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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1364464..1368417 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05090.1 vs.
Match: EWM30176.1 (protein of unknown function DUF1084 [Nannochloropsis gaditana]) HSP 1 Score: 548.5 bits (1412), Expect = 1.700e-152 Identity = 301/379 (79.42%), Postives = 330/379 (87.07%), Query Frame = 0
Query: 1 MPETVAEKAQDLVMACLFSIIAIVALVKCRRVIVLEGAETAIKTFYFLIFGAAILRAIWFFIPSDVLEPSYAPAEVWAFQTPNWEGTLISEILLSGGSLCLFAIFVLIIIYWADLLKKVFKPVRKHEPMTTFLTIMGCLAAFEIANFSLFIAGIYSSQVMTLLDSIMLAIVSMVCVVEITIFSHRFRTVLTTLGAINQVPTDSQVRTIVWITVFGNVFFVLRAAIEVFLAATFVALWKQGKPLSSLATPRNHFWDIYVLVKHTLELLILFLMLWTLQSRRAGHHHHGTSQQRL--PQG---GSALRSSSAAGGGGGGGGGGGRGVASGSGGSYLSMASTVSIGSKLPNRREYTEVKDLE---GGEGGGGSAQPGRLSNG 372
MPETVAEK QDLVMACLF++IA+VALVKCRRVI+LEGAETAIKTFYFLIFGAA LRA+WFFIPSDVLEPSYAPAEVWAFQTP+W GTL+SEILLSGG+LCLFAIFVLIIIYWADLLKKVFKPVRKHEPMTTFL+IMG LAAFE+ANF+LF+AGIYSSQVMTLLDSIMLA+VSM CVVEI+IFSHRFRTVLTTLGAINQVPTDSQVRTI+WITVFGNVFFVLRA +E+FLAATF+ALW+ KPLSSLATPRNHFWD+YVL+KH+LEL+ILFLML+TLQSRR HHHH + PQG GS+LR SAAGGGGG SGSG SYLSMAST G+K PNR EYTEVKDL+ GG G G PG LS+G
Sbjct: 1 MPETVAEKVQDLVMACLFTLIAVVALVKCRRVIILEGAETAIKTFYFLIFGAAALRAVWFFIPSDVLEPSYAPAEVWAFQTPHWAGTLVSEILLSGGTLCLFAIFVLIIIYWADLLKKVFKPVRKHEPMTTFLSIMGSLAAFEVANFALFLAGIYSSQVMTLLDSIMLALVSMACVVEISIFSHRFRTVLTTLGAINQVPTDSQVRTIIWITVFGNVFFVLRAMVELFLAATFIALWRAHKPLSSLATPRNHFWDVYVLIKHSLELMILFLMLYTLQSRRTAHHHHVPPAHPVSHPQGIGAGSSLR--SAAGGGGG----------SGSGASYLSMAST---GNKPPNRSEYTEVKDLDAARGGRAGNGGRAPGFLSSG 364
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05090.1 ID=NO02G05090.1|Name=NO02G05090.1|organism=Nannochloropsis oceanica|type=mRNA|length=3668bp TGATTTTTTCCCGTTCGTTTGTGCATTTTACTGTCGTATCTCAGTCTTGT GACGTTCTCCATCACGCGGCTCTTTGAAACTCAGGGTTCGGAGCCTCCGT AGTCGGAGACTTCCAGACTTTAACTCTCCTTGACTAGATTATTCGGAAAG AGCAAATATTTCGGCGATTCTCTATTGTTGTGTCCTCGTGGGCTTGGCAA GCAGTCACGACTTTCTGGTGTCGCTGGATGTGAAAGAGTGGGCGCTTTGA AATTTCAGTGTATAAGGAAGAGGCATGCTGACATTAATTCCTTTTCTTGA CCTGGCCATCTTCTTCCTTTTAATGCTATGCCTCTCCTCCCTGGAATTTT CTTAGCTTAGGCGGATACTCAATCACTTGGAGTCACGGTAGCAAGCTTCA TATTCTGCAACAATTTGTCTTATATAGTCTTAGGAGGAAACGGAGATGAG GGACAACGAGGGAACCTGGCTACGGTTTTGATTGTGCACGTACGGTATGA TTCTGGTCAAAAGCAAGGTACCCGGCGATTGCAACGCCAAAATCGGTCGT CGTCATGAGCATACCAGCATACTTACTGCTTCACGCACTCTGCACCCATG CGCGCACAGGCAAACCTACGCGGCAGGCCAGGGGTATGTCCGGGGGGAAG CGGTGGTACGGCCGCAAGATTTGATTTCACCACAAATAAATGCACATGCA GTATTCGCATCTCATCGACGACAGTGCGTGCTTCCGTCATTCAATAAGCT CTCTCTCATACTTTATACGTATACATAACCAAAACCAACCCTTTCCACAG GCAGAAATCTTGCTGCTGGTCAAATCAAGCGCCTGTTGGAGTGTCTATTT CGCCGCGAGCTCGTGGGCGTTCGGGAAAAGGCCTTCCAGTCCTCTCCTTC CCAGCAGGCGTCGTTTGTTCTACGCCCTTGCCCTCCATAAACCATGCCTG AGACAGTGGCCGAAAAGGCACAGGACCTAGTGATGGCCTGCCTCTTCTCT ATTATTGCCATAGTTGCCCTCGTAAAATGCCGCCGGGTCATTGTCTTGGA AGGCGCCGAGACAGCAATCAAAACCTTCTATTTCCTCATCTTCGGCGCTG CCATCTTGCGGGCCATATGGTTTTTCATCCCTTCGGACGTCCTGGAGCCC TCCTATGCTCCTGCGGAAGTGTGGGCATTTCAAACCCCCAACTGGGAAGG CACGCTTATCTCCGAGATACTCCTCTCGGGTGGCTCCCTCTGCCTATTCG CCATCTTCGTTCTCATCATTATTTATTGGGCCGATTTGTTGAAGAAAGTC TTTAAGCCTGTGCGAAAACACGAGCCGATGACCACCTTCCTGACCATTAT GGGCTGTCTCGCGGCCTTTGAAATCGCAAATTTCTCCCTATTTATCGCCG GCATCTACTCCTCACAAGTGATGACTCTTCTAGACTCCATCATGCTGGCC ATCGTGTCCATGGTCTGCGTCGTGGAAATCACCATCTTCTCTCACCGCTT TCGCACCGTCCTCACTACCTTGGGCGCAATCAATCAAGTCCCCACCGACT CCCAAGTGCGGACCATAGTTTGGATAACCGTTTTCGGTAACGTTTTCTTC GTTCTACGGGCAGCTATCGAGGTCTTCCTCGCCGCCACCTTCGTCGCACT CTGGAAGCAGGGGAAACCGTTGAGCTCGCTCGCTACCCCCCGGAACCATT TCTGGGACATATATGTCCTCGTTAAGCATACCCTGGAGCTGCTCATCTTG TTTCTGATGCTGTGGACCCTTCAATCACGCCGCGCGGGCCATCACCACCA TGGTACCAGTCAGCAGCGGCTGCCGCAGGGAGGAAGTGCTTTGAGAAGTA GTAGTGCTGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGA GTGGCGTCAGGCTCGGGTGGGTCGTATTTATCGATGGCCTCGACAGTCTC GATTGGGAGCAAGCTTCCGAACAGAAGAGAGTACACGGAAGTGAAAGACC TGGAAGGAGGGGAAGGAGGAGGGGGGAGTGCACAGCCGGGGAGGTTGTCG AATGGGACTAGCAAGAAGGCAGTGGCAGCGGCGGCGGAGGAGAGGGGTCA TCAGAGGAGCGGTAGTGATGGTAGGAGATGAGAAGGAGAGAGGGAGGGGG GTAGGTGAGGGGGAGAGGGCGCATTTTGTATTGGTAGTTAAATGAGGGAA ATACAAATCGAAACCGCATGGCCTCAAATTCCTTAGCAACATTCCAGTCT CACAATAGCATTTATGTGCCGGACCTGTACGTGTGTGTGTGTGTGTGTGT ATGCGTGTTTGCTTACGAGAGAAGGGCATAGAGCGACAGGAAGAGAAGAA GAGAGAGTGCAGGAGCGAGCAAGCGAGAAACACCTTGAAAACGTGTATAT AGGGAAAGGTCGGATAATTTGAACGAGCACCAGGGAAGAGGGGGATGTGT GCTGAAGAAAGTATGCCTTTAAACAAAGGGAAATAGAACCTGAATTTGAT AAAAAGGAAAAGAGAGGGGGAAGTCGACCTTTGTGTCGCATTGTGGATGT GGTGGGCAAGGTAATTGGACAGGTGCGAGGAAGCATTTTTGGATGTGAAG GGAACAAAGAAGTCACACTAAGTTGTTTAAACAGAAAAATGTAAATATGG AATGAGCCCTCTGTAATTGAGTTTGTTTTGTTATCTTTGTGAAAATACAT AAACCTATGCACACGTAATGTTTTGATCGTGCCATTTTATCGTCAAACAT CACTTAGATTTCCCTCCTCTTTTCCCTCATTACAGGCAAACGTGATCCTC CTTCCTCTCTTTTCCACGCGCACTATCTCGCTGATCTATTTATTTTTCGT CAAATTCCTGTAGCGTCTTGAGCGCCACTGTGAGCATGTCGTAGAACGAA GATACGGCCACCCGCAAGACTTTGGGGTCACACGACACTAGCAGCACGTC TAGCGCCGTTCCGTCCACGGCAAAAGTCTTCCGAATCTTGGTCGGCTGCA ATTCATCGTCTATCTCCAACACGTTTTTGACCAGTTGGGCCTTCGCAGGC GTAGGGAAGTGGAGGTCTATATGGCTATGGTGGGGAGGGGAGGGAGGGAG GGAGGGGTTGAAGGAGTATGGAGTGTAGGACGCTTTCGTCGGGTACTTAC CAGTGGTGGCGCGTCGCCTCGGGGTCCTCCAACGACGCCATCGACTGATA GCTCTGAATTGCGAGTGGGATATCGAGATGTCGGTGCACATTGTGGTCGT GGGATGTGAACCAGAAACGCTTTCCTGCGTCTGCGTCGTTGCCAGAGAGA TCGCCGAAAGTTCCACTTCTTCACGGCTTCACCACCAGAACACACCGCAT TAACGAGCCACATCGCAATGCACACTTGGGTAGACGTTAGAAAATGCCAA GAAAAATAAGGGCGAGGCAGACCAGGCACGCCAACCTCCCCCTACCTGGG TGTTGTGGCAAAAACGTCGGGCATTCAAAATTATGAGAGCCCTTTTGTGC ACCCACCATCTGGGAACTTCATGTGTTCCACCATCCCCGAAGACATGTTG CATATTGCCTGTTGACCCTTCCTCGATATGCCTCTAAGATGGGTTTGCGT CCCACTCTATTTCTTCCAGCATGCAACACGCATCAAGAAAGTATGTTCTC AACGCCTCCACGTCCTCA back to topprotein sequence of NO02G05090.1 >NO02G05090.1-protein ID=NO02G05090.1-protein|Name=NO02G05090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp MPETVAEKAQDLVMACLFSIIAIVALVKCRRVIVLEGAETAIKTFYFLIF GAAILRAIWFFIPSDVLEPSYAPAEVWAFQTPNWEGTLISEILLSGGSLC LFAIFVLIIIYWADLLKKVFKPVRKHEPMTTFLTIMGCLAAFEIANFSLF IAGIYSSQVMTLLDSIMLAIVSMVCVVEITIFSHRFRTVLTTLGAINQVP TDSQVRTIVWITVFGNVFFVLRAAIEVFLAATFVALWKQGKPLSSLATPR NHFWDIYVLVKHTLELLILFLMLWTLQSRRAGHHHHGTSQQRLPQGGSAL RSSSAAGGGGGGGGGGGRGVASGSGGSYLSMASTVSIGSKLPNRREYTEV KDLEGGEGGGGSAQPGRLSNGTSKKAVAAAAEERGHQRSGSDGRR* back to topmRNA from alignment at chr2:1364464..1368417- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05090.1 ID=NO02G05090.1|Name=NO02G05090.1|organism=Nannochloropsis oceanica|type=mRNA|length=3954bp|location=Sequence derived from alignment at chr2:1364464..1368417- (Nannochloropsis oceanica) TGATTTTTTCCCGTTCGTTTGTGCATTTTACTGTCGTATCTCAGTCTTGT
GACGTTCTCCATCACGCGGCTCTTTGAAACTCAGGGTTCGGAGCCTCCGT
AGTCGGAGACTTCCAGACTTTAACTCTCCTTGACTAGATTATTCGGAAAG
AGCAAATATTTCGGCGATTCTCTATTGTTGTGTCCTCGTGGGCTTGGCAA
GCAGTCACGACTTTCTGGTGTCGCTGGATGTGAAAGAGTGGGCGCTTTGA
AATTTCAGTGTATAAGGAAGAGGCATGCTGACATTAATTCCTTTTCTTGA
CCTGGCCATCTTCTTCCTTTTAATGCTATGCCTCTCCTCCCTGGAATTTT
CTTAGCTTAGGCGGATACTCAATCACTTGGAGTCACGGTAGCAAGCTTCA
TATTCTGCAACAATTTGTCTTATATAGTCTTAGGAGGAAACGGAGATGAG
GGACAACGAGGGAACCTGGCTACGGTTTTGATTGTGCACGTACGGTATGA
TTCTGGTCAAAAGCAAGGTACCCGGCGATTGCAACGCCAAAATCGGTCGT
CGTCATGAGCATACCAGCATACTTACTGCTTCACGCACTCTGCACCCATG
CGCGCACAGGCAAACCTACGCGGCAGGCCAGGGGTATGTCCGGGGGGAAG
CGGTGGTACGGCCGCAAGATTTGATTTCACCACAAATAAATGCACATGCA
GTATTCGCATCTCATCGACGACAGTGCGTGCTTCCGTCATTCAATAAGCT
CTCTCTCATACTTTATACGTATACATAACCAAAACCAACCCTTTCCACAG
GCAGAAATCTTGCTGCTGGTCAAATCAAGCGCCTGTTGGAGTGTCTATTT
CGCCGCGAGCTCGTGGGCGTTCGGGAAAAGGCCTTCCAGTCCTCTCCTTC
CCAGCAGGCGTCGTTTGTTCTACGCCCTTGCCCTCCATAAACCATGCCTG
AGACAGTGGCCGAAAAGGCACAGGACCTAGTGATGGCCTGCCTCTTCTCT
ATTATTGCCATAGTTGCCCTCGTAAAATGCCGCCGGGTCATTGTCTTGGA
AGGCGCCGAGGTACGTGGGCAATTTTTTGGTGCGCGTGTGAAAGTGAGGG
AGTGTGTGTGTGAGAGAGAGAGTGTGTGCGTGTGCATCTGCGTGTGTGTG
TGCACAAGCGCATGCATTTGTGTGTGCTTATATGAATTTGTATAGGTGTA
AAGAGTTACACTGTGAAAGAATGGGGACTTTGAATGCATGTATATATCTC
TGTAGGTGGTTAACAGTCGAATTCAGCTTGACCACTGCATCTCCGGCTCT
TCCGCATTTCTTTTCCTCCTCATCCTCCCTTCCTCCCTCCTTCCAGACAG
CAATCAAAACCTTCTATTTCCTCATCTTCGGCGCTGCCATCTTGCGGGCC
ATATGGTTTTTCATCCCTTCGGACGTCCTGGAGCCCTCCTATGCTCCTGC
GGAAGTGTGGGCATTTCAAACCCCCAACTGGGAAGGCACGCTTATCTCCG
AGATACTCCTCTCGGGTGGCTCCCTCTGCCTATTCGCCATCTTCGTTCTC
ATCATTATTTATTGGGCCGATTTGTTGAAGAAAGTCTTTAAGCCTGTGCG
AAAACACGAGCCGATGACCACCTTCCTGACCATTATGGGCTGTCTCGCGG
CCTTTGAAATCGCAAATTTCTCCCTATTTATCGCCGGCATCTACTCCTCA
CAAGTGATGACTCTTCTAGACTCCATCATGCTGGCCATCGTGTCCATGGT
CTGCGTCGTGGAAATCACCATCTTCTCTCACCGCTTTCGCACCGTCCTCA
CTACCTTGGGCGCAATCAATCAAGTCCCCACCGACTCCCAAGTGCGGACC
ATAGTTTGGATAACCGTTTTCGGTAACGTTTTCTTCGTTCTACGGGCAGC
TATCGAGGTCTTCCTCGCCGCCACCTTCGTCGCACTCTGGAAGCAGGGGA
AACCGTTGAGCTCGCTCGCTACCCCCCGGAACCATTTCTGGGACATATAT
GTCCTCGTTAAGCATACCCTGGAGCTGCTCATCTTGTTTCTGATGCTGTG
GACCCTTCAATCACGCCGCGCGGGCCATCACCACCATGGTACCAGTCAGC
AGCGGCTGCCGCAGGGAGGAAGTGCTTTGAGAAGTAGTAGTGCTGCTGGT
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGTGGCGTCAGGCTC
GGGTGGGTCGTATTTATCGATGGCCTCGACAGTCTCGATTGGGAGCAAGC
TTCCGAACAGAAGAGAGTACACGGAAGTGAAAGACCTGGAAGGAGGGGAA
GGAGGAGGGGGGAGTGCACAGCCGGGGAGGTTGTCGAATGGGACTAGCAA
GAAGGCAGTGGCAGCGGCGGCGGAGGAGAGGGGTCATCAGAGGAGCGGTA
GTGATGGTAGGAGATGAGAAGGAGAGAGGGAGGGGGGTAGGTGAGGGGGA
GAGGGCGCATTTTGTATTGGTAGTTAAATGAGGGAAATACAAATCGAAAC
CGCATGGCCTCAAATTCCTTAGCAACATTCCAGTCTCACAATAGCATTTA
TGTGCCGGACCTGTACGTGTGTGTGTGTGTGTGTGTATGCGTGTTTGCTT
ACGAGAGAAGGGCATAGAGCGACAGGAAGAGAAGAAGAGAGAGTGCAGGA
GCGAGCAAGCGAGAAACACCTTGAAAACGTGTATATAGGGAAAGGTCGGA
TAATTTGAACGAGCACCAGGGAAGAGGGGGATGTGTGCTGAAGAAAGTAT
GCCTTTAAACAAAGGGAAATAGAACCTGAATTTGATAAAAAGGAAAAGAG
AGGGGGAAGTCGACCTTTGTGTCGCATTGTGGATGTGGTGGGCAAGGTAA
TTGGACAGGTGCGAGGAAGCATTTTTGGATGTGAAGGGAACAAAGAAGTC
ACACTAAGTTGTTTAAACAGAAAAATGTAAATATGGAATGAGCCCTCTGT
AATTGAGTTTGTTTTGTTATCTTTGTGAAAATACATAAACCTATGCACAC
GTAATGTTTTGATCGTGCCATTTTATCGTCAAACATCACTTAGATTTCCC
TCCTCTTTTCCCTCATTACAGGCAAACGTGATCCTCCTTCCTCTCTTTTC
CACGCGCACTATCTCGCTGATCTATTTATTTTTCGTCAAATTCCTGTAGC
GTCTTGAGCGCCACTGTGAGCATGTCGTAGAACGAAGATACGGCCACCCG
CAAGACTTTGGGGTCACACGACACTAGCAGCACGTCTAGCGCCGTTCCGT
CCACGGCAAAAGTCTTCCGAATCTTGGTCGGCTGCAATTCATCGTCTATC
TCCAACACGTTTTTGACCAGTTGGGCCTTCGCAGGCGTAGGGAAGTGGAG
GTCTATATGGCTATGGTGGGGAGGGGAGGGAGGGAGGGAGGGGTTGAAGG
AGTATGGAGTGTAGGACGCTTTCGTCGGGTACTTACCAGTGGTGGCGCGT
CGCCTCGGGGTCCTCCAACGACGCCATCGACTGATAGCTCTGAATTGCGA
GTGGGATATCGAGATGTCGGTGCACATTGTGGTCGTGGGATGTGAACCAG
AAACGCTTTCCTGCGTCTGCGTCGTTGCCAGAGAGATCGCCGAAAGTTCC
ACTTCTTCACGGCTTCACCACCAGAACACACCGCATTAACGAGCCACATC
GCAATGCACACTTGGGTAGACGTTAGAAAATGCCAAGAAAAATAAGGGCG
AGGCAGACCAGGCACGCCAACCTCCCCCTACCTGGGTGTTGTGGCAAAAA
CGTCGGGCATTCAAAATTATGAGAGCCCTTTTGTGCACCCACCATCTGGG
AACTTCATGTGTTCCACCATCCCCGAAGACATGTTGCATATTGCCTGTTG
ACCCTTCCTCGATATGCCTCTAAGATGGGTTTGCGTCCCACTCTATTTCT
TCCAGCATGCAACACGCATCAAGAAAGTATGTTCTCAACGCCTCCACGTC
CTCA back to topCoding sequence (CDS) from alignment at chr2:1364464..1368417- >NO02G05090.1 ID=NO02G05090.1|Name=NO02G05090.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr2:1364464..1368417- (Nannochloropsis oceanica) ATGCCTGAGACAGTGGCCGAAAAGGCACAGGACCTAGTGATGGCCTGCCT CTTCTCTATTATTGCCATAGTTGCCCTCGTAAAATGCCGCCGGGTCATTG TCTTGGAAGGCGCCGAGACAGCAATCAAAACCTTCTATTTCCTCATCTTC GGCGCTGCCATCTTGCGGGCCATATGGTTTTTCATCCCTTCGGACGTCCT GGAGCCCTCCTATGCTCCTGCGGAAGTGTGGGCATTTCAAACCCCCAACT GGGAAGGCACGCTTATCTCCGAGATACTCCTCTCGGGTGGCTCCCTCTGC CTATTCGCCATCTTCGTTCTCATCATTATTTATTGGGCCGATTTGTTGAA GAAAGTCTTTAAGCCTGTGCGAAAACACGAGCCGATGACCACCTTCCTGA CCATTATGGGCTGTCTCGCGGCCTTTGAAATCGCAAATTTCTCCCTATTT ATCGCCGGCATCTACTCCTCACAAGTGATGACTCTTCTAGACTCCATCAT GCTGGCCATCGTGTCCATGGTCTGCGTCGTGGAAATCACCATCTTCTCTC ACCGCTTTCGCACCGTCCTCACTACCTTGGGCGCAATCAATCAAGTCCCC ACCGACTCCCAAGTGCGGACCATAGTTTGGATAACCGTTTTCGGTAACGT TTTCTTCGTTCTACGGGCAGCTATCGAGGTCTTCCTCGCCGCCACCTTCG TCGCACTCTGGAAGCAGGGGAAACCGTTGAGCTCGCTCGCTACCCCCCGG AACCATTTCTGGGACATATATGTCCTCGTTAAGCATACCCTGGAGCTGCT CATCTTGTTTCTGATGCTGTGGACCCTTCAATCACGCCGCGCGGGCCATC ACCACCATGGTACCAGTCAGCAGCGGCTGCCGCAGGGAGGAAGTGCTTTG AGAAGTAGTAGTGCTGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AAGAGGAGTGGCGTCAGGCTCGGGTGGGTCGTATTTATCGATGGCCTCGA CAGTCTCGATTGGGAGCAAGCTTCCGAACAGAAGAGAGTACACGGAAGTG AAAGACCTGGAAGGAGGGGAAGGAGGAGGGGGGAGTGCACAGCCGGGGAG GTTGTCGAATGGGACTAGCAAGAAGGCAGTGGCAGCGGCGGCGGAGGAGA GGGGTCATCAGAGGAGCGGTAGTGATGGTAGGAGATGA back to top
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