NO02G04600.1, NO02G04600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04600.1
Unique NameNO02G04600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1568
Alignment locationchr2:1243096..1244663 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1243096..1244663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04600.1 vs.
Match: EWM30250.1 (Cytochrome c/c1 heme-lyase [Nannochloropsis gaditana])

HSP 1 Score: 514.6 bits (1324), Expect = 3.100e-142
Identity = 283/457 (61.93%), Postives = 330/457 (72.21%), Query Frame = 0 
Query:    1 MGNAQGGGKGGGGGSDIPIP-AGAGGAASSSGGCPIKGKSASS-AITPAASAAAAPGCPVKGKSESKAMTGTVYNVYSQPIDPTNQMPANANNKPAPGQMAPLSTDRVSSRIPKGGTEAETWTYPSPQMFWNALVRKGKAEGATEEDMAVVVAIHNNMNENTWRKVCEWEALHAPPSAGTSVADDNEASDPRLSRFLGKPDDISPKARFKSLFGHPLPFDRHDWVIQRPDGTEVRYIIDYYHDDVAAKENRIPQGLHDEKAVKSISVDVRPALDSVHAIIDRGVRMPISRAAGNSPFQPLPFFWAGSKDTKGGHSDGTKNQIAEAAAAPATAFAAVASGAATTKVAAAAAALPVAPAGCGKQEEILDLTALSKQVRLSCAEHFAALQRCKDEADCARTAVALSYCMGSLLCKPETAAFDQAMAAPGSGDKHDAVIEAAFGRMRTCLDGFESKAGKER 456
            MGN  GG KG  G ++ P P  G  GA+S+  GCP+K ++ S  + +P    + + GCPVK K+ S+ +T  VYNVY+QPIDPTNQMPANANNKPAPGQ+ PLSTDRV SRIPKGGTEAETWTYPSPQMFWNALVRKGKAEGA EEDM VVVAIHNNMNENTWRKV EWEAL++        A  +EA+ PRLSRFLG+PD++SPKA FKSLFGHPLPFDRHDWVIQR DGTEVRY+IDYYHDD AAKEN++P+ L D  +VKSISVDVRPALDSVHA +DRG+RMPI+  AG++ FQPLPFFW G KD   G                      V  G A  K  A      V   G  K    ++L+A+S+QV  SCAE+FAA+Q C DEA CAR AV LSYCMG LLCK E AAFD+A+ A G  D+HD  +EAAF RM+ CLD FE++A K R
Sbjct:    1 MGNTHGG-KGASGSTEAPFPDRGDLGASSAGTGCPVKSRNKSPISESPLPPPSDSSGCPVKSKAGSEGLT--VYNVYAQPIDPTNQMPANANNKPAPGQITPLSTDRVVSRIPKGGTEAETWTYPSPQMFWNALVRKGKAEGANEEDMDVVVAIHNNMNENTWRKVLEWEALNSSSPLQMDPAHSDEANTPRLSRFLGRPDELSPKAWFKSLFGHPLPFDRHDWVIQRQDGTEVRYVIDYYHDDAAAKENQVPKDLVDANSVKSISVDVRPALDSVHAFVDRGMRMPINLVAGSTHFQPLPFFWTGGKDPAVG------------------GLGRVGPGVAPFKHMANVGG--VEKEGSNK---AMELSAISRQVHDSCAENFAAMQACTDEASCARAAVKLSYCMGGLLCKKEAAAFDEAVGALGQMDEHDEAVEAAFARMQRCLDDFEAEAQKSR 431
The following BLAST results are available for this feature:
BLAST of NO02G04600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30250.13.100e-14261.93Cytochrome c/c1 heme-lyase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04600NO02G04600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04600.1NO02G04600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04600.1.cds1NO02G04600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04600.1 ID=NO02G04600.1|Name=NO02G04600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp
CGCAAAAAACCTCCCCACCCACCGAACATAACTCGTTGAACGCCACGCAC
GCACTTCATTCCACGCCATCCCCTTGGCCAGCACATGCCAGATACCTCAC
AGCGCACATACATAACGCCACGTAGACAAGCATGGGCAATGCACAAGGTG
GTGGCAAGGGAGGAGGCGGCGGGAGCGACATTCCCATTCCAGCAGGCGCA
GGGGGAGCAGCATCGTCATCAGGCGGCTGTCCGATCAAAGGCAAGTCCGC
GTCTTCCGCCATAACACCCGCTGCGTCCGCTGCTGCAGCGCCCGGATGCC
CCGTCAAAGGCAAGAGTGAGAGCAAGGCGATGACAGGAACGGTCTACAAC
GTGTATAGCCAGCCCATTGACCCCACAAACCAAATGCCTGCCAACGCCAA
CAACAAACCCGCCCCTGGCCAGATGGCGCCCCTGAGCACGGACCGGGTGT
CCTCGCGCATCCCCAAGGGTGGCACCGAGGCTGAGACATGGACATACCCC
AGCCCACAAATGTTCTGGAACGCTCTGGTTCGGAAAGGTAAGGCGGAAGG
GGCGACGGAGGAGGATATGGCGGTAGTGGTGGCTATTCACAACAACATGA
ACGAGAATACCTGGCGCAAGGTCTGTGAGTGGGAAGCGCTCCACGCCCCC
CCTTCAGCTGGAACCAGCGTTGCGGATGACAATGAGGCATCTGATCCCCG
CCTTTCTCGATTTTTGGGGAAGCCTGACGATATCTCCCCGAAGGCACGGT
TTAAGAGTTTGTTTGGTCACCCCCTGCCTTTCGATCGACACGATTGGGTC
ATTCAACGACCTGACGGAACCGAAGTTCGCTACATCATCGATTACTACCA
CGACGACGTCGCAGCGAAGGAAAACCGAATCCCTCAGGGGCTGCATGATG
AGAAGGCTGTGAAATCTATTTCTGTCGATGTGCGACCGGCCCTGGATTCG
GTACATGCAATTATAGACCGAGGGGTGCGCATGCCCATCAGTCGCGCTGC
GGGCAACTCGCCCTTTCAGCCATTGCCATTTTTTTGGGCCGGCAGCAAGG
ACACGAAAGGTGGGCATAGTGATGGAACCAAAAATCAGATTGCCGAGGCG
GCAGCTGCGCCTGCTACGGCCTTTGCTGCAGTTGCTTCTGGGGCAGCGAC
GACGAAAGTTGCCGCTGCCGCTGCTGCGCTTCCTGTCGCTCCAGCTGGTT
GTGGAAAGCAGGAAGAAATTTTAGACTTGACGGCATTATCGAAACAAGTA
CGTCTATCGTGCGCGGAGCATTTTGCAGCGTTGCAAAGATGTAAGGACGA
GGCAGACTGCGCGAGGACCGCTGTGGCCTTGTCGTACTGTATGGGTAGTT
TGTTATGTAAACCAGAAACGGCAGCCTTTGACCAAGCGATGGCGGCACCA
GGGAGTGGAGACAAGCATGATGCGGTGATTGAGGCGGCGTTTGGGAGGAT
GAGGACATGTTTAGATGGGTTTGAGAGTAAGGCAGGGAAAGAGAGGGCGG
AAGGGGGACAAAGATAAGAGAGTATCAAGTGTGTGAAAAATCACCAAGAA
ATGTCCATAAACCCCCCT
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protein sequence of NO02G04600.1

>NO02G04600.1-protein ID=NO02G04600.1-protein|Name=NO02G04600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MGNAQGGGKGGGGGSDIPIPAGAGGAASSSGGCPIKGKSASSAITPAASA
AAAPGCPVKGKSESKAMTGTVYNVYSQPIDPTNQMPANANNKPAPGQMAP
LSTDRVSSRIPKGGTEAETWTYPSPQMFWNALVRKGKAEGATEEDMAVVV
AIHNNMNENTWRKVCEWEALHAPPSAGTSVADDNEASDPRLSRFLGKPDD
ISPKARFKSLFGHPLPFDRHDWVIQRPDGTEVRYIIDYYHDDVAAKENRI
PQGLHDEKAVKSISVDVRPALDSVHAIIDRGVRMPISRAAGNSPFQPLPF
FWAGSKDTKGGHSDGTKNQIAEAAAAPATAFAAVASGAATTKVAAAAAAL
PVAPAGCGKQEEILDLTALSKQVRLSCAEHFAALQRCKDEADCARTAVAL
SYCMGSLLCKPETAAFDQAMAAPGSGDKHDAVIEAAFGRMRTCLDGFESK
AGKERAEGGQR*
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mRNA from alignment at chr2:1243096..1244663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04600.1 ID=NO02G04600.1|Name=NO02G04600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp|location=Sequence derived from alignment at chr2:1243096..1244663- (Nannochloropsis oceanica)
CGCAAAAAACCTCCCCACCCACCGAACATAACTCGTTGAACGCCACGCAC
GCACTTCATTCCACGCCATCCCCTTGGCCAGCACATGCCAGATACCTCAC
AGCGCACATACATAACGCCACGTAGACAAGCATGGGCAATGCACAAGGTG
GTGGCAAGGGAGGAGGCGGCGGGAGCGACATTCCCATTCCAGCAGGCGCA
GGGGGAGCAGCATCGTCATCAGGCGGCTGTCCGATCAAAGGCAAGTCCGC
GTCTTCCGCCATAACACCCGCTGCGTCCGCTGCTGCAGCGCCCGGATGCC
CCGTCAAAGGCAAGAGTGAGAGCAAGGCGATGACAGGAACGGTCTACAAC
GTGTATAGCCAGCCCATTGACCCCACAAACCAAATGCCTGCCAACGCCAA
CAACAAACCCGCCCCTGGCCAGATGGCGCCCCTGAGCACGGACCGGGTGT
CCTCGCGCATCCCCAAGGGTGGCACCGAGGCTGAGACATGGACATACCCC
AGCCCACAAATGTTCTGGAACGCTCTGGTTCGGAAAGGTAAGGCGGAAGG
GGCGACGGAGGAGGATATGGCGGTAGTGGTGGCTATTCACAACAACATGA
ACGAGAATACCTGGCGCAAGGTCTGTGAGTGGGAAGCGCTCCACGCCCCC
CCTTCAGCTGGAACCAGCGTTGCGGATGACAATGAGGCATCTGATCCCCG
CCTTTCTCGATTTTTGGGGAAGCCTGACGATATCTCCCCGAAGGCACGGT
TTAAGAGTTTGTTTGGTCACCCCCTGCCTTTCGATCGACACGATTGGGTC
ATTCAACGACCTGACGGAACCGAAGTTCGCTACATCATCGATTACTACCA
CGACGACGTCGCAGCGAAGGAAAACCGAATCCCTCAGGGGCTGCATGATG
AGAAGGCTGTGAAATCTATTTCTGTCGATGTGCGACCGGCCCTGGATTCG
GTACATGCAATTATAGACCGAGGGGTGCGCATGCCCATCAGTCGCGCTGC
GGGCAACTCGCCCTTTCAGCCATTGCCATTTTTTTGGGCCGGCAGCAAGG
ACACGAAAGGTGGGCATAGTGATGGAACCAAAAATCAGATTGCCGAGGCG
GCAGCTGCGCCTGCTACGGCCTTTGCTGCAGTTGCTTCTGGGGCAGCGAC
GACGAAAGTTGCCGCTGCCGCTGCTGCGCTTCCTGTCGCTCCAGCTGGTT
GTGGAAAGCAGGAAGAAATTTTAGACTTGACGGCATTATCGAAACAAGTA
CGTCTATCGTGCGCGGAGCATTTTGCAGCGTTGCAAAGATGTAAGGACGA
GGCAGACTGCGCGAGGACCGCTGTGGCCTTGTCGTACTGTATGGGTAGTT
TGTTATGTAAACCAGAAACGGCAGCCTTTGACCAAGCGATGGCGGCACCA
GGGAGTGGAGACAAGCATGATGCGGTGATTGAGGCGGCGTTTGGGAGGAT
GAGGACATGTTTAGATGGGTTTGAGAGTAAGGCAGGGAAAGAGAGGGCGG
AAGGGGGACAAAGATAAGAGAGTATCAAGTGTGTGAAAAATCACCAAGAA
ATGTCCATAAACCCCCCT
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Coding sequence (CDS) from alignment at chr2:1243096..1244663-

>NO02G04600.1 ID=NO02G04600.1|Name=NO02G04600.1|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr2:1243096..1244663- (Nannochloropsis oceanica)
ATGGGCAATGCACAAGGTGGTGGCAAGGGAGGAGGCGGCGGGAGCGACAT
TCCCATTCCAGCAGGCGCAGGGGGAGCAGCATCGTCATCAGGCGGCTGTC
CGATCAAAGGCAAGTCCGCGTCTTCCGCCATAACACCCGCTGCGTCCGCT
GCTGCAGCGCCCGGATGCCCCGTCAAAGGCAAGAGTGAGAGCAAGGCGAT
GACAGGAACGGTCTACAACGTGTATAGCCAGCCCATTGACCCCACAAACC
AAATGCCTGCCAACGCCAACAACAAACCCGCCCCTGGCCAGATGGCGCCC
CTGAGCACGGACCGGGTGTCCTCGCGCATCCCCAAGGGTGGCACCGAGGC
TGAGACATGGACATACCCCAGCCCACAAATGTTCTGGAACGCTCTGGTTC
GGAAAGGTAAGGCGGAAGGGGCGACGGAGGAGGATATGGCGGTAGTGGTG
GCTATTCACAACAACATGAACGAGAATACCTGGCGCAAGGTCTGTGAGTG
GGAAGCGCTCCACGCCCCCCCTTCAGCTGGAACCAGCGTTGCGGATGACA
ATGAGGCATCTGATCCCCGCCTTTCTCGATTTTTGGGGAAGCCTGACGAT
ATCTCCCCGAAGGCACGGTTTAAGAGTTTGTTTGGTCACCCCCTGCCTTT
CGATCGACACGATTGGGTCATTCAACGACCTGACGGAACCGAAGTTCGCT
ACATCATCGATTACTACCACGACGACGTCGCAGCGAAGGAAAACCGAATC
CCTCAGGGGCTGCATGATGAGAAGGCTGTGAAATCTATTTCTGTCGATGT
GCGACCGGCCCTGGATTCGGTACATGCAATTATAGACCGAGGGGTGCGCA
TGCCCATCAGTCGCGCTGCGGGCAACTCGCCCTTTCAGCCATTGCCATTT
TTTTGGGCCGGCAGCAAGGACACGAAAGGTGGGCATAGTGATGGAACCAA
AAATCAGATTGCCGAGGCGGCAGCTGCGCCTGCTACGGCCTTTGCTGCAG
TTGCTTCTGGGGCAGCGACGACGAAAGTTGCCGCTGCCGCTGCTGCGCTT
CCTGTCGCTCCAGCTGGTTGTGGAAAGCAGGAAGAAATTTTAGACTTGAC
GGCATTATCGAAACAAGTACGTCTATCGTGCGCGGAGCATTTTGCAGCGT
TGCAAAGATGTAAGGACGAGGCAGACTGCGCGAGGACCGCTGTGGCCTTG
TCGTACTGTATGGGTAGTTTGTTATGTAAACCAGAAACGGCAGCCTTTGA
CCAAGCGATGGCGGCACCAGGGAGTGGAGACAAGCATGATGCGGTGATTG
AGGCGGCGTTTGGGAGGATGAGGACATGTTTAGATGGGTTTGAGAGTAAG
GCAGGGAAAGAGAGGGCGGAAGGGGGACAAAGATAA
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Synonyms
Publications