|Name=NO02G06190.2|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at chr2:1660789..1665021- (Nannochloropsis oceanica) ATGGCTTCCCTCGACGAGCGTCTGGTCGACTCCTCCTCCTCACAAACGCC GCCTCACCCCTTAAATCGCCAGTCTACAATTTCCCAACCTTCAGAGGTGA CCTATGGCTACAGCTACGGCTATGCCTACTGCGCGCGCACCATGCGTAAG AGTATCCCTAAGCATGAGTTGCCCGACACGCCCTTGCCTGCCAATGTAGT GAAGACTTTGATCGACGATGAAATGATCCTGGATGGCACGCCCAGGATGA ACCTCGCTACGTTTGTCACGACCTACATGGAGAAGGAGTGCGAGGAGCTG ATGATGGACGCAGCCAGGAAAAATTATATTGATATCGACGAGTACCCGCA GACATACGAGATCCAGAAGCGCTGCGTGAACATGCTTTCGCGTCTCTGGC ACGCCCCCTTGGAGCCGGAGGAAGATGCAACCGGCACGTCCACCGTGGGG TCGTCGGAGGCCATCATGCTGGCCGTTTTGAACATGAAGTGGGCCTGGCG GAAGAAGCGTATCGCCCAAGGCAAGCCCCATGACAAGCCGAATTTGGTCT GCGGCTCCAATGTCCAAGTCTGCTGGGAGAAAGCCATGCGTTACTTCGAG GTCGAGGAGCGACTGGCCGACGTCTCGCCGGACTGCCTGGTGCTGACGGC AGAAAGAGCCAAGCCGCTGATTGACGAAAACACAATCGGCGTGTGTCCCA TACTTGGCAGCACCTTCAATGGAGAGTTCGAAGACGTGCAGGCGATCCAT GACATGCTGGAGGCGCTGAATGCGGAGACGGGGTGGGACGTGCCCATCCA TGTGGACGCGGCGAGTGGGGGCTTCATTGCGCCGTTCATCAATCCGGACT TGGTGTGGGACTTCCGGCTGCCGCTGGTCAAGAGCATCAACGCCTCGGGG CACAAATTTGGGCTCGTGTATGCCGGCGTGGGCTGGCTGTGCTTTCGGGA GAAACCGGCCCTGCAGCAGGAGCTGACTTTTACCGTCGACTACCTGGGAG GGTCCCAGTCGTCCATGACGCTTAATTTCTCCCGGGGGGCATCGCAGCTG GTGGGCCAGTACTACAACTTCCTGAGGCTCGGCAAGGAGGGCTATCGCGA GGTGATGACCAATGCCATGGAGAACGCTCGCTACCTCCGAGAGGCGCTCT TGGCGACGGGCAAGGTGGAGATCGTGGACAAGGAGCACATGCCTCTGGTC GCCTTCGCGCTCAAGCCTAACCTGGACATCCTCTACACGGTCTTCGAGAT CCAGGACAAGCTGCGGGAGCGCGGGTAG back to top
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