NO02G05070.1, NO02G05070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05070.1
Unique NameNO02G05070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2061
Alignment locationchr2:1361348..1363488 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1361348..1363488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05070.1 vs.
Match: EWM30160.1 (ankyrin repeat family protein [Nannochloropsis gaditana])

HSP 1 Score: 657.5 bits (1695), Expect = 3.300e-185
Identity = 342/509 (67.19%), Postives = 412/509 (80.94%), Query Frame = 0 
Query:    2 TASTVTTASHNDDDNAQDKVNQGQAALQARVILTELIEAAASNDTAKLDVLLQQERARHPDLKDDPAIFLRQYKDANGRTALHFACHAGQVEMVRHLLDIAPEGISWTDEKGDTPLILAAAGGGGGGVAG-SRSALIQLLLDKGANPNQGPEKIESQQQGARALHHSAAHNDVEAIEALLKAGADVDAPTETGTALHWASGEGAREAVHALVKYGADVNAVNEQGLASIILAAAHGCGGCVAALAKAGADVGFILSGGGLTALHMIAEYGSLEGVKAILDTGAPGLKCALHESENGKPVHLAAWGGHQEVVEALRPHSDVKESVSELMEWGKAKAAAYEEEQKLKKEHDHHLLAQGQDSH--PVIDLPPAAASPADEQEAQKLKEVANRHFVGGELETALGLYDQAIALNGREAAFWSNRAGCLLKLERFEEALRDAEMARTLKPGWAKACFRMAEARLALGRWEDAALAAYEGVQMDSGNQALHKLLRTAIEKGRAEHAKRKGEEKGR 508
            T+S+ T+  +N+DD  QDK +QGQAAL AR  LT+L++AAAS+D AKLD LLQ+E+ RHPDL+DD A  LRQYKD NGRTALHFACHAGQVEMVRH+LD+APEG+SW D+KGDTPLILAAAGGG G  +  SR  L+++LLD+GA+PN GP K + +  GARALHH A H+DVEA+  LL+ G+DV+A   TGT LHWAS EGA+ ++ AL++ G DV+AVN+QGL+ IILAAAHGCGGCVA LAK GADVGFILSG GLTALHM+AEYGSL+GV+AIL TGAPG+ CA+ ESENGKP+HLAAW  H++VVE L P+SDVKE+V ELM WG+A+AAAYEEE+   +  DH +L   QDS     + LPP AAS AD + A +LKE ANRH+V GE   AL LYD++I LNGR++A WSNR+GCLLKL R E+ALRDAE AR LKPGW KACFRMAEARLAL R+EDAALAAYEG+Q+DSGNQALH +L+TAIE GRAEH K+  E +GR
Sbjct:    3 TSSSHTSQDNNEDD--QDKASQGQAALHARTFLTQLVDAAASDDAAKLDSLLQEEKDRHPDLEDDSAAILRQYKDGNGRTALHFACHAGQVEMVRHILDLAPEGVSWEDDKGDTPLILAAAGGGDGNTSRVSRKDLLEVLLDRGADPNHGPVK-DDEHDGARALHHVAGHDDVEAVRTLLRHGSDVNAAAGTGTPLHWASAEGAKASLEALIETGGDVDAVNDQGLSPIILAAAHGCGGCVALLAKGGADVGFILSGAGLTALHMMAEYGSLDGVQAILATGAPGVACAVQESENGKPIHLAAWAAHKDVVETLLPYSDVKETVEELMSWGRARAAAYEEEK--GRSSDHTMLQPEQDSRHSSGVHLPPPAASAADVETALRLKETANRHYVAGEYGQALPLYDESIGLNGRDSALWSNRSGCLLKLGRPEDALRDAETARALKPGWPKACFRMAEARLALKRYEDAALAAYEGIQLDSGNQALHNILKTAIELGRAEHQKKVKEREGR 506
The following BLAST results are available for this feature:
BLAST of NO02G05070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30160.13.300e-18567.19ankyrin repeat family protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05070NO02G05070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05070.1NO02G05070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05070.1.cds1NO02G05070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05070.1.cds2NO02G05070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05070.1 ID=NO02G05070.1|Name=NO02G05070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp
TGACAGATGAATGGATATGGAGGGATCGTGCGGTACAGTAAGCAAGCCGA
TATCGTCCTTGTGGTGTCTAGAGGCTTGTCGAGCGTTGTCATACGAGTAT
GGGATGTGTCAAATGCATGATTAAGGGCTTGTACACGCTCTTGTCGATCA
TGGTGATGCGAGAGATCCACGCCTCTTCCTTCAGAACACACGAATTTCAC
GACGCTTTCTAGACGGCCCAAAGCCAGAAAGATCAACCCAGGGAAACATA
ACAGTACATAACCCCTTCCAACCTTCACAGCTTCGCCCAGGTAACGACCA
CCATGACGGCCAGCACCGTCACCACTGCGAGTCACAACGACGATGACAAC
GCCCAAGACAAGGTCAACCAAGGCCAGGCGGCCCTGCAAGCCCGGGTGAT
CTTGACGGAACTCATCGAAGCCGCGGCTAGTAATGACACGGCCAAACTCG
ATGTCTTGCTTCAGCAAGAAAGGGCCCGGCATCCCGACTTAAAAGACGAC
CCTGCTATCTTTCTACGTCAATATAAAGACGCTAATGGTCGTACAGCTTT
GCATTTCGCCTGCCACGCGGGGCAGGTGGAGATGGTGCGGCATTTATTGG
ACATAGCCCCTGAGGGCATCAGTTGGACGGACGAGAAGGGGGACACGCCT
CTAATTCTTGCGGCCGCCGGGGGCGGTGGAGGCGGGGTCGCGGGTAGCCG
CAGCGCATTGATTCAGTTACTGCTAGACAAGGGTGCGAACCCCAACCAAG
GGCCGGAGAAGATAGAAAGCCAACAACAAGGGGCGCGGGCACTGCACCAC
TCGGCGGCACATAATGACGTGGAGGCCATCGAAGCGTTGCTCAAAGCAGG
AGCTGATGTTGATGCGCCCACCGAGACGGGTACTGCTCTGCATTGGGCAA
GTGGTGAAGGAGCTAGGGAAGCAGTGCACGCGTTGGTTAAATATGGCGCG
GACGTGAATGCTGTGAATGAACAGGGCTTGGCGTCTATCATTCTAGCGGC
TGCCCACGGGTGTGGTGGGTGTGTTGCAGCGCTCGCCAAAGCAGGAGCAG
ATGTGGGGTTCATACTCTCGGGAGGGGGTTTGACGGCTTTGCATATGATA
GCGGAGTACGGATCTTTGGAGGGTGTAAAGGCTATATTGGACACGGGCGC
GCCGGGGTTGAAATGCGCGTTACATGAGAGTGAGAATGGTAAGCCCGTCC
ATCTCGCCGCGTGGGGTGGACATCAAGAGGTGGTTGAAGCACTCCGACCC
CACTCAGATGTTAAAGAATCCGTAAGCGAGCTTATGGAATGGGGCAAGGC
CAAAGCCGCCGCCTACGAAGAAGAGCAAAAGCTTAAAAAAGAACACGACC
ACCATTTGTTGGCTCAAGGTCAAGACTCTCACCCTGTAATCGACCTTCCC
CCCGCTGCTGCATCACCCGCCGACGAGCAAGAAGCACAGAAGCTCAAGGA
GGTGGCAAATCGGCACTTTGTGGGGGGGGAGTTGGAGACGGCGCTGGGGC
TATATGATCAGGCCATTGCCTTAAATGGGCGAGAGGCGGCGTTTTGGAGT
AACCGGGCAGGTTGCCTGTTGAAGCTAGAGAGGTTCGAAGAGGCTCTACG
GGACGCGGAGATGGCGAGGACATTGAAGCCGGGTTGGGCGAAAGCCTGTT
TTAGGATGGCAGAGGCGAGGTTGGCGTTGGGGAGGTGGGAGGATGCTGCC
TTGGCAGCTTATGAGGGAGTTCAGATGGACTCAGGGAATCAGGCATTGCA
CAAGCTGCTAAGGACAGCGATTGAGAAGGGAAGGGCGGAACATGCGAAGA
GGAAGGGGGAGGAGAAGGGGAGAAGTAAATGAGCAGGGAAGCTGAGGAGG
TGGAAACTTTAGTTTTGGCAAAAAAGACGCTTAGAGCGCATCGGAAACTG
TCTTTTTCCATTGGGTTCTCCTTATTCTATGGTGTTTGTGTTTTAAGAAG
CTTTGCCTTACAACTGCCATTTTGGTCCTTGCATCAAATTGCTCATCTAA
TCTAAACATTTTCAACTCGTATTGGCACAATCCTTTACGCTTCCTTTCTA
TTATCACACCA
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protein sequence of NO02G05070.1

>NO02G05070.1-protein ID=NO02G05070.1-protein|Name=NO02G05070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MTASTVTTASHNDDDNAQDKVNQGQAALQARVILTELIEAAASNDTAKLD
VLLQQERARHPDLKDDPAIFLRQYKDANGRTALHFACHAGQVEMVRHLLD
IAPEGISWTDEKGDTPLILAAAGGGGGGVAGSRSALIQLLLDKGANPNQG
PEKIESQQQGARALHHSAAHNDVEAIEALLKAGADVDAPTETGTALHWAS
GEGAREAVHALVKYGADVNAVNEQGLASIILAAAHGCGGCVAALAKAGAD
VGFILSGGGLTALHMIAEYGSLEGVKAILDTGAPGLKCALHESENGKPVH
LAAWGGHQEVVEALRPHSDVKESVSELMEWGKAKAAAYEEEQKLKKEHDH
HLLAQGQDSHPVIDLPPAAASPADEQEAQKLKEVANRHFVGGELETALGL
YDQAIALNGREAAFWSNRAGCLLKLERFEEALRDAEMARTLKPGWAKACF
RMAEARLALGRWEDAALAAYEGVQMDSGNQALHKLLRTAIEKGRAEHAKR
KGEEKGRSK*
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mRNA from alignment at chr2:1361348..1363488+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05070.1 ID=NO02G05070.1|Name=NO02G05070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2141bp|location=Sequence derived from alignment at chr2:1361348..1363488+ (Nannochloropsis oceanica)
TGACAGATGAATGGATATGGAGGGATCGTGCGGTACAGTAAGCAAGCCGA
TATCGTCCTTGTGGTGTCTAGAGGCTTGTCGAGCGTTGTCATACGAGTAT
GGGATGTGTCAAATGCATGATTAAGGGCTTGTACACGCTCTTGTCGATCA
TGGTGATGCGAGAGATCCACGCCTCTTCCTTCAGAACACACGAATTTCAC
GACGCTTTCTAGACGGCCCAAAGCCAGAAAGATCAACCCAGGGAAACATA
ACAGTACATAACCCCTTCCAACCTTCACAGCTTCGCCCAGGTAACGACCA
CCATGACGGCCAGGTAAGCCATGCACAATTAACCTCCCCTACCTCTTTTC
GCAATGCTCCCTCTCACCCACTCCTACACCCCTTCATGCCCAGCACCGTC
ACCACTGCGAGTCACAACGACGATGACAACGCCCAAGACAAGGTCAACCA
AGGCCAGGCGGCCCTGCAAGCCCGGGTGATCTTGACGGAACTCATCGAAG
CCGCGGCTAGTAATGACACGGCCAAACTCGATGTCTTGCTTCAGCAAGAA
AGGGCCCGGCATCCCGACTTAAAAGACGACCCTGCTATCTTTCTACGTCA
ATATAAAGACGCTAATGGTCGTACAGCTTTGCATTTCGCCTGCCACGCGG
GGCAGGTGGAGATGGTGCGGCATTTATTGGACATAGCCCCTGAGGGCATC
AGTTGGACGGACGAGAAGGGGGACACGCCTCTAATTCTTGCGGCCGCCGG
GGGCGGTGGAGGCGGGGTCGCGGGTAGCCGCAGCGCATTGATTCAGTTAC
TGCTAGACAAGGGTGCGAACCCCAACCAAGGGCCGGAGAAGATAGAAAGC
CAACAACAAGGGGCGCGGGCACTGCACCACTCGGCGGCACATAATGACGT
GGAGGCCATCGAAGCGTTGCTCAAAGCAGGAGCTGATGTTGATGCGCCCA
CCGAGACGGGTACTGCTCTGCATTGGGCAAGTGGTGAAGGAGCTAGGGAA
GCAGTGCACGCGTTGGTTAAATATGGCGCGGACGTGAATGCTGTGAATGA
ACAGGGCTTGGCGTCTATCATTCTAGCGGCTGCCCACGGGTGTGGTGGGT
GTGTTGCAGCGCTCGCCAAAGCAGGAGCAGATGTGGGGTTCATACTCTCG
GGAGGGGGTTTGACGGCTTTGCATATGATAGCGGAGTACGGATCTTTGGA
GGGTGTAAAGGCTATATTGGACACGGGCGCGCCGGGGTTGAAATGCGCGT
TACATGAGAGTGAGAATGGTAAGCCCGTCCATCTCGCCGCGTGGGGTGGA
CATCAAGAGGTGGTTGAAGCACTCCGACCCCACTCAGATGTTAAAGAATC
CGTAAGCGAGCTTATGGAATGGGGCAAGGCCAAAGCCGCCGCCTACGAAG
AAGAGCAAAAGCTTAAAAAAGAACACGACCACCATTTGTTGGCTCAAGGT
CAAGACTCTCACCCTGTAATCGACCTTCCCCCCGCTGCTGCATCACCCGC
CGACGAGCAAGAAGCACAGAAGCTCAAGGAGGTGGCAAATCGGCACTTTG
TGGGGGGGGAGTTGGAGACGGCGCTGGGGCTATATGATCAGGCCATTGCC
TTAAATGGGCGAGAGGCGGCGTTTTGGAGTAACCGGGCAGGTTGCCTGTT
GAAGCTAGAGAGGTTCGAAGAGGCTCTACGGGACGCGGAGATGGCGAGGA
CATTGAAGCCGGGTTGGGCGAAAGCCTGTTTTAGGATGGCAGAGGCGAGG
TTGGCGTTGGGGAGGTGGGAGGATGCTGCCTTGGCAGCTTATGAGGGAGT
TCAGATGGACTCAGGGAATCAGGCATTGCACAAGCTGCTAAGGACAGCGA
TTGAGAAGGGAAGGGCGGAACATGCGAAGAGGAAGGGGGAGGAGAAGGGG
AGAAGTAAATGAGCAGGGAAGCTGAGGAGGTGGAAACTTTAGTTTTGGCA
AAAAAGACGCTTAGAGCGCATCGGAAACTGTCTTTTTCCATTGGGTTCTC
CTTATTCTATGGTGTTTGTGTTTTAAGAAGCTTTGCCTTACAACTGCCAT
TTTGGTCCTTGCATCAAATTGCTCATCTAATCTAAACATTTTCAACTCGT
ATTGGCACAATCCTTTACGCTTCCTTTCTATTATCACACCA
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Coding sequence (CDS) from alignment at chr2:1361348..1363488+

>NO02G05070.1 ID=NO02G05070.1|Name=NO02G05070.1|organism=Nannochloropsis oceanica|type=CDS|length=1530bp|location=Sequence derived from alignment at chr2:1361348..1363488+ (Nannochloropsis oceanica)
ATGACGGCCAGCACCGTCACCACTGCGAGTCACAACGACGATGACAACGC
CCAAGACAAGGTCAACCAAGGCCAGGCGGCCCTGCAAGCCCGGGTGATCT
TGACGGAACTCATCGAAGCCGCGGCTAGTAATGACACGGCCAAACTCGAT
GTCTTGCTTCAGCAAGAAAGGGCCCGGCATCCCGACTTAAAAGACGACCC
TGCTATCTTTCTACGTCAATATAAAGACGCTAATGGTCGTACAGCTTTGC
ATTTCGCCTGCCACGCGGGGCAGGTGGAGATGGTGCGGCATTTATTGGAC
ATAGCCCCTGAGGGCATCAGTTGGACGGACGAGAAGGGGGACACGCCTCT
AATTCTTGCGGCCGCCGGGGGCGGTGGAGGCGGGGTCGCGGGTAGCCGCA
GCGCATTGATTCAGTTACTGCTAGACAAGGGTGCGAACCCCAACCAAGGG
CCGGAGAAGATAGAAAGCCAACAACAAGGGGCGCGGGCACTGCACCACTC
GGCGGCACATAATGACGTGGAGGCCATCGAAGCGTTGCTCAAAGCAGGAG
CTGATGTTGATGCGCCCACCGAGACGGGTACTGCTCTGCATTGGGCAAGT
GGTGAAGGAGCTAGGGAAGCAGTGCACGCGTTGGTTAAATATGGCGCGGA
CGTGAATGCTGTGAATGAACAGGGCTTGGCGTCTATCATTCTAGCGGCTG
CCCACGGGTGTGGTGGGTGTGTTGCAGCGCTCGCCAAAGCAGGAGCAGAT
GTGGGGTTCATACTCTCGGGAGGGGGTTTGACGGCTTTGCATATGATAGC
GGAGTACGGATCTTTGGAGGGTGTAAAGGCTATATTGGACACGGGCGCGC
CGGGGTTGAAATGCGCGTTACATGAGAGTGAGAATGGTAAGCCCGTCCAT
CTCGCCGCGTGGGGTGGACATCAAGAGGTGGTTGAAGCACTCCGACCCCA
CTCAGATGTTAAAGAATCCGTAAGCGAGCTTATGGAATGGGGCAAGGCCA
AAGCCGCCGCCTACGAAGAAGAGCAAAAGCTTAAAAAAGAACACGACCAC
CATTTGTTGGCTCAAGGTCAAGACTCTCACCCTGTAATCGACCTTCCCCC
CGCTGCTGCATCACCCGCCGACGAGCAAGAAGCACAGAAGCTCAAGGAGG
TGGCAAATCGGCACTTTGTGGGGGGGGAGTTGGAGACGGCGCTGGGGCTA
TATGATCAGGCCATTGCCTTAAATGGGCGAGAGGCGGCGTTTTGGAGTAA
CCGGGCAGGTTGCCTGTTGAAGCTAGAGAGGTTCGAAGAGGCTCTACGGG
ACGCGGAGATGGCGAGGACATTGAAGCCGGGTTGGGCGAAAGCCTGTTTT
AGGATGGCAGAGGCGAGGTTGGCGTTGGGGAGGTGGGAGGATGCTGCCTT
GGCAGCTTATGAGGGAGTTCAGATGGACTCAGGGAATCAGGCATTGCACA
AGCTGCTAAGGACAGCGATTGAGAAGGGAAGGGCGGAACATGCGAAGAGG
AAGGGGGAGGAGAAGGGGAGAAGTAAATGA
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Synonyms
Publications